Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0014030

Physical Location & Seq

Genomic Coordinates Forward (+)

17789279 .. 17790653

Gene Structure 1375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG085200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGACGGTCGTGCTGGGCCTCGATGGGCCTACCATAGACTCTTACCCGAAGATAGTTCTCGGGGAAAGCAGGCGGCTGCCTAAGCCGAACGACGGCGTTTGCTCCATCTGCTTGTCGGAGTACCAGGCCAAGGATCCCGTACGGTGCATCCCGGATTGCCATCACTGTTTCCACGTTGATTGCGTAGACGAATGGCTTCGTATGAGTGCCACGTGTCCCTCGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

75

Amino Acids

8.41

Weight (kDa)

5.39

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	34 - 73	7.7e-12	Ring finger domain
zf-RING_11	PF17123	34 - 62	8.3e-08	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07040
fragaria_vesca	FvH4_7g04010
malus_domestica	MD00G1152800.v1.1 MD03G1294900.v1.1
prunus_persica	Prupe.2G044600_v2.0.a1
pyrus_communis	pycom02g23630
rosa_chinensis	RchiOBHm_Chr1g0327791
rosa_laevigata	RLG00000029964
rosa_multiflora	Rmu_sc0005527.1_g000012
rosa_rugosa	Rorug01G0071000
rosa_samantha	Rh1AG087100 Rh1BG070300 Rh1CG085200 Rh1DG091600 Rh6BG243000 Rh6CG245000
rosa_wichuraiana	Rw1G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	1 cut(s)	73
AclWI	GGATC	2 cut(s)	128, 141
AcvI	CACGTG	1 cut(s)	213
AfaI	GTAC	2 cut(s)	122, 141
AfiI	CCNNNNNNNGG	2 cut(s)	92, 130
AflIII	ACRYGT	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	123
AlwI	GGATC	2 cut(s)	128, 141
Ama87I	CYCGRG	1 cut(s)	59
AoxI	GGCC	3 cut(s)	16, 26, 126
ApeKI	GCWGC	1 cut(s)	76
Asp700I	GAANNNNTTC	1 cut(s)	195
AspS9I	GGNCC	2 cut(s)	16, 26
AsuC2I	CCSGG	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	59
BamHI	GGATCC	1 cut(s)	133
BauI	CACGAG	1 cut(s)	220
BbrPI	CACGTG	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	63
BccI	CCATC	3 cut(s)	17, 113, 168
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	125
BcnI	CCSGG	1 cut(s)	152
BisI	GCNGC	2 cut(s)	74, 77
BlsI	GCNGC	2 cut(s)	75, 78
Bme1390I	CCNGG	2 cut(s)	125, 152
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	2 cut(s)	16, 26
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	2 cut(s)	125, 152
BmsI	GCATC	1 cut(s)	156
Bpu10I	CCTNAGC	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	152
BsaAI	YACGTR	1 cut(s)	213
BsaBI	GATNNNNATC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 130
Bse8I	GATNNNNATC	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	147
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	2 cut(s)	92, 130
BseXI	GCAGC	1 cut(s)	63
BseYI	CCCAGC	1 cut(s)	13
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	3 cut(s)	18, 28, 128
BsiEI	CGRYCG	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	152
BsiWI	CGTACG	1 cut(s)	139
BslFI	GGGAC	1 cut(s)	201
BslI	CCNNNNNNNGG	2 cut(s)	92, 130
BsmFI	GGGAC	1 cut(s)	201
BsnI	GGCC	3 cut(s)	18, 28, 128
BsoBI	CYCGRG	1 cut(s)	59
Bsp143I	GATC	1 cut(s)	133
BspACI	CCGC	1 cut(s)	73
BspANI	GGCC	3 cut(s)	18, 28, 128
BspLI	GGNNCC	1 cut(s)	135
BspPI	GGATC	2 cut(s)	128, 141
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	1 cut(s)	133
BssSI	CACGAG	1 cut(s)	220
BssT1I	CCWWGG	1 cut(s)	129
Bst2BI	CACGAG	1 cut(s)	220
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	3 cut(s)	7, 144, 167
BstBAI	YACGTR	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	71
BstDEI	CTNAG	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	147
BstKTI	GATC	1 cut(s)	136
BstMBI	GATC	1 cut(s)	133
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 108
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	2 cut(s)	123, 150
BstV1I	GCAGC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	3 cut(s)	18, 28, 128
BtsCI	GGATG	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	163
Cac8I	GCNNGC	1 cut(s)	71
Cfr13I	GGNCC	2 cut(s)	16, 26
Csp6I	GTAC	2 cut(s)	121, 140
CspCI	CAANNNNNGTGG	2 cut(s)	161, 196
CviJI	RGCY	6 cut(s)	18, 28, 76, 85, 128, 196
CviKI_1	RGCY	6 cut(s)	18, 28, 76, 85, 128, 196
CviQI	GTAC	2 cut(s)	121, 140
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	129
Eco72I	CACGTG	1 cut(s)	213
Eco88I	CYCGRG	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
FaiI	YATR	2 cut(s)	35, 203
FaqI	GGGAC	1 cut(s)	201
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	2 cut(s)	74, 77
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	2 cut(s)	74, 77
GluI	GCNGC	2 cut(s)	74, 77
GsaI	CCCAGC	1 cut(s)	17
HaeIII	GGCC	3 cut(s)	18, 28, 128
HapII	CCGG	1 cut(s)	152
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	1 cut(s)	118
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	1 cut(s)	95
HpyCH4III	ACNGT	3 cut(s)	7, 144, 167
HpyCH4IV	ACGT	2 cut(s)	174, 212
HpyCH4V	TGCA	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 108
HpyF3I	CTNAG	1 cut(s)	81
HpySE526I	ACGT	2 cut(s)	174, 212
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	4 cut(s)	55, 110, 137, 165
Lsp1109I	GCAGC	1 cut(s)	63
LweI	GCATC	1 cut(s)	156
MaeII	ACGT	2 cut(s)	174, 212
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	1 cut(s)	61
MflI	RGATCY	1 cut(s)	133
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	1 cut(s)	29
MroXI	GAANNNNTTC	1 cut(s)	195
MspI	CCGG	1 cut(s)	152
MspR9I	CCNGG	2 cut(s)	125, 152
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	2 cut(s)	82, 108
NciI	CCSGG	1 cut(s)	152
NdeII	GATC	1 cut(s)	133
NlaIV	GGNNCC	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	2 cut(s)	180, 218
PdmI	GAANNNNTTC	1 cut(s)	195
Pfl23II	CGTACG	1 cut(s)	139
PfoI	TCCNGGA	1 cut(s)	150
PkrI	GCNGC	2 cut(s)	75, 78
PleI	GAGTC	1 cut(s)	32
PmaCI	CACGTG	1 cut(s)	213
PmlI	CACGTG	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	32
Ppu21I	YACGTR	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	123
PspCI	CACGTG	1 cut(s)	213
PspFI	CCCAGC	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	123
PspLI	CGTACG	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	2 cut(s)	16, 26
PsuI	RGATCY	1 cut(s)	133
RsaI	GTAC	2 cut(s)	122, 141
RsaNI	GTAC	2 cut(s)	121, 140
SatI	GCNGC	2 cut(s)	74, 77
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	2 cut(s)	16, 26
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	2 cut(s)	125, 152
SetI	ASST	2 cut(s)	177, 215
SfaNI	GCATC	1 cut(s)	156
SsiI	CCGC	1 cut(s)	73
StyD4I	CCNGG	2 cut(s)	123, 150
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	3 cut(s)	7, 144, 167
TaiI	ACGT	2 cut(s)	177, 215
TaqI	TCGA	1 cut(s)	21
TauI	GCSGC	1 cut(s)	76
TscAI	CASTG	1 cut(s)	170
TseI	GCWGC	1 cut(s)	76
TspRI	CASTG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	186
XmnI	GAANNNNTTC	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.