Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0014030

Physical Location & Seq

Genomic Coordinates Forward (+)

5004121 .. 5005196

Gene Structure 1076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G044600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTTCACGGCAGACCCACCGGCATCAGCCACCGGTGTCGGCGTCGGCTACGGCATAGCCATTGCCGTCAGCATCCTCTTCCTCATCTCAGCCATCATGCTCGCTTCCTACGCCTGCGTCAAAGTCAAAGGAGCCTCCGCCACCACCAGACCCCACGAAGACCGCAGCGTCGCTTATAATAACGTCTACGGACACCGCAGCCGCAGCGAGGCCGTAAACTCAAATGACCCCGTCGTTGTCGTAATGGGCCTCGACGGGCCCACCATAGACTCTTACCCGAAGCTGGTGCTCGGCGAAAGCCGGCGCCTCCCCCAGCGCAACTACACCGTTTGCTCCATCTGCTTGTCCGAGTACAAGCCCAGGGATCAAGTGAGGTGCATCCCGGATTGCCACCATTGCTTTCACGCTGAGTGTGTTGACGAGTGGCTTCGTATGAGCGCCACGTGTCCCATCTGTAGAAATTCTCCGGCTCCCTCGGTGGGTCCTAGTCCTCTGTCCGATTTGGTGCCGCTGGCATTCCATTCCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

177

Amino Acids

19.04

Weight (kDa)

7.57

Isoelectric Point (pI)

51.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07040
fragaria_vesca	FvH4_7g04010
malus_domestica	MD00G1152800.v1.1 MD03G1294900.v1.1
prunus_persica	Prupe.2G044600_v2.0.a1
pyrus_communis	pycom02g23630
rosa_chinensis	RchiOBHm_Chr1g0327791
rosa_laevigata	RLG00000029964
rosa_multiflora	Rmu_sc0005527.1_g000012
rosa_rugosa	Rorug01G0071000
rosa_samantha	Rh1AG087100 Rh1BG070300 Rh1CG085200 Rh1DG091600 Rh6BG243000 Rh6CG245000
rosa_wichuraiana	Rw1G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	177
AasI	GACNNNNNNGTC	1 cut(s)	167
AccB1I	GGYRCC	2 cut(s)	303, 505
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	5 cut(s)	138, 163, 196, 202, 509
AclWI	GGATC	1 cut(s)	372
AcsI	RAATTY	1 cut(s)	460
AcvI	CACGTG	1 cut(s)	444
AcyI	GRCGYC	2 cut(s)	42, 304
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	3 cut(s)	208, 283, 479
AflIII	ACRYGT	1 cut(s)	443
AgeI	ACCGGT	1 cut(s)	32
AjnI	CCWGG	2 cut(s)	359, 524
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
Alw21I	GWGCWC	1 cut(s)	291
AlwI	GGATC	1 cut(s)	372
AoxI	GGCC	3 cut(s)	210, 247, 257
ApaI	GGGCCC	1 cut(s)	261
ApeKI	GCWGC	3 cut(s)	165, 198, 204
ApoI	RAATTY	1 cut(s)	460
AsiGI	ACCGGT	1 cut(s)	32
AspLEI	GCGC	3 cut(s)	306, 318, 440
AspS9I	GGNCC	4 cut(s)	247, 257, 258, 482
AsuC2I	CCSGG	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	482
BaeGI	GKGCMC	1 cut(s)	261
BanI	GGYRCC	2 cut(s)	303, 505
BanII	GRGCYC	1 cut(s)	261
BbrPI	CACGTG	1 cut(s)	444
BbsI	GAAGAC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	3 cut(s)	177, 210, 216
BccI	CCATC	3 cut(s)	101, 344, 458
BceAI	ACGGC	4 cut(s)	24, 50, 67, 197
BcgI	CGANNNNNNTGC	2 cut(s)	268, 302
BciT130I	CCWGG	2 cut(s)	361, 526
BcnI	CCSGG	1 cut(s)	383
BfaI	CTAG	1 cut(s)	486
BfmI	CTRYAG	1 cut(s)	454
BfoI	RGCGCY	2 cut(s)	307, 441
BisI	GCNGC	5 cut(s)	166, 199, 202, 205, 509
BlsI	GCNGC	5 cut(s)	167, 200, 203, 206, 510
Bme1390I	CCNGG	3 cut(s)	361, 383, 526
Bme18I	GGWCC	1 cut(s)	482
BmgT120I	GGNCC	4 cut(s)	247, 257, 258, 482
BmiI	GGNNCC	6 cut(s)	133, 259, 305, 471, 483, 507
BmrFI	CCNGG	3 cut(s)	361, 383, 526
BmsI	GCATC	3 cut(s)	32, 81, 387
BpiI	GAAGAC	1 cut(s)	165
BpuMI	CCSGG	1 cut(s)	383
BsaAI	YACGTR	1 cut(s)	444
BsaHI	GRCGYC	2 cut(s)	42, 304
BsaJI	CCNNGG	3 cut(s)	359, 360, 474
BsaWI	WCCGGW	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 283, 479
Bse118I	RCCGGY	3 cut(s)	19, 32, 300
Bse3DI	GCAATG	2 cut(s)	60, 394
BseBI	CCWGG	2 cut(s)	361, 526
BseDI	CCNNGG	3 cut(s)	359, 360, 474
BseGI	GGATG	2 cut(s)	72, 378
BseLI	CCNNNNNNNGG	3 cut(s)	208, 283, 479
BseMI	GCAATG	2 cut(s)	60, 394
BseMII	CTCAG	2 cut(s)	102, 399
BseSI	GKGCMC	1 cut(s)	261
BseXI	GCAGC	3 cut(s)	177, 210, 216
BseYI	CCCAGC	1 cut(s)	312
BshFI	GGCC	3 cut(s)	212, 249, 259
BshNI	GGYRCC	2 cut(s)	303, 505
BshTI	ACCGGT	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	291
BsiSI	CCGG	5 cut(s)	20, 33, 301, 383, 467
BslFI	GGGAC	1 cut(s)	432
BslI	CCNNNNNNNGG	3 cut(s)	208, 283, 479
BsmFI	GGGAC	1 cut(s)	432
BsmI	GAATGC	1 cut(s)	515
BsnI	GGCC	3 cut(s)	212, 249, 259
Bsp120I	GGGCCC	1 cut(s)	257
Bsp1286I	GDGCHC	2 cut(s)	261, 291
Bsp143I	GATC	1 cut(s)	364
BspACI	CCGC	5 cut(s)	138, 163, 196, 202, 509
BspANI	GGCC	3 cut(s)	212, 249, 259
BspCNI	CTCAG	2 cut(s)	101, 400
BspLI	GGNNCC	6 cut(s)	133, 259, 305, 471, 483, 507
BspPI	GGATC	1 cut(s)	372
BspT107I	GGYRCC	2 cut(s)	303, 505
BsrDI	GCAATG	2 cut(s)	60, 394
BsrFI	RCCGGY	3 cut(s)	19, 32, 300
BssAI	RCCGGY	3 cut(s)	19, 32, 300
BssECI	CCNNGG	3 cut(s)	359, 360, 474
BssMI	GATC	1 cut(s)	364
BssNI	GRCGYC	2 cut(s)	42, 304
Bst2UI	CCWGG	2 cut(s)	361, 526
Bst4CI	ACNGT	1 cut(s)	328
Bst6I	CTCTTC	1 cut(s)	83
BstACI	GRCGYC	2 cut(s)	42, 304
BstBAI	YACGTR	1 cut(s)	444
BstC8I	GCNNGC	4 cut(s)	102, 115, 302, 513
BstDEI	CTNAG	2 cut(s)	88, 408
BstF5I	GGATG	2 cut(s)	72, 378
BstH2I	RGCGCY	2 cut(s)	307, 441
BstHHI	GCGC	3 cut(s)	306, 318, 440
BstKTI	GATC	1 cut(s)	367
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 204, 339, 396
BstNI	CCWGG	2 cut(s)	361, 526
BstSCI	CCNGG	3 cut(s)	359, 381, 524
BstSFI	CTRYAG	1 cut(s)	454
BstSLI	GKGCMC	1 cut(s)	261
BstV1I	GCAGC	3 cut(s)	177, 210, 216
BstV2I	GAAGAC	1 cut(s)	165
BsuRI	GGCC	3 cut(s)	212, 249, 259
BtsCI	GGATG	2 cut(s)	72, 378
Cac8I	GCNNGC	4 cut(s)	102, 115, 302, 513
CfoI	GCGC	3 cut(s)	306, 318, 440
Cfr10I	RCCGGY	3 cut(s)	19, 32, 300
Cfr13I	GGNCC	4 cut(s)	247, 257, 258, 482
CseI	GACGC	3 cut(s)	31, 106, 157
Csp6I	GTAC	1 cut(s)	352
CspAI	ACCGGT	1 cut(s)	32
CviAII	CATG	1 cut(s)	97
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	2 cut(s)	88, 408
DinI	GGCGCC	1 cut(s)	305
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
EciI	GGCGGA	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	482
Eco72I	CACGTG	1 cut(s)	444
EcoO109I	RGGNCCY	1 cut(s)	482
EcoRII	CCWGG	2 cut(s)	359, 524
EcoT38I	GRGCYC	1 cut(s)	261
EgeI	GGCGCC	1 cut(s)	305
EheI	GGCGCC	1 cut(s)	305
FaeI	CATG	1 cut(s)	100
FaiI	YATR	5 cut(s)	56, 98, 177, 266, 434
FaqI	GGGAC	1 cut(s)	432
FatI	CATG	1 cut(s)	96
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	5 cut(s)	166, 199, 202, 205, 509
FokI	GGATG	2 cut(s)	59, 365
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	5 cut(s)	166, 199, 202, 205, 509
FspBI	CTAG	1 cut(s)	486
GlaI	GCGC	3 cut(s)	305, 317, 439
GluI	GCNGC	5 cut(s)	166, 199, 202, 205, 509
GsaI	CCCAGC	1 cut(s)	316
HaeII	RGCGCY	2 cut(s)	307, 441
HaeIII	GGCC	3 cut(s)	212, 249, 259
HapII	CCGG	5 cut(s)	20, 33, 301, 383, 467
HgaI	GACGC	3 cut(s)	31, 106, 157
HhaI	GCGC	3 cut(s)	306, 318, 440
Hin1I	GRCGYC	2 cut(s)	42, 304
Hin1II	CATG	1 cut(s)	100
Hin6I	GCGC	3 cut(s)	304, 316, 438
HinP1I	GCGC	3 cut(s)	304, 316, 438
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HinfI	GANTC	1 cut(s)	269
HpaII	CCGG	5 cut(s)	20, 33, 301, 383, 467
Hpy166II	GTNNAC	4 cut(s)	6, 187, 217, 418
Hpy188I	TCNGA	2 cut(s)	349, 499
Hpy8I	GTNNAC	4 cut(s)	6, 187, 217, 418
Hpy99I	CGWCG	4 cut(s)	47, 173, 236, 257
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4IV	ACGT	2 cut(s)	183, 443
HpyCH4V	TGCA	1 cut(s)	378
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 204, 339, 396
HpyF3I	CTNAG	2 cut(s)	88, 408
HpySE526I	ACGT	2 cut(s)	183, 443
Hsp92I	GRCGYC	2 cut(s)	42, 304
Hsp92II	CATG	1 cut(s)	100
HspAI	GCGC	3 cut(s)	304, 316, 438
KasI	GGCGCC	1 cut(s)	303
KroI	GCCGGC	1 cut(s)	300
KroNI	GCCGGC	1 cut(s)	302
Kzo9I	GATC	1 cut(s)	364
LmnI	GCTCC	3 cut(s)	131, 338, 475
Lsp1109I	GCAGC	3 cut(s)	177, 210, 216
LweI	GCATC	3 cut(s)	32, 81, 387
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	2 cut(s)	183, 443
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	2 cut(s)	70, 170
MhlI	GDGCHC	2 cut(s)	261, 291
MluCI	AATT	1 cut(s)	460
Mly113I	GGCGCC	1 cut(s)	304
MlyI	GAGTC	1 cut(s)	263
MnlI	CCTC	9 cut(s)	86, 92, 145, 202, 260, 317, 366, 484, 501
MroNI	GCCGGC	1 cut(s)	300
MspA1I	CMGCKG	1 cut(s)	511
MspI	CCGG	5 cut(s)	20, 33, 301, 383, 467
MspR9I	CCNGG	3 cut(s)	361, 383, 526
Mva1269I	GAATGC	1 cut(s)	515
MvaI	CCWGG	2 cut(s)	361, 526
MwoI	GCNNNNNNNGC	4 cut(s)	110, 204, 339, 396
NaeI	GCCGGC	1 cut(s)	302
NarI	GGCGCC	1 cut(s)	304
NciI	CCSGG	1 cut(s)	383
NdeII	GATC	1 cut(s)	364
NgoMIV	GCCGGC	1 cut(s)	300
NlaIII	CATG	1 cut(s)	100
NlaIV	GGNNCC	6 cut(s)	133, 259, 305, 471, 483, 507
NmeAIII	GCCGAG	1 cut(s)	270
PasI	CCCWGGG	1 cut(s)	360
PctI	GAATGC	1 cut(s)	515
PdiI	GCCGGC	1 cut(s)	302
PflFI	GACNNNGTC	1 cut(s)	230
PfoI	TCCNGGA	1 cut(s)	381
PinAI	ACCGGT	1 cut(s)	32
PkrI	GCNGC	5 cut(s)	167, 200, 203, 206, 510
PleI	GAGTC	1 cut(s)	263
PluTI	GGCGCC	1 cut(s)	307
PmaCI	CACGTG	1 cut(s)	444
PmlI	CACGTG	1 cut(s)	444
PpsI	GAGTC	1 cut(s)	263
Ppu21I	YACGTR	1 cut(s)	444
PpuMI	RGGWCCY	1 cut(s)	482
PsiI	TTATAA	1 cut(s)	177
Psp5II	RGGWCCY	1 cut(s)	482
Psp6I	CCWGG	2 cut(s)	359, 524
PspCI	CACGTG	1 cut(s)	444
PspFI	CCCAGC	1 cut(s)	312
PspGI	CCWGG	2 cut(s)	359, 524
PspN4I	GGNNCC	6 cut(s)	133, 259, 305, 471, 483, 507
PspOMI	GGGCCC	1 cut(s)	257
PspPI	GGNCC	4 cut(s)	247, 257, 258, 482
PspPPI	RGGWCCY	1 cut(s)	482
PsyI	GACNNNGTC	1 cut(s)	230
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SatI	GCNGC	5 cut(s)	166, 199, 202, 205, 509
Sau3AI	GATC	1 cut(s)	364
Sau96I	GGNCC	4 cut(s)	247, 257, 258, 482
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	3 cut(s)	361, 383, 526
SduI	GDGCHC	2 cut(s)	261, 291
SetI	ASST	5 cut(s)	186, 285, 377, 446, 530
SfaNI	GCATC	3 cut(s)	32, 81, 387
SfcI	CTRYAG	1 cut(s)	454
SfoI	GGCGCC	1 cut(s)	305
SgrAI	CRCCGGYG	1 cut(s)	32
SinI	GGWCC	1 cut(s)	482
Sse9I	AATT	1 cut(s)	460
SsiI	CCGC	5 cut(s)	138, 163, 196, 202, 509
SspDI	GGCGCC	1 cut(s)	303
SspMI	CTAG	1 cut(s)	486
StyD4I	CCNGG	3 cut(s)	359, 381, 524
TaaI	ACNGT	1 cut(s)	328
TaiI	ACGT	2 cut(s)	186, 446
TaqI	TCGA	1 cut(s)	252
TasI	AATT	1 cut(s)	460
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	2 cut(s)	204, 511
TseI	GCWGC	3 cut(s)	165, 198, 204
TspGWI	ACGGA	1 cut(s)	204
Tth111I	GACNNNGTC	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	482
XapI	RAATTY	1 cut(s)	460
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.