Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0014030

Physical Location & Seq

Genomic Coordinates Forward (+)

52304555 .. 52305067

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029964

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTTCACGGCTGACCCTCCCATCTCTGCCACCGGCGTCGGCGTCGGCTACGGCATCGCCATCGCCGTCAGCATCCTCGTACTCATCTCCGCCATCATGCTCGCCTCTTACGCCTGCGTCAAAGTCAAAGCCCACGGCGGTTTTTACAACGACGAGTCCAACTCCCACCGCCGCTCCCCCACCACCACAGGCATCTATTCAGCCGAGCCAATGACGGTCGTGCTGGGCCTCGATGGGCCTACCATAGACTCTTACCCGAAGATAGTTCTCGGGGAAAGCCGGCGGCTGCCTAAGCCGAACGACGGGGTTTGCTCCATCTGCTTGTCGGAGTACCAGGCCAAGGATCCCGTACGGTGCATCCCGGATTGCCATCACTGTTTCCACGTTGATTGCGTAGACGAATGGCTGCGCATGAGTGCCACGTGTCCCGTCTGTAGAAACTCTCCGGCTCCGTCGCCGGGTCCGAGTCCTCTATCCGATTTGGTACCCCTGGCACTCCATTATTCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

171

Amino Acids

18.12

Weight (kDa)

6.02

Isoelectric Point (pI)

53.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	102 - 146	3.5e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	104 - 146	5.3e-13	Ring finger domain
zf-RING_11	PF17123	104 - 132	3.8e-07	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07040
fragaria_vesca	FvH4_7g04010
malus_domestica	MD00G1152800.v1.1 MD03G1294900.v1.1
prunus_persica	Prupe.2G044600_v2.0.a1
pyrus_communis	pycom02g23630
rosa_chinensis	RchiOBHm_Chr1g0327791
rosa_laevigata	RLG00000029964
rosa_multiflora	Rmu_sc0005527.1_g000012
rosa_rugosa	Rorug01G0071000
rosa_samantha	Rh1AG087100 Rh1BG070300 Rh1CG085200 Rh1DG091600 Rh6BG243000 Rh6CG245000
rosa_wichuraiana	Rw1G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	410
Acc65I	GGTACC	1 cut(s)	484
AccB1I	GGYRCC	1 cut(s)	484
AccBSI	CCGCTC	1 cut(s)	174
AccI	GTMKAC	1 cut(s)	396
AciI	CCGC	5 cut(s)	90, 138, 169, 172, 283
AclWI	GGATC	2 cut(s)	338, 351
AcvI	CACGTG	1 cut(s)	423
AcyI	GRCGYC	2 cut(s)	36, 42
AfaI	GTAC	4 cut(s)	81, 332, 351, 486
AfiI	CCNNNNNNNGG	3 cut(s)	302, 340, 458
AflIII	ACRYGT	1 cut(s)	422
AjnI	CCWGG	2 cut(s)	333, 489
AlwI	GGATC	2 cut(s)	338, 351
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	3 cut(s)	226, 236, 336
ApeKI	GCWGC	2 cut(s)	286, 406
Asp718I	GGTACC	1 cut(s)	484
AspLEI	GCGC	1 cut(s)	411
AspS9I	GGNCC	3 cut(s)	226, 236, 461
AsuC2I	CCSGG	2 cut(s)	362, 459
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	461
BamHI	GGATCC	1 cut(s)	343
BanI	GGYRCC	1 cut(s)	484
BbrPI	CACGTG	1 cut(s)	423
BbvI	GCAGC	2 cut(s)	273, 393
BccI	CCATC	6 cut(s)	29, 68, 101, 227, 323, 378
BceAI	ACGGC	4 cut(s)	24, 50, 67, 151
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	2 cut(s)	335, 491
BcnI	CCSGG	2 cut(s)	362, 459
BfmI	CTRYAG	1 cut(s)	433
BisI	GCNGC	4 cut(s)	172, 284, 287, 407
BlsI	GCNGC	4 cut(s)	173, 285, 288, 408
Bme1390I	CCNGG	4 cut(s)	335, 362, 459, 491
Bme18I	GGWCC	1 cut(s)	461
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	3 cut(s)	226, 236, 461
BmiI	GGNNCC	4 cut(s)	345, 450, 462, 486
BmrFI	CCNGG	4 cut(s)	335, 362, 459, 491
BmsI	GCATC	4 cut(s)	63, 81, 201, 366
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
Bpu10I	CCTNAGC	1 cut(s)	291
BpuMI	CCSGG	2 cut(s)	362, 459
BsaAI	YACGTR	1 cut(s)	423
BsaBI	GATNNNNATC	1 cut(s)	369
BsaHI	GRCGYC	2 cut(s)	36, 42
BsaJI	CCNNGG	3 cut(s)	133, 339, 489
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	3 cut(s)	302, 340, 458
Bse118I	RCCGGY	2 cut(s)	32, 279
Bse8I	GATNNNNATC	1 cut(s)	369
BseBI	CCWGG	2 cut(s)	335, 491
BseDI	CCNNGG	3 cut(s)	133, 339, 489
BseGI	GGATG	2 cut(s)	72, 357
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	3 cut(s)	302, 340, 458
BseXI	GCAGC	2 cut(s)	273, 393
BseYI	CCCAGC	1 cut(s)	223
Bsh1285I	CGRYCG	1 cut(s)	219
BshFI	GGCC	3 cut(s)	228, 238, 338
BshNI	GGYRCC	1 cut(s)	484
BsiEI	CGRYCG	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	5 cut(s)	33, 280, 362, 446, 458
BsiWI	CGTACG	1 cut(s)	349
BslFI	GGGAC	1 cut(s)	411
BslI	CCNNNNNNNGG	3 cut(s)	302, 340, 458
BsmFI	GGGAC	1 cut(s)	411
BsnI	GGCC	3 cut(s)	228, 238, 338
BsoBI	CYCGRG	1 cut(s)	269
Bsp143I	GATC	1 cut(s)	343
BspACI	CCGC	5 cut(s)	90, 138, 169, 172, 283
BspANI	GGCC	3 cut(s)	228, 238, 338
BspLI	GGNNCC	4 cut(s)	345, 450, 462, 486
BspPI	GGATC	2 cut(s)	338, 351
BspT107I	GGYRCC	1 cut(s)	484
BsrBI	CCGCTC	1 cut(s)	174
BsrFI	RCCGGY	2 cut(s)	32, 279
BssAI	RCCGGY	2 cut(s)	32, 279
BssECI	CCNNGG	3 cut(s)	133, 339, 489
BssMI	GATC	1 cut(s)	343
BssNI	GRCGYC	2 cut(s)	36, 42
BssT1I	CCWWGG	1 cut(s)	339
Bst2UI	CCWGG	2 cut(s)	335, 491
Bst4CI	ACNGT	3 cut(s)	217, 354, 377
BstACI	GRCGYC	2 cut(s)	36, 42
BstBAI	YACGTR	1 cut(s)	423
BstC8I	GCNNGC	3 cut(s)	102, 115, 281
BstDEI	CTNAG	1 cut(s)	291
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	72, 357
BstHHI	GCGC	1 cut(s)	411
BstKTI	GATC	1 cut(s)	346
BstMBI	GATC	1 cut(s)	343
BstMCI	CGRYCG	1 cut(s)	219
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 292, 318
BstNI	CCWGG	2 cut(s)	335, 491
BstSCI	CCNGG	4 cut(s)	333, 360, 457, 489
BstSFI	CTRYAG	1 cut(s)	433
BstV1I	GCAGC	2 cut(s)	273, 393
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	3 cut(s)	228, 238, 338
BtgI	CCRYGG	1 cut(s)	133
BtgZI	GCGATG	2 cut(s)	40, 46
BtsCI	GGATG	2 cut(s)	72, 357
BtsIMutI	CAGTG	1 cut(s)	373
Cac8I	GCNNGC	3 cut(s)	102, 115, 281
CfoI	GCGC	1 cut(s)	411
Cfr10I	RCCGGY	2 cut(s)	32, 279
Cfr13I	GGNCC	3 cut(s)	226, 236, 461
CseI	GACGC	3 cut(s)	25, 31, 106
Csp6I	GTAC	4 cut(s)	80, 331, 350, 485
CspCI	CAANNNNNGTGG	2 cut(s)	371, 406
CviAII	CATG	3 cut(s)	97, 412, 510
CviQI	GTAC	4 cut(s)	80, 331, 350, 485
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
EciI	GGCGGA	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	339
Eco47I	GGWCC	1 cut(s)	461
Eco72I	CACGTG	1 cut(s)	423
Eco88I	CYCGRG	1 cut(s)	269
EcoRII	CCWGG	2 cut(s)	333, 489
EcoT14I	CCWWGG	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	339
FaeI	CATG	3 cut(s)	100, 415, 513
FaiI	YATR	4 cut(s)	98, 245, 413, 511
FaqI	GGGAC	1 cut(s)	411
FatI	CATG	3 cut(s)	96, 411, 509
FblI	GTMKAC	1 cut(s)	396
Fnu4HI	GCNGC	4 cut(s)	172, 284, 287, 407
FokI	GGATG	2 cut(s)	59, 344
Fsp4HI	GCNGC	4 cut(s)	172, 284, 287, 407
FspI	TGCGCA	1 cut(s)	410
GlaI	GCGC	1 cut(s)	410
GluI	GCNGC	4 cut(s)	172, 284, 287, 407
GsaI	CCCAGC	1 cut(s)	227
HaeIII	GGCC	3 cut(s)	228, 238, 338
HapII	CCGG	5 cut(s)	33, 280, 362, 446, 458
HgaI	GACGC	3 cut(s)	25, 31, 106
HhaI	GCGC	1 cut(s)	411
Hin1I	GRCGYC	2 cut(s)	36, 42
Hin1II	CATG	3 cut(s)	100, 415, 513
Hin6I	GCGC	1 cut(s)	409
HinP1I	GCGC	1 cut(s)	409
HinfI	GANTC	3 cut(s)	155, 248, 466
HpaII	CCGG	5 cut(s)	33, 280, 362, 446, 458
Hpy166II	GTNNAC	2 cut(s)	6, 397
Hpy188I	TCNGA	3 cut(s)	328, 465, 478
Hpy8I	GTNNAC	2 cut(s)	6, 397
Hpy99I	CGWCG	5 cut(s)	41, 47, 155, 305, 457
HpyCH4III	ACNGT	3 cut(s)	217, 354, 377
HpyCH4IV	ACGT	2 cut(s)	384, 422
HpyCH4V	TGCA	1 cut(s)	357
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 292, 318
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	2 cut(s)	384, 422
Hsp92I	GRCGYC	2 cut(s)	36, 42
Hsp92II	CATG	3 cut(s)	100, 415, 513
HspAI	GCGC	1 cut(s)	409
KpnI	GGTACC	1 cut(s)	488
KroI	GCCGGC	1 cut(s)	279
KroNI	GCCGGC	1 cut(s)	281
Kzo9I	GATC	1 cut(s)	343
LmnI	GCTCC	3 cut(s)	179, 317, 454
Lsp1109I	GCAGC	2 cut(s)	273, 393
LweI	GCATC	4 cut(s)	63, 81, 201, 366
MaeII	ACGT	2 cut(s)	384, 422
MalI	GATC	1 cut(s)	345
MbiI	CCGCTC	1 cut(s)	174
MboI	GATC	1 cut(s)	343
MboII	GAAGA	1 cut(s)	271
MflI	RGATCY	1 cut(s)	343
MlyI	GAGTC	3 cut(s)	164, 242, 475
MmeI	TCCRAC	2 cut(s)	183, 306
MnlI	CCTC	5 cut(s)	27, 86, 115, 239, 480
MroNI	GCCGGC	1 cut(s)	279
MspI	CCGG	5 cut(s)	33, 280, 362, 446, 458
MspR9I	CCNGG	4 cut(s)	335, 362, 459, 491
MvaI	CCWGG	2 cut(s)	335, 491
MwoI	GCNNNNNNNGC	3 cut(s)	110, 292, 318
NaeI	GCCGGC	1 cut(s)	281
NciI	CCSGG	2 cut(s)	362, 459
NdeII	GATC	1 cut(s)	343
NgoMIV	GCCGGC	1 cut(s)	279
NlaIII	CATG	3 cut(s)	100, 415, 513
NlaIV	GGNNCC	4 cut(s)	345, 450, 462, 486
NmeAIII	GCCGAG	1 cut(s)	229
NsbI	TGCGCA	1 cut(s)	410
PcsI	WCGNNNNNNNCGW	3 cut(s)	63, 390, 461
PdiI	GCCGGC	1 cut(s)	281
Pfl23II	CGTACG	1 cut(s)	349
PfoI	TCCNGGA	1 cut(s)	360
PkrI	GCNGC	4 cut(s)	173, 285, 288, 408
PleI	GAGTC	3 cut(s)	163, 242, 474
PmaCI	CACGTG	1 cut(s)	423
PmlI	CACGTG	1 cut(s)	423
PpsI	GAGTC	3 cut(s)	163, 242, 474
Ppu21I	YACGTR	1 cut(s)	423
Psp6I	CCWGG	2 cut(s)	333, 489
PspCI	CACGTG	1 cut(s)	423
PspFI	CCCAGC	1 cut(s)	223
PspGI	CCWGG	2 cut(s)	333, 489
PspLI	CGTACG	1 cut(s)	349
PspN4I	GGNNCC	4 cut(s)	345, 450, 462, 486
PspPI	GGNCC	3 cut(s)	226, 236, 461
PsuI	RGATCY	1 cut(s)	343
RsaI	GTAC	4 cut(s)	81, 332, 351, 486
RsaNI	GTAC	4 cut(s)	80, 331, 350, 485
SatI	GCNGC	4 cut(s)	172, 284, 287, 407
Sau3AI	GATC	1 cut(s)	343
Sau96I	GGNCC	3 cut(s)	226, 236, 461
SchI	GAGTC	3 cut(s)	164, 242, 475
ScrFI	CCNGG	4 cut(s)	335, 362, 459, 491
SetI	ASST	2 cut(s)	387, 425
SfaNI	GCATC	4 cut(s)	63, 81, 201, 366
SfcI	CTRYAG	1 cut(s)	433
SgrAI	CRCCGGYG	1 cut(s)	32
SinI	GGWCC	1 cut(s)	461
SsiI	CCGC	5 cut(s)	90, 138, 169, 172, 283
StyD4I	CCNGG	4 cut(s)	333, 360, 457, 489
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	3 cut(s)	217, 354, 377
TaiI	ACGT	2 cut(s)	387, 425
TaqI	TCGA	1 cut(s)	231
TauI	GCSGC	2 cut(s)	174, 286
TscAI	CASTG	1 cut(s)	380
TseI	GCWGC	2 cut(s)	286, 406
TspGWI	ACGGA	1 cut(s)	441
TspRI	CASTG	1 cut(s)	380
VpaK11BI	GGWCC	1 cut(s)	461
XmiI	GTMKAC	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.