Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0014030

Physical Location & Seq

Genomic Coordinates Forward (+)

10638224 .. 10639096

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG070300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTTCACGGCTGACCCTCCCATCTCGACCACCGGCGTCGGCTACGGCATCGCCATCGCCGTCAGCATCCTCGTACTCATCTCCGCCATCATGCTCGCCTCTTACGCATGCGTCAAAGTCAAAGCCCACGGCGGTTTTTACAACGACGACTACGACGAGTCCAACTCCCACCGCCGCTCCCCCACCACCACAGGCAACTATTTAGCCGAGCCAATGACGGTCGTGCTGGGCCTCGATGGGCCCACCATAGACTCTTACCCGAAGATAGTTCTCGGCGAAAGCCGGCGGCTGCCTAAGCCGAACGACGGCGTTTGCTCCATCTGCTTGTCGGAGTACCAGGCAAAGGATCCCGTGCGGTGCATCCCGGATTGCCATCACTGTTTCCACGTTGATTGCGTAGACGAATGGCTGCGGATGAGTGCCACGTGTCCCGTCTGTAGAAACTCTCCGGCTCCGTCGCCGGGCCCGAGTCCTCTGTCCGATTTGGTACCCCTGGCACTCCATTATTCTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

171

Amino Acids

18.41

Weight (kDa)

5.57

Isoelectric Point (pI)

55.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	103 - 147	3.6e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	105 - 147	5.3e-13	Ring finger domain
zf-RING_11	PF17123	105 - 133	3.8e-07	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07040
fragaria_vesca	FvH4_7g04010
malus_domestica	MD00G1152800.v1.1 MD03G1294900.v1.1
prunus_persica	Prupe.2G044600_v2.0.a1
pyrus_communis	pycom02g23630
rosa_chinensis	RchiOBHm_Chr1g0327791
rosa_laevigata	RLG00000029964
rosa_multiflora	Rmu_sc0005527.1_g000012
rosa_rugosa	Rorug01G0071000
rosa_samantha	Rh1AG087100 Rh1BG070300 Rh1CG085200 Rh1DG091600 Rh6BG243000 Rh6CG245000
rosa_wichuraiana	Rw1G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	487
AccB1I	GGYRCC	1 cut(s)	487
AccBSI	CCGCTC	1 cut(s)	177
AccI	GTMKAC	1 cut(s)	399
AciI	CCGC	7 cut(s)	84, 132, 172, 175, 286, 355, 412
AclWI	GGATC	2 cut(s)	341, 354
AcvI	CACGTG	1 cut(s)	426
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	3 cut(s)	75, 335, 489
AfiI	CCNNNNNNNGG	3 cut(s)	305, 343, 461
AflIII	ACRYGT	1 cut(s)	425
AjnI	CCWGG	2 cut(s)	336, 492
AlwI	GGATC	2 cut(s)	341, 354
Ama87I	CYCGRG	1 cut(s)	466
AoxI	GGCC	3 cut(s)	229, 239, 463
ApaI	GGGCCC	2 cut(s)	243, 467
ApeKI	GCWGC	2 cut(s)	289, 409
Asp718I	GGTACC	1 cut(s)	487
AspS9I	GGNCC	5 cut(s)	229, 239, 240, 463, 464
AsuC2I	CCSGG	2 cut(s)	365, 462
AvaI	CYCGRG	1 cut(s)	466
BaeGI	GKGCMC	2 cut(s)	243, 467
BamHI	GGATCC	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	487
BanII	GRGCYC	2 cut(s)	243, 467
BbrPI	CACGTG	1 cut(s)	426
BbvI	GCAGC	2 cut(s)	276, 396
BccI	CCATC	6 cut(s)	29, 62, 95, 230, 326, 381
BceAI	ACGGC	5 cut(s)	24, 44, 61, 145, 322
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BciT130I	CCWGG	2 cut(s)	338, 494
BcnI	CCSGG	2 cut(s)	365, 462
BfmI	CTRYAG	1 cut(s)	436
BisI	GCNGC	4 cut(s)	175, 287, 290, 410
BlsI	GCNGC	4 cut(s)	176, 288, 291, 411
Bme1390I	CCNGG	4 cut(s)	338, 365, 462, 494
BmeT110I	CYCGRG	1 cut(s)	466
BmgT120I	GGNCC	5 cut(s)	229, 239, 240, 463, 464
BmiI	GGNNCC	5 cut(s)	241, 348, 453, 465, 489
BmrFI	CCNGG	4 cut(s)	338, 365, 462, 494
BmsI	GCATC	3 cut(s)	57, 75, 369
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
Bpu10I	CCTNAGC	1 cut(s)	294
BpuMI	CCSGG	2 cut(s)	365, 462
BsaAI	YACGTR	2 cut(s)	426, 513
BsaBI	GATNNNNATC	1 cut(s)	372
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	127, 492
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	3 cut(s)	305, 343, 461
Bse118I	RCCGGY	2 cut(s)	32, 282
Bse8I	GATNNNNATC	1 cut(s)	372
BseBI	CCWGG	2 cut(s)	338, 494
BseDI	CCNNGG	2 cut(s)	127, 492
BseGI	GGATG	3 cut(s)	66, 360, 420
BseJI	GATNNNNATC	1 cut(s)	372
BseLI	CCNNNNNNNGG	3 cut(s)	305, 343, 461
BseSI	GKGCMC	2 cut(s)	243, 467
BseXI	GCAGC	2 cut(s)	276, 396
BseYI	CCCAGC	1 cut(s)	226
Bsh1285I	CGRYCG	1 cut(s)	222
BshFI	GGCC	3 cut(s)	231, 241, 465
BshNI	GGYRCC	1 cut(s)	487
BsiEI	CGRYCG	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	466
BsiSI	CCGG	5 cut(s)	33, 283, 365, 449, 461
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	3 cut(s)	305, 343, 461
BsmFI	GGGAC	1 cut(s)	414
BsnI	GGCC	3 cut(s)	231, 241, 465
BsoBI	CYCGRG	1 cut(s)	466
Bsp120I	GGGCCC	2 cut(s)	239, 463
Bsp1286I	GDGCHC	2 cut(s)	243, 467
Bsp143I	GATC	1 cut(s)	346
BspACI	CCGC	7 cut(s)	84, 132, 172, 175, 286, 355, 412
BspANI	GGCC	3 cut(s)	231, 241, 465
BspLI	GGNNCC	5 cut(s)	241, 348, 453, 465, 489
BspPI	GGATC	2 cut(s)	341, 354
BspT107I	GGYRCC	1 cut(s)	487
BsrBI	CCGCTC	1 cut(s)	177
BsrFI	RCCGGY	2 cut(s)	32, 282
BssAI	RCCGGY	2 cut(s)	32, 282
BssECI	CCNNGG	2 cut(s)	127, 492
BssMI	GATC	1 cut(s)	346
BssNI	GRCGYC	1 cut(s)	36
Bst2UI	CCWGG	2 cut(s)	338, 494
Bst4CI	ACNGT	2 cut(s)	220, 380
BstACI	GRCGYC	1 cut(s)	36
BstBAI	YACGTR	2 cut(s)	426, 513
BstC8I	GCNNGC	3 cut(s)	96, 109, 284
BstDEI	CTNAG	1 cut(s)	294
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	3 cut(s)	66, 360, 420
BstKTI	GATC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	346
BstMCI	CGRYCG	1 cut(s)	222
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 295, 321
BstNI	CCWGG	2 cut(s)	338, 494
BstNSI	RCATGY	1 cut(s)	111
BstSCI	CCNGG	4 cut(s)	336, 363, 460, 492
BstSFI	CTRYAG	1 cut(s)	436
BstSLI	GKGCMC	2 cut(s)	243, 467
BstV1I	GCAGC	2 cut(s)	276, 396
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BsuRI	GGCC	3 cut(s)	231, 241, 465
BtgI	CCRYGG	1 cut(s)	127
BtgZI	GCGATG	2 cut(s)	34, 40
BtsCI	GGATG	3 cut(s)	66, 360, 420
BtsIMutI	CAGTG	1 cut(s)	376
Cac8I	GCNNGC	3 cut(s)	96, 109, 284
Cfr10I	RCCGGY	2 cut(s)	32, 282
Cfr13I	GGNCC	5 cut(s)	229, 239, 240, 463, 464
CseI	GACGC	2 cut(s)	25, 100
Csp6I	GTAC	3 cut(s)	74, 334, 488
CspCI	CAANNNNNGTGG	2 cut(s)	374, 409
CviAII	CATG	2 cut(s)	91, 108
CviQI	GTAC	3 cut(s)	74, 334, 488
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
EciI	GGCGGA	1 cut(s)	73
Eco24I	GRGCYC	2 cut(s)	243, 467
Eco72I	CACGTG	1 cut(s)	426
Eco88I	CYCGRG	1 cut(s)	466
EcoRII	CCWGG	2 cut(s)	336, 492
EcoT38I	GRGCYC	2 cut(s)	243, 467
FaeI	CATG	2 cut(s)	94, 111
FaiI	YATR	3 cut(s)	92, 109, 248
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	2 cut(s)	90, 107
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	4 cut(s)	175, 287, 290, 410
FokI	GGATG	3 cut(s)	53, 347, 427
FriOI	GRGCYC	2 cut(s)	243, 467
Fsp4HI	GCNGC	4 cut(s)	175, 287, 290, 410
GluI	GCNGC	4 cut(s)	175, 287, 290, 410
GsaI	CCCAGC	1 cut(s)	230
HaeIII	GGCC	3 cut(s)	231, 241, 465
HapII	CCGG	5 cut(s)	33, 283, 365, 449, 461
HgaI	GACGC	2 cut(s)	25, 100
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	2 cut(s)	94, 111
HinfI	GANTC	3 cut(s)	158, 251, 469
HpaII	CCGG	5 cut(s)	33, 283, 365, 449, 461
Hpy166II	GTNNAC	2 cut(s)	6, 400
Hpy188I	TCNGA	2 cut(s)	331, 481
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	2 cut(s)	6, 400
Hpy99I	CGWCG	5 cut(s)	41, 149, 158, 308, 460
HpyCH4III	ACNGT	2 cut(s)	220, 380
HpyCH4IV	ACGT	3 cut(s)	387, 425, 512
HpyCH4V	TGCA	1 cut(s)	360
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 295, 321
HpyF3I	CTNAG	1 cut(s)	294
HpySE526I	ACGT	3 cut(s)	387, 425, 512
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	94, 111
KpnI	GGTACC	1 cut(s)	491
KroI	GCCGGC	1 cut(s)	282
KroNI	GCCGGC	1 cut(s)	284
Kzo9I	GATC	1 cut(s)	346
LmnI	GCTCC	3 cut(s)	182, 320, 457
Lsp1109I	GCAGC	2 cut(s)	276, 396
LweI	GCATC	3 cut(s)	57, 75, 369
MaeII	ACGT	3 cut(s)	387, 425, 512
MalI	GATC	1 cut(s)	348
MbiI	CCGCTC	1 cut(s)	177
MboI	GATC	1 cut(s)	346
MboII	GAAGA	1 cut(s)	274
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	2 cut(s)	243, 467
MlyI	GAGTC	3 cut(s)	167, 245, 478
MmeI	TCCRAC	2 cut(s)	186, 309
MnlI	CCTC	5 cut(s)	27, 80, 109, 242, 483
MroNI	GCCGGC	1 cut(s)	282
MspI	CCGG	5 cut(s)	33, 283, 365, 449, 461
MspR9I	CCNGG	4 cut(s)	338, 365, 462, 494
MvaI	CCWGG	2 cut(s)	338, 494
MwoI	GCNNNNNNNGC	3 cut(s)	104, 295, 321
NaeI	GCCGGC	1 cut(s)	284
NciI	CCSGG	2 cut(s)	365, 462
NdeII	GATC	1 cut(s)	346
NgoMIV	GCCGGC	1 cut(s)	282
NlaIII	CATG	2 cut(s)	94, 111
NlaIV	GGNNCC	5 cut(s)	241, 348, 453, 465, 489
NmeAIII	GCCGAG	2 cut(s)	232, 252
NspI	RCATGY	1 cut(s)	111
PaeI	GCATGC	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	5 cut(s)	57, 150, 153, 393, 464
PdiI	GCCGGC	1 cut(s)	284
PfoI	TCCNGGA	1 cut(s)	363
PkrI	GCNGC	4 cut(s)	176, 288, 291, 411
PleI	GAGTC	3 cut(s)	166, 245, 477
PmaCI	CACGTG	1 cut(s)	426
PmlI	CACGTG	1 cut(s)	426
PpsI	GAGTC	3 cut(s)	166, 245, 477
Ppu21I	YACGTR	2 cut(s)	426, 513
Psp6I	CCWGG	2 cut(s)	336, 492
PspCI	CACGTG	1 cut(s)	426
PspFI	CCCAGC	1 cut(s)	226
PspGI	CCWGG	2 cut(s)	336, 492
PspN4I	GGNNCC	5 cut(s)	241, 348, 453, 465, 489
PspOMI	GGGCCC	2 cut(s)	239, 463
PspPI	GGNCC	5 cut(s)	229, 239, 240, 463, 464
PsuI	RGATCY	1 cut(s)	346
RsaI	GTAC	3 cut(s)	75, 335, 489
RsaNI	GTAC	3 cut(s)	74, 334, 488
SatI	GCNGC	4 cut(s)	175, 287, 290, 410
Sau3AI	GATC	1 cut(s)	346
Sau96I	GGNCC	5 cut(s)	229, 239, 240, 463, 464
SchI	GAGTC	3 cut(s)	167, 245, 478
ScrFI	CCNGG	4 cut(s)	338, 365, 462, 494
SduI	GDGCHC	2 cut(s)	243, 467
SetI	ASST	3 cut(s)	390, 428, 515
SfaNI	GCATC	3 cut(s)	57, 75, 369
SfcI	CTRYAG	1 cut(s)	436
SgrAI	CRCCGGYG	1 cut(s)	32
SphI	GCATGC	1 cut(s)	111
SsiI	CCGC	7 cut(s)	84, 132, 172, 175, 286, 355, 412
StyD4I	CCNGG	4 cut(s)	336, 363, 460, 492
TaaI	ACNGT	2 cut(s)	220, 380
TaiI	ACGT	3 cut(s)	390, 428, 515
TaqI	TCGA	2 cut(s)	26, 234
TauI	GCSGC	2 cut(s)	177, 289
TscAI	CASTG	1 cut(s)	383
TseI	GCWGC	2 cut(s)	289, 409
TspGWI	ACGGA	1 cut(s)	444
TspRI	CASTG	1 cut(s)	383
XceI	RCATGY	1 cut(s)	111
XmiI	GTMKAC	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.