Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0014030

Physical Location & Seq

Genomic Coordinates Reverse (-)

11592187 .. 11599275

Gene Structure 7089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0071000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2958 bp

ATGGATGATAGTCTATACGACGAGTTCGGGAACTATATAGGACCCGAAATTGAGTCTGACCAGGAGAGTGATAGGGAGGAAGAAGATGAGGAGCTTCCGGATAGGTTAGAAGATAGAGGTGCGGCGTCTGACGGTGATGATGCTCCGAATGGGTGGCTGACTGCCTCCAATGATGTAGATATGGACAACCAGGTTGTTCTTGCTGAGGATAAGAAGTATTATCCTACAGCGGAGGAGGTGTACGGTGAAGATGTCGAGACGTTGGTCATGGATGAAGATGCACAGCCCCTTGAACAGCCGATTATCAAGCCGGTTCGGAATATTAAGTTTGAGGTTGGTGTTAAGGACTCCTCGACGTATGTGTCGACGCAGTTTCTTGTTGGTCTTATGTCGAACCCTGCTCTGGTTCGGAATGTGGCGCTGGTGGGGCACTTGCAGCATGGGAAGACGGTGTTTATGGATATGTTGGTGGAACAGACTCATCATATGTCTACTTTTGATGCAAATAGTGATAAGCACATGAGGTACACTGATACGAGGATTGATGAACAAGAGAGGAGGATATCTATTAAGGCTGTTCCCATGTCCCTTGTACTTGAGGATAGCAATTCAAAGTCGTACCTGTGCAATGTCATGGATACTCCTGGTCATGTCAATTTCTCTGATGAAATGACTGCTTCACTTAGGCTCGCTGATGGTGCTGTCCTCATTGTTGATGCTGCAGAAGGGATGATGGTAAATACTGAGAGGGCTATACGCCATGCAATCCAAGAGCGCCTACCAATTGTGGTTGTAATCAACAAGGTTGACAGGTTGATAACAGAACTTAAATTGCCCCCAAGGGATGCTTACTTCAAGCTTAGGCATACTCTGGAAGTGATTAATAACCACATAACGGCTGCCTCTTCAACTGCTGGTCATGTACAAGTTATTGATCCTGTTGCTGGAAATGTATGCTTTGCAAGCGCTACTGCAGGATGGTCGTTCACGTTGCAATCATTTGCGAAGCTATATGTTAAGCTTCATGGGATCGCTTTTGACGCGGATCAGTTTGCTTCTCGTCTATGGGGAGATATGTACTATCATCCTGAGGACAGGGCTTTCAGGAGAAAACCCCCTGCAAGTGGAGGAGAAAGGTCGTTTGTCCAGTTTGTGCTTGAACCCCTGTATAAAATATATAGCCAGGTGATTGGAGAACATAAAAAGAGTGTTGAGGCAACTCTTGCTGAACTTGGTGTCACCCTTAGCAATGCAGCTTACAAATTGAATGTTAGGCCTCTACTGAGGTTGGCTTGTAGCTCGGTTTTTGGATCTGCCTCGGGCTTCACTGATATGCTTGTGCAACATATTCCTTCTCCTAAAGATGCTGCAACAAGGAAAGTCGACCACACATATACTGGACCAAAAGACTCTTTGATTTACAAAGCCATGAAAACTTGTGATCCCAATGGCCCGTTGATGGTAAATGTTACCAAGCTGTATCCCAAGTCCGATTGTAGTGTGTTCGATGCATTTGGTAGGGTATACAGTGGCAAGATTCAGACAGGACAGTCAGTACGAGTATTGGGAGAAGGGTATTCACCTGACGATGAGGAGGACATGACAGTCAAAGAAGTAACGAAGCTATGGCTTTACCAAGCGCGAGATAGGATACCTATAGCTGAAGCTCCTCCTGGTACTTGGGTTCTCATCGAAGGTGTGGATGCTTCCATAATGAAAACTGCCACTCTGTGTAATGAGAGTTATGATGAGGATGTATACATATTCCGTCCTCTTCAGTTCAATACACTGCCAGTGGTGAAAACGGCAACTGAGCCTCTAAATCCCAGTGAGTTGCCAAAAATGGTGGAGGGTCTTAGAAAGATCAGCAAGAGTTATCCTCTTGCCATCACCAAAGTTGAGGAGTCTGGGGAGCACACAATCTTAGGTACAGGAGAACTGTACTTGGATTCCATCATGAAGGACCTCAGAGAGCTCTACTCCGAAGTAGAAGTCAAGGTTGCAGATCCTGTTGTTTCATTCTGCGAAACAGTTGTGGAATCTTCATCAATGAAGTGTTTTGCTGAAACACCAAACAAGAAGAATAAAATTACTATGATTGCAGAGCCATTAGAGAGAGGACTTGCGGAGGACATTGAGAAAGGTGTTGTAAGCATTGATTGGTCTAGGAGAGATATAGGTAATTTCTTCCAGACTAGGTATGAGTGGGATGTTCTTGCTGCACGGTCCATATGGGCATTCGGTCCTGATAAGCAGGGACCCAACATACTACTTGATGACACACTTTCAAGCGAAGTTGACAAGAGCTTGCTGAATGCTGTGAAAGACTCCATTGTGCAAGGGTTTCAGTGGGGTGCTCGAGAAGGACCTCTGTGTGATGAACCCATCAGAAATGTTAAGTTCAAGATAGTTGATGCAAGGATTGCACCTGAGCCGTTGCATCGTGGATCTGGTCAAATCATTCCCACATCTCGACGTGTGGCCTATTCATCTTTCCTAATGGCAACCCCACGGCTCATGGAGCCAGTATATTATGTGGAGATACAAACGCCAATCGACTGTATATCTGCAATCTACACTGTTTTATCTCGCAGGCGTGGACATGTTACAGCCGATGTTCCTCAACCCGGGACCCCAGCTTACATCGTTAAGGCATTTTTACCCGTCATAGAATCGTTTGGTTTTGAGACGGACTTGAGGTACCATACTCAAGGACAGGCTTTTTGCCTCTCAGTCTTTGATCATTGGGCTATAGTTCCTGGGGATCCTCTTGACAAGAGTATTGTTCTGCGACCACTTGAACCCGCACCGATTCAGCACCTGGCTCGTGAATTTATGGTCAAGACAAGGCGTAGAAAGGGAATGAGCGAGGATGTGAGCATCAGCAAATTTTTCGATGAGGCCATGATGGTGGAACTGGCTCAGCAGGAAGCTGATATTCACCAGCAAATGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

985

Amino Acids

110.28

Weight (kDa)

5.01

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EFTUD2	PF16004	3 - 116	2.9e-36	116 kDa U5 small nuclear ribonucleoprotein component N-terminus
GTP_EFTU	PF00009	136 - 330	6.7e-42	Elongation factor Tu GTP binding domain
GTP_EFTU_D2	PF03144	504 - 578	2.8e-10	Elongation factor Tu domain 2
EFG_IV	PF03764	724 - 835	1.1e-18	Elongation factor G, domain IV
EFG_C	PF00679	838 - 926	3.7e-22	Elongation factor G C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07040
fragaria_vesca	FvH4_7g04010
malus_domestica	MD00G1152800.v1.1 MD03G1294900.v1.1
prunus_persica	Prupe.2G044600_v2.0.a1
pyrus_communis	pycom02g23630
rosa_chinensis	RchiOBHm_Chr1g0327791
rosa_laevigata	RLG00000029964
rosa_multiflora	Rmu_sc0005527.1_g000012
rosa_rugosa	Rorug01G0071000
rosa_samantha	Rh1AG087100 Rh1BG070300 Rh1CG085200 Rh1DG091600 Rh6BG243000 Rh6CG245000
rosa_wichuraiana	Rw1G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	361, 1549, 1604
Acc65I	GGTACC	1 cut(s)	2700
AccB1I	GGYRCC	1 cut(s)	2700
AccI	GTMKAC	5 cut(s)	365, 491, 1383, 1524, 1758
AccII	CGCG	2 cut(s)	1043, 1642
AccIII	TCCGGA	1 cut(s)	97
AciI	CCGC	5 cut(s)	122, 230, 1043, 2126, 2805
AclWI	GGATC	9 cut(s)	929, 1037, 1053, 1318, 1436, 2000, 2455, 2759, 2772
AcsI	RAATTY	2 cut(s)	2831, 2888
AcuI	CTGAAG	2 cut(s)	1683, 1760
AcyI	GRCGYC	1 cut(s)	125
AdeI	CACNNNGTG	1 cut(s)	1731
AfeI	AGCGCT	1 cut(s)	967
AfiI	CCNNNNNNNGG	6 cut(s)	403, 895, 944, 1124, 1459, 2627
AflIII	ACRYGT	2 cut(s)	2476, 2602
AjiI	CACGTC	1 cut(s)	2477
AjnI	CCWGG	7 cut(s)	60, 189, 643, 1182, 1672, 2758, 2820
Alw21I	GWGCWC	3 cut(s)	1917, 1977, 2359
Alw26I	GTCTC	2 cut(s)	251, 2681
AlwI	GGATC	9 cut(s)	929, 1037, 1053, 1318, 1436, 2000, 2455, 2759, 2772
AlwNI	CAGNNNCTG	2 cut(s)	2009, 2821
Ama87I	CYCGRG	3 cut(s)	1318, 2358, 2627
Aor13HI	TCCGGA	1 cut(s)	97
Aor51HI	AGCGCT	1 cut(s)	967
AoxI	GGCC	4 cut(s)	1274, 1450, 2481, 2901
ApeKI	GCWGC	6 cut(s)	436, 719, 899, 1253, 1367, 2219
ApoI	RAATTY	2 cut(s)	2831, 2888
ArsI	GACNNNNNNTTYG	4 cut(s)	1977, 2009, 2706, 2738
AseI	ATTAAT	1 cut(s)	882
Asp718I	GGTACC	1 cut(s)	2700
AspLEI	GCGC	4 cut(s)	421, 777, 968, 1642
AspS9I	GGNCC	9 cut(s)	41, 1400, 1451, 1963, 2226, 2243, 2258, 2366, 2631
AsuC2I	CCSGG	2 cut(s)	2628, 2629
AsuHPI	GGTGA	8 cut(s)	146, 257, 1198, 1231, 1572, 1810, 1882, 2933
AvaI	CYCGRG	3 cut(s)	1318, 2358, 2627
AvaII	GGWCC	8 cut(s)	41, 1400, 1963, 2226, 2243, 2258, 2366, 2631
AxyI	CCTNAGG	1 cut(s)	1089
BaeGI	GKGCMC	1 cut(s)	432
BaeI	ACNNNNGTAYC	2 cut(s)	1668, 1701
BamHI	GGATCC	1 cut(s)	2764
BanI	GGYRCC	1 cut(s)	2700
BanII	GRGCYC	1 cut(s)	1977
BauI	CACGAG	1 cut(s)	2826
BbsI	GAAGAC	1 cut(s)	452
Bbv12I	GWGCWC	3 cut(s)	1917, 1977, 2359
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	6 cut(s)	448, 706, 886, 1265, 1354, 2206
BccI	CCATC	8 cut(s)	689, 727, 972, 1453, 1895, 1961, 2393, 2902
BceAI	ACGGC	4 cut(s)	912, 1821, 2419, 2528
BcgI	CGANNNNNNTGC	6 cut(s)	963, 997, 2807, 2841, 2875, 2909
BciT130I	CCWGG	7 cut(s)	62, 191, 645, 1184, 1674, 2760, 2822
BciVI	GTATCC	3 cut(s)	631, 1491, 1644
BclI	TGATCA	1 cut(s)	2740
BcnI	CCSGG	2 cut(s)	2628, 2629
BcoDI	GTCTC	2 cut(s)	251, 2681
BfaI	CTAG	2 cut(s)	2166, 2196
BfmI	CTRYAG	5 cut(s)	225, 720, 972, 1656, 2751
BfoI	RGCGCY	3 cut(s)	422, 778, 969
BfuI	GTATCC	3 cut(s)	631, 1491, 1644
BisI	GCNGC	7 cut(s)	123, 437, 720, 900, 1254, 1368, 2220
BlpI	GCTNAGC	1 cut(s)	2922
BlsI	GCNGC	7 cut(s)	124, 438, 721, 901, 1255, 1369, 2221
Bme1390I	CCNGG	9 cut(s)	62, 191, 645, 1184, 1674, 2628, 2629, 2760, 2822
Bme18I	GGWCC	8 cut(s)	41, 1400, 1963, 2226, 2243, 2258, 2366, 2631
BmeT110I	CYCGRG	3 cut(s)	1318, 2358, 2627
BmgBI	CACGTC	1 cut(s)	2477
BmgT120I	GGNCC	9 cut(s)	41, 1400, 1451, 1963, 2226, 2243, 2258, 2366, 2631
BmiI	GGNNCC	8 cut(s)	43, 2259, 2260, 2523, 2632, 2633, 2702, 2766
BmrFI	CCNGG	9 cut(s)	62, 191, 645, 1184, 1674, 2628, 2629, 2760, 2822
BmrI	ACTGGG	1 cut(s)	1821
BmuI	ACTGGG	1 cut(s)	1821
BoxI	GACNNNNGTC	1 cut(s)	263
BpiI	GAAGAC	1 cut(s)	452
BplI	GAGNNNNNCTC	4 cut(s)	1864, 1896, 1964, 1996
Bpu10I	CCTNAGC	4 cut(s)	204, 860, 1244, 2430
Bpu1102I	GCTNAGC	1 cut(s)	2922
BpuEI	CTTGAG	3 cut(s)	617, 2694, 2716
BpuMI	CCSGG	2 cut(s)	2628, 2629
BsaHI	GRCGYC	1 cut(s)	125
BsaJI	CCNNGG	5 cut(s)	839, 1317, 2510, 2627, 2759
BsaWI	WCCGGW	1 cut(s)	97
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	6 cut(s)	403, 895, 944, 1124, 1459, 2627
Bse118I	RCCGGY	1 cut(s)	310
Bse1I	ACTGG	6 cut(s)	1147, 1402, 1793, 1827, 2525, 2922
Bse21I	CCTNAGG	1 cut(s)	1089
Bse3DI	GCAATG	2 cut(s)	634, 1255
BseAI	TCCGGA	1 cut(s)	97
BseBI	CCWGG	7 cut(s)	62, 191, 645, 1184, 1674, 2760, 2822
BseDI	CCNNGG	5 cut(s)	839, 1317, 2510, 2627, 2759
BseLI	CCNNNNNNNGG	6 cut(s)	403, 895, 944, 1124, 1459, 2627
BseMI	GCAATG	2 cut(s)	634, 1255
BseMII	CTCAG	9 cut(s)	195, 735, 1080, 1274, 1803, 1981, 2421, 2745, 2936
BseNI	ACTGG	6 cut(s)	1147, 1402, 1793, 1827, 2525, 2922
BseRI	GAGGAG	8 cut(s)	104, 248, 340, 571, 1143, 1607, 1659, 1916
BseSI	GKGCMC	1 cut(s)	432
BseXI	GCAGC	6 cut(s)	448, 706, 886, 1265, 1354, 2206
BseYI	CCCAGC	1 cut(s)	2635
BsgI	GTGCAG	1 cut(s)	2205
Bsh1236I	CGCG	2 cut(s)	1043, 1642
BshFI	GGCC	4 cut(s)	1276, 1452, 2483, 2903
BshNI	GGYRCC	1 cut(s)	2700
BsiHKAI	GWGCWC	3 cut(s)	1917, 1977, 2359
BsiHKCI	CYCGRG	3 cut(s)	1318, 2358, 2627
BsiSI	CCGG	3 cut(s)	98, 311, 2628
BslFI	GGGAC	3 cut(s)	571, 2271, 2644
BslI	CCNNNNNNNGG	6 cut(s)	403, 895, 944, 1124, 1459, 2627
BsmAI	GTCTC	2 cut(s)	251, 2681
BsmBI	CGTCTC	2 cut(s)	251, 2681
BsmFI	GGGAC	3 cut(s)	571, 2271, 2644
BsmI	GAATGC	2 cut(s)	2237, 2320
BsnI	GGCC	4 cut(s)	1276, 1452, 2483, 2903
BsoBI	CYCGRG	3 cut(s)	1318, 2358, 2627
Bsp1286I	GDGCHC	4 cut(s)	432, 1917, 1977, 2359
Bsp13I	TCCGGA	1 cut(s)	97
Bsp1407I	TGTACA	1 cut(s)	922
Bsp1720I	GCTNAGC	1 cut(s)	2922
BspACI	CCGC	5 cut(s)	122, 230, 1043, 2126, 2805
BspANI	GGCC	4 cut(s)	1276, 1452, 2483, 2903
BspCNI	CTCAG	9 cut(s)	196, 736, 1081, 1275, 1804, 1980, 2422, 2744, 2935
BspEI	TCCGGA	1 cut(s)	97
BspFNI	CGCG	2 cut(s)	1043, 1642
BspHI	TCATGA	1 cut(s)	1956
BspLI	GGNNCC	8 cut(s)	43, 2259, 2260, 2523, 2632, 2633, 2702, 2766
BspMAI	CTGCAG	2 cut(s)	724, 976
BspPI	GGATC	9 cut(s)	929, 1037, 1053, 1318, 1436, 2000, 2455, 2759, 2772
BspT107I	GGYRCC	1 cut(s)	2700
BsrDI	GCAATG	2 cut(s)	634, 1255
BsrFI	RCCGGY	1 cut(s)	310
BsrGI	TGTACA	1 cut(s)	922
BsrI	ACTGG	6 cut(s)	1147, 1402, 1793, 1827, 2525, 2922
BssAI	RCCGGY	1 cut(s)	310
BssECI	CCNNGG	5 cut(s)	839, 1317, 2510, 2627, 2759
BssNAI	GTATAC	2 cut(s)	1525, 1759
BssNI	GRCGYC	1 cut(s)	125
BssSI	CACGAG	1 cut(s)	2826
BssT1I	CCWWGG	1 cut(s)	839
Bst1107I	GTATAC	2 cut(s)	1525, 1759
Bst2BI	CACGAG	1 cut(s)	2826
Bst2UI	CCWGG	7 cut(s)	62, 191, 645, 1184, 1674, 2760, 2822
Bst6I	CTCTTC	2 cut(s)	910, 1779
BstACI	GRCGYC	1 cut(s)	125
BstAPI	GCANNNNNTGC	2 cut(s)	1223, 2423
BstAUI	TGTACA	1 cut(s)	922
BstC8I	GCNNGC	4 cut(s)	690, 964, 2309, 2594
BstDSI	CCRYGG	1 cut(s)	2510
BstFNI	CGCG	2 cut(s)	1043, 1642
BstH2I	RGCGCY	3 cut(s)	422, 778, 969
BstHHI	GCGC	4 cut(s)	421, 777, 968, 1642
BstMAI	GTCTC	2 cut(s)	251, 2681
BstMWI	GCNNNNNNNGC	8 cut(s)	427, 436, 698, 963, 1040, 1223, 2423, 2521
BstNI	CCWGG	7 cut(s)	62, 191, 645, 1184, 1674, 2760, 2822
BstNSI	RCATGY	1 cut(s)	2606
BstPAI	GACNNNNGTC	1 cut(s)	263
BstSCI	CCNGG	9 cut(s)	60, 189, 643, 1182, 1672, 2626, 2627, 2758, 2820
BstSFI	CTRYAG	5 cut(s)	225, 720, 972, 1656, 2751
BstSLI	GKGCMC	1 cut(s)	432
BstUI	CGCG	2 cut(s)	1043, 1642
BstV1I	GCAGC	6 cut(s)	448, 706, 886, 1265, 1354, 2206
BstV2I	GAAGAC	1 cut(s)	452
BstX2I	RGATCY	4 cut(s)	1310, 2005, 2447, 2764
BstXI	CCANNNNNNTGG	2 cut(s)	1190, 2911
BstYI	RGATCY	4 cut(s)	1310, 2005, 2447, 2764
BstZ17I	GTATAC	2 cut(s)	1525, 1759
Bsu36I	CCTNAGG	1 cut(s)	1089
BsuI	GTATCC	3 cut(s)	631, 1491, 1644
BsuRI	GGCC	4 cut(s)	1276, 1452, 2483, 2903
BtgI	CCRYGG	1 cut(s)	2510
BtrI	CACGTC	1 cut(s)	2477
BtsI	GCAGTG	1 cut(s)	1787
BtsIMutI	CAGTG	8 cut(s)	528, 1326, 1534, 1787, 1800, 1834, 2354, 2577
Cac8I	GCNNGC	4 cut(s)	690, 964, 2309, 2594
CaiI	CAGNNNCTG	2 cut(s)	2009, 2821
CciI	TCATGA	1 cut(s)	1956
CfoI	GCGC	4 cut(s)	421, 777, 968, 1642
Cfr10I	RCCGGY	1 cut(s)	310
Cfr13I	GGNCC	9 cut(s)	41, 1400, 1451, 1963, 2226, 2243, 2258, 2366, 2631
Cfr9I	CCCGGG	1 cut(s)	2627
CseI	GACGC	3 cut(s)	114, 376, 1049
CsiI	ACCWGGT	1 cut(s)	189
CspCI	CAANNNNNGTGG	2 cut(s)	1827, 1862
DraIII	CACNNNGTG	1 cut(s)	1731
DrdI	GACNNNNNNGTC	3 cut(s)	361, 1549, 1604
DseDI	GACNNNNNNGTC	3 cut(s)	361, 1549, 1604
Eam1104I	CTCTTC	2 cut(s)	910, 1779
EarI	CTCTTC	2 cut(s)	910, 1779
Ecl136II	GAGCTC	1 cut(s)	1975
Eco130I	CCWWGG	1 cut(s)	839
Eco147I	AGGCCT	1 cut(s)	1276
Eco24I	GRGCYC	1 cut(s)	1977
Eco32I	GATATC	1 cut(s)	564
Eco47I	GGWCC	8 cut(s)	41, 1400, 1963, 2226, 2243, 2258, 2366, 2631
Eco47III	AGCGCT	1 cut(s)	967
Eco53kI	GAGCTC	1 cut(s)	1975
Eco57I	CTGAAG	2 cut(s)	1683, 1760
Eco81I	CCTNAGG	1 cut(s)	1089
Eco88I	CYCGRG	3 cut(s)	1318, 2358, 2627
EcoICRI	GAGCTC	1 cut(s)	1975
EcoO109I	RGGNCCY	5 cut(s)	41, 1963, 2258, 2366, 2631
EcoRII	CCWGG	7 cut(s)	60, 189, 643, 1182, 1672, 2758, 2820
EcoRV	GATATC	1 cut(s)	564
EcoT14I	CCWWGG	1 cut(s)	839
EcoT22I	ATGCAT	1 cut(s)	1513
EcoT38I	GRGCYC	1 cut(s)	1977
ErhI	CCWWGG	1 cut(s)	839
Esp3I	CGTCTC	2 cut(s)	251, 2681
FalI	AAGNNNNNCTT	2 cut(s)	832, 864
FaqI	GGGAC	3 cut(s)	571, 2271, 2644
FauI	CCCGC	1 cut(s)	2812
FauNDI	CATATG	2 cut(s)	486, 2231
FbaI	TGATCA	1 cut(s)	2740
FblI	GTMKAC	5 cut(s)	365, 491, 1383, 1524, 1758
Fnu4HI	GCNGC	7 cut(s)	123, 437, 720, 900, 1254, 1368, 2220
FriOI	GRGCYC	1 cut(s)	1977
Fsp4HI	GCNGC	7 cut(s)	123, 437, 720, 900, 1254, 1368, 2220
FspBI	CTAG	2 cut(s)	2166, 2196
GlaI	GCGC	4 cut(s)	420, 776, 967, 1641
GluI	GCNGC	7 cut(s)	123, 437, 720, 900, 1254, 1368, 2220
GsaI	CCCAGC	1 cut(s)	2639
HaeII	RGCGCY	3 cut(s)	422, 778, 969
HaeIII	GGCC	4 cut(s)	1276, 1452, 2483, 2903
HapII	CCGG	3 cut(s)	98, 311, 2628
HgaI	GACGC	3 cut(s)	114, 376, 1049
HhaI	GCGC	4 cut(s)	421, 777, 968, 1642
Hin1I	GRCGYC	1 cut(s)	125
Hin6I	GCGC	4 cut(s)	419, 775, 966, 1640
HinP1I	GCGC	4 cut(s)	419, 775, 966, 1640
HincII	GTYRAC	4 cut(s)	366, 808, 1384, 2299
HindII	GTYRAC	4 cut(s)	366, 808, 1384, 2299
HindIII	AAGCTT	2 cut(s)	857, 1019
HpaII	CCGG	3 cut(s)	98, 311, 2628
HphI	GGTGA	8 cut(s)	146, 257, 1198, 1231, 1572, 1810, 1882, 2933
Hpy99I	CGWCG	4 cut(s)	23, 358, 370, 2478
HpyAV	CCTTC	6 cut(s)	719, 1362, 1565, 1688, 1954, 2357
HpyCH4IV	ACGT	4 cut(s)	260, 356, 989, 2476
HpyF10VI	GCNNNNNNNGC	8 cut(s)	427, 436, 698, 963, 1040, 1223, 2423, 2521
HpySE526I	ACGT	4 cut(s)	260, 356, 989, 2476
Hsp92I	GRCGYC	1 cut(s)	125
HspAI	GCGC	4 cut(s)	419, 775, 966, 1640
KflI	GGGWCCC	2 cut(s)	2258, 2631
Kpn2I	TCCGGA	1 cut(s)	97
KpnI	GGTACC	1 cut(s)	2704
Ksp22I	TGATCA	1 cut(s)	2740
LmnI	GCTCC	5 cut(s)	91, 148, 1672, 1912, 2521
Lsp1109I	GCAGC	6 cut(s)	448, 706, 886, 1265, 1354, 2206
MabI	ACCWGGT	1 cut(s)	189
MaeI	CTAG	2 cut(s)	2166, 2196
MaeII	ACGT	4 cut(s)	260, 356, 989, 2476
MaeIII	GTNAC	4 cut(s)	1237, 1468, 1615, 2605
MfeI	CAATTG	1 cut(s)	783
MflI	RGATCY	4 cut(s)	1310, 2005, 2447, 2764
MhlI	GDGCHC	4 cut(s)	432, 1917, 1977, 2359
MlyI	GAGTC	6 cut(s)	62, 341, 472, 1403, 1913, 2321
Mph1103I	ATGCAT	1 cut(s)	1513
MroI	TCCGGA	1 cut(s)	97
MseI	TTAA	8 cut(s)	324, 342, 570, 828, 882, 1017, 2397, 2649
MslI	CAYNNNNRTG	2 cut(s)	1331, 2909
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	3 cut(s)	98, 311, 2628
MspR9I	CCNGG	9 cut(s)	62, 191, 645, 1184, 1674, 2628, 2629, 2760, 2822
MunI	CAATTG	1 cut(s)	783
Mva1269I	GAATGC	2 cut(s)	2237, 2320
MvaI	CCWGG	7 cut(s)	62, 191, 645, 1184, 1674, 2760, 2822
MvnI	CGCG	2 cut(s)	1043, 1642
MwoI	GCNNNNNNNGC	8 cut(s)	427, 436, 698, 963, 1040, 1223, 2423, 2521
NciI	CCSGG	2 cut(s)	2628, 2629
NdeI	CATATG	2 cut(s)	486, 2231
NlaIV	GGNNCC	8 cut(s)	43, 2259, 2260, 2523, 2632, 2633, 2702, 2766
NmuCI	GTSAC	1 cut(s)	1237
NsiI	ATGCAT	1 cut(s)	1513
NspI	RCATGY	1 cut(s)	2606
PaeR7I	CTCGAG	1 cut(s)	2358
PagI	TCATGA	1 cut(s)	1956
PceI	AGGCCT	1 cut(s)	1276
PciI	ACATGT	1 cut(s)	2602
PcsI	WCGNNNNNNNCGW	1 cut(s)	362
PctI	GAATGC	2 cut(s)	2237, 2320
PfeI	GAWTC	5 cut(s)	1537, 1949, 2039, 2672, 2812
PkrI	GCNGC	7 cut(s)	124, 438, 721, 901, 1255, 1369, 2221
PleI	GAGTC	6 cut(s)	61, 341, 472, 1403, 1912, 2321
PpsI	GAGTC	6 cut(s)	61, 341, 472, 1403, 1912, 2321
PpuMI	RGGWCCY	5 cut(s)	41, 1963, 2258, 2366, 2631
PscI	ACATGT	1 cut(s)	2602
PshAI	GACNNNNGTC	1 cut(s)	263
PshBI	ATTAAT	1 cut(s)	882
Psp124BI	GAGCTC	1 cut(s)	1977
Psp5II	RGGWCCY	5 cut(s)	41, 1963, 2258, 2366, 2631
Psp6I	CCWGG	7 cut(s)	60, 189, 643, 1182, 1672, 2758, 2820
PspFI	CCCAGC	1 cut(s)	2635
PspGI	CCWGG	7 cut(s)	60, 189, 643, 1182, 1672, 2758, 2820
PspN4I	GGNNCC	8 cut(s)	43, 2259, 2260, 2523, 2632, 2633, 2702, 2766
PspPI	GGNCC	9 cut(s)	41, 1400, 1451, 1963, 2226, 2243, 2258, 2366, 2631
PspPPI	RGGWCCY	5 cut(s)	41, 1963, 2258, 2366, 2631
PstI	CTGCAG	2 cut(s)	724, 976
PstNI	CAGNNNCTG	2 cut(s)	2009, 2821
PsuI	RGATCY	4 cut(s)	1310, 2005, 2447, 2764
RseI	CAYNNNNRTG	2 cut(s)	1331, 2909
SacI	GAGCTC	1 cut(s)	1977
SalI	GTCGAC	2 cut(s)	364, 1382
SaqAI	TTAA	8 cut(s)	324, 342, 570, 828, 882, 1017, 2397, 2649
SatI	GCNGC	7 cut(s)	123, 437, 720, 900, 1254, 1368, 2220
Sau96I	GGNCC	9 cut(s)	41, 1400, 1451, 1963, 2226, 2243, 2258, 2366, 2631
SchI	GAGTC	6 cut(s)	62, 341, 472, 1403, 1913, 2321
ScrFI	CCNGG	9 cut(s)	62, 191, 645, 1184, 1674, 2628, 2629, 2760, 2822
SduI	GDGCHC	4 cut(s)	432, 1917, 1977, 2359
SexAI	ACCWGGT	1 cut(s)	189
SfcI	CTRYAG	5 cut(s)	225, 720, 972, 1656, 2751
Sfr274I	CTCGAG	1 cut(s)	2358
SinI	GGWCC	8 cut(s)	41, 1400, 1963, 2226, 2243, 2258, 2366, 2631
SlaI	CTCGAG	1 cut(s)	2358
SmaI	CCCGGG	1 cut(s)	2629
SmiMI	CAYNNNNRTG	2 cut(s)	1331, 2909
SmlI	CTYRAG	4 cut(s)	596, 2358, 2695, 2709
SmoI	CTYRAG	4 cut(s)	596, 2358, 2695, 2709
SseBI	AGGCCT	1 cut(s)	1276
SsiI	CCGC	5 cut(s)	122, 230, 1043, 2126, 2805
SspI	AATATT	1 cut(s)	322
SspMI	CTAG	2 cut(s)	2166, 2196
SstI	GAGCTC	1 cut(s)	1977
StuI	AGGCCT	1 cut(s)	1276
StyD4I	CCNGG	9 cut(s)	60, 189, 643, 1182, 1672, 2626, 2627, 2758, 2820
StyI	CCWWGG	1 cut(s)	839
TaiI	ACGT	4 cut(s)	263, 359, 992, 2479
TaqII	GACCGA	1 cut(s)	2231
TatI	WGTACW	4 cut(s)	592, 922, 1077, 1941
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	5 cut(s)	1537, 1949, 2039, 2672, 2812
Tru1I	TTAA	8 cut(s)	324, 342, 570, 828, 882, 1017, 2397, 2649
Tru9I	TTAA	8 cut(s)	324, 342, 570, 828, 882, 1017, 2397, 2649
TscAI	CASTG	8 cut(s)	535, 1333, 1534, 1794, 1800, 1834, 2354, 2584
TseFI	GTSAC	1 cut(s)	1237
TseI	GCWGC	6 cut(s)	436, 719, 899, 1253, 1367, 2219
Tsp45I	GTSAC	1 cut(s)	1237
TspGWI	ACGGA	2 cut(s)	1757, 2705
TspMI	CCCGGG	1 cut(s)	2627
TspRI	CASTG	8 cut(s)	535, 1333, 1534, 1794, 1800, 1834, 2354, 2584
VpaK11BI	GGWCC	8 cut(s)	41, 1400, 1963, 2226, 2243, 2258, 2366, 2631
VspI	ATTAAT	1 cut(s)	882
XapI	RAATTY	2 cut(s)	2831, 2888
XceI	RCATGY	1 cut(s)	2606
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1394
XhoI	CTCGAG	1 cut(s)	2358
XmaI	CCCGGG	1 cut(s)	2627
XmiI	GTMKAC	5 cut(s)	365, 491, 1383, 1524, 1758
XspI	CTAG	2 cut(s)	2166, 2196
Zsp2I	ATGCAT	1 cut(s)	1513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.