Rh6BG243000

Enhancer of polycomb-like protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
45289860 .. 45290735
876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG243000.1

Sequence Viewer

Length: 309 bp
ATGTTGGCCTCTTACGCCTGCGTAAAAGTCAAAGCCCACAGCAGTTATTATAGCGACCACTACGACGAGTCCAACTCCCACCGCCGCTCCCCAACCACCACCACCAATTTTTCAAGTCCCATGTATTGTTTCAGGCATGATAGTGACGAGTGCGTAGTCTTGCGTGAGGTTGATCACACTGACAGCATACCGTTGTATCCACTTGTGAAAGTTCCCAAATTAGGTTGTAGAAGCACAGTGTATAGCAATGGTTTAAGTTCGCGAGATGGTATTCAAAAGAGGAAGAGGTTCACTGAGAAGGAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

102

Amino Acids

11.73

Weight (kDa)

8.71

Isoelectric Point (pI)

69.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014030)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07040
fragaria_vesca FvH4_7g04010
malus_domestica MD00G1152800.v1.1 MD03G1294900.v1.1
prunus_persica Prupe.2G044600_v2.0.a1
pyrus_communis pycom02g23630
rosa_chinensis RchiOBHm_Chr1g0327791
rosa_laevigata RLG00000029964
rosa_multiflora Rmu_sc0005527.1_g000012
rosa_rugosa Rorug01G0071000
rosa_samantha Rh1AG087100 Rh1BG070300 Rh1CG085200 Rh1DG091600 Rh6BG243000 Rh6CG245000
rosa_wichuraiana Rw1G006800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 87
AccII CGCG 1 cut(s) 262
AciI CCGC 2 cut(s) 82, 85
AfiI CCNNNNNNNGG 1 cut(s) 221
AgsI TTSAA 2 cut(s) 114, 275
AoxI GGCC 1 cut(s) 6
Asp700I GAANNNNTTC 1 cut(s) 287
BaeI ACNNNNGTAYC 2 cut(s) 179, 212
BccI CCATC 1 cut(s) 260
BciVI GTATCC 1 cut(s) 207
BclI TGATCA 1 cut(s) 172
BfaI CTAG 1 cut(s) 307
BfuI GTATCC 1 cut(s) 207
BglII AGATCT 1 cut(s) 303
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
BplI GAGNNNNNCTC 2 cut(s) 59, 91
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse3DI GCAATG 1 cut(s) 253
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMI GCAATG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 285
Bsh1236I CGCG 1 cut(s) 262
BshFI GGCC 1 cut(s) 8
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 221
BsmFI GGGAC 1 cut(s) 102
BsnI GGCC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 172, 303
Bsp68I TCGCGA 1 cut(s) 262
BspACI CCGC 2 cut(s) 82, 85
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 286
BspFNI CGCG 1 cut(s) 262
BsrBI CCGCTC 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 253
BssMI GATC 2 cut(s) 172, 303
Bst4CI ACNGT 2 cut(s) 192, 238
Bst6I CTCTTC 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 294
BstFNI CGCG 1 cut(s) 262
BstKTI GATC 2 cut(s) 175, 306
BstMBI GATC 2 cut(s) 172, 303
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstUI CGCG 1 cut(s) 262
BstX2I RGATCY 1 cut(s) 303
BstYI RGATCY 1 cut(s) 303
BsuI GTATCC 1 cut(s) 207
BsuRI GGCC 1 cut(s) 8
BtsIMutI CAGTG 3 cut(s) 177, 243, 291
BtuMI TCGCGA 1 cut(s) 262
Cac8I GCNNGC 1 cut(s) 19
CviAII CATG 2 cut(s) 121, 137
CviJI RGCY 2 cut(s) 8, 35
CviKI_1 RGCY 2 cut(s) 8, 35
DdeI CTNAG 1 cut(s) 294
DpnI GATC 2 cut(s) 174, 305
DpnII GATC 2 cut(s) 172, 303
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
FaeI CATG 2 cut(s) 124, 140
FaiI YATR 5 cut(s) 51, 122, 138, 188, 243
FaqI GGGAC 1 cut(s) 102
FatI CATG 2 cut(s) 120, 136
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 85
Fsp4HI GCNGC 1 cut(s) 85
FspBI CTAG 1 cut(s) 307
GluI GCNGC 1 cut(s) 85
HaeIII GGCC 1 cut(s) 8
Hin1II CATG 2 cut(s) 124, 140
HinfI GANTC 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 291
Hpy188III TCNNGA 1 cut(s) 261
Hpy8I GTNNAC 1 cut(s) 291
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 1 cut(s) 292
HpyCH4III ACNGT 2 cut(s) 192, 238
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 294
Hsp92II CATG 2 cut(s) 124, 140
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 2 cut(s) 172, 303
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 2 cut(s) 31, 118
MaeI CTAG 1 cut(s) 307
MaeIII GTNAC 1 cut(s) 143
MalI GATC 2 cut(s) 174, 305
MbiI CCGCTC 1 cut(s) 87
MboI GATC 2 cut(s) 172, 303
MboII GAAGA 1 cut(s) 295
MflI RGATCY 1 cut(s) 303
MluCI AATT 2 cut(s) 106, 218
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 4 cut(s) 19, 160, 273, 279
MroXI GAANNNNTTC 1 cut(s) 287
MseI TTAA 1 cut(s) 254
MslI CAYNNNNRTG 1 cut(s) 141
MvnI CGCG 1 cut(s) 262
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeII GATC 2 cut(s) 172, 303
NlaIII CATG 2 cut(s) 124, 140
NmuCI GTSAC 1 cut(s) 143
NruI TCGCGA 1 cut(s) 262
PdmI GAANNNNTTC 1 cut(s) 287
PkrI GCNGC 1 cut(s) 86
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PsuI RGATCY 1 cut(s) 303
RruI TCGCGA 1 cut(s) 262
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 2 cut(s) 172, 303
SchI GAGTC 1 cut(s) 77
SetI ASST 3 cut(s) 171, 226, 290
SmiMI CAYNNNNRTG 1 cut(s) 141
Sse9I AATT 2 cut(s) 106, 218
SsiI CCGC 2 cut(s) 82, 85
SspMI CTAG 1 cut(s) 307
TaaI ACNGT 2 cut(s) 192, 238
TasI AATT 2 cut(s) 106, 218
TauI GCSGC 1 cut(s) 87
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TscAI CASTG 3 cut(s) 184, 243, 298
TseFI GTSAC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 143
TspRI CASTG 3 cut(s) 184, 243, 298
XmnI GAANNNNTTC 1 cut(s) 287
XspI CTAG 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.