Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005527.1

Orthogroup ID

OG0014030

Physical Location & Seq

Genomic Coordinates Reverse (-)

34298 .. 36770

Gene Structure 2473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005527.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

atgttcacggctgaccctcccatctctgccaccggcgtcggcgtcggctacggcatcgccatcgccgtcagcatcctcgtactcatctccgccatcatgctcgcctcttacgcctgcgtcaaagtcaaagcccacggcggtttttacaacgacgactacgacgagtccaactcccaccgccgctcccccaccaccacaggcatctattcagccgagccaatgacggtcgtgctgggcctcgatgggcctaccatagactcttacccgaagatagttctcggggaaagccggcggctacctaagccgaacgacggcgtttgttccatctgcttgtcggagtaccaggccaaggatcccgtacggtgcatcccggattgccatcactgtttccacgttgattgcgtagacgaatggcttcgcatgagtgccacgtgtcccgtctgtagaaactctccggctccgtcgccgggcccgagtcctctgtccgatttgggacttgggtcctccccgacaggtcaagctttgaagaagctctgcaggaagcaaaatcctgagatcctgtttcttatggagacacgtcaaccagaggataccatcaagaactggagaagacatctgaagttttcagattaccattcagttgacccgattcatactggaggcgggttggctctgttttggtgttttggagtgattctatacaggtcacagtccttgatgaaaagaggatattttgctagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

247

Amino Acids

27.11

Weight (kDa)

7.99

Isoelectric Point (pI)

53.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07040
fragaria_vesca	FvH4_7g04010
malus_domestica	MD00G1152800.v1.1 MD03G1294900.v1.1
prunus_persica	Prupe.2G044600_v2.0.a1
pyrus_communis	pycom02g23630
rosa_chinensis	RchiOBHm_Chr1g0327791
rosa_laevigata	RLG00000029964
rosa_multiflora	Rmu_sc0005527.1_g000012
rosa_rugosa	Rorug01G0071000
rosa_samantha	Rh1AG087100 Rh1BG070300 Rh1CG085200 Rh1DG091600 Rh6BG243000 Rh6CG245000
rosa_wichuraiana	Rw1G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	183
AccI	GTMKAC	1 cut(s)	405
AciI	CCGC	6 cut(s)	90, 138, 178, 181, 292, 663
AclWI	GGATC	3 cut(s)	347, 360, 550
AcuI	CTGAAG	1 cut(s)	638
AcvI	CACGTG	1 cut(s)	432
AcyI	GRCGYC	2 cut(s)	36, 42
AfaI	GTAC	3 cut(s)	81, 341, 360
AfiI	CCNNNNNNNGG	3 cut(s)	311, 349, 467
AflIII	ACRYGT	2 cut(s)	431, 575
AgsI	TTSAA	1 cut(s)	526
AjiI	CACGTC	1 cut(s)	578
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	2 cut(s)	521, 532
AluI	AGCT	2 cut(s)	521, 532
Alw26I	GTCTC	1 cut(s)	566
AlwI	GGATC	3 cut(s)	347, 360, 550
Ama87I	CYCGRG	2 cut(s)	278, 472
AoxI	GGCC	4 cut(s)	235, 245, 345, 469
ApaI	GGGCCC	1 cut(s)	473
Asp700I	GAANNNNTTC	1 cut(s)	414
AspS9I	GGNCC	5 cut(s)	235, 245, 469, 470, 501
AsuC2I	CCSGG	2 cut(s)	371, 468
AvaI	CYCGRG	2 cut(s)	278, 472
AvaII	GGWCC	1 cut(s)	501
BaeGI	GKGCMC	1 cut(s)	473
BamHI	GGATCC	1 cut(s)	352
BanII	GRGCYC	1 cut(s)	473
BbrPI	CACGTG	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	616
BccI	CCATC	7 cut(s)	29, 68, 101, 236, 332, 387, 602
BceAI	ACGGC	5 cut(s)	24, 50, 67, 151, 328
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	1 cut(s)	344
BciVI	GTATCC	1 cut(s)	583
BcnI	CCSGG	2 cut(s)	371, 468
BcoDI	GTCTC	1 cut(s)	566
BfaI	CTAG	1 cut(s)	738
BfmI	CTRYAG	2 cut(s)	442, 535
BfuI	GTATCC	1 cut(s)	583
BisI	GCNGC	2 cut(s)	181, 293
BlsI	GCNGC	2 cut(s)	182, 294
Bme1390I	CCNGG	3 cut(s)	344, 371, 468
Bme18I	GGWCC	1 cut(s)	501
BmeT110I	CYCGRG	2 cut(s)	278, 472
BmgBI	CACGTC	1 cut(s)	578
BmgT120I	GGNCC	5 cut(s)	235, 245, 469, 470, 501
BmiI	GGNNCC	4 cut(s)	354, 459, 471, 502
BmrFI	CCNGG	3 cut(s)	344, 371, 468
BmsI	GCATC	4 cut(s)	63, 81, 210, 375
BoxI	GACNNNNGTC	1 cut(s)	499
BpiI	GAAGAC	1 cut(s)	616
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
BpmI	CTGGAG	2 cut(s)	625, 678
Bpu10I	CCTNAGC	1 cut(s)	300
BpuMI	CCSGG	2 cut(s)	371, 468
BsaAI	YACGTR	1 cut(s)	432
BsaBI	GATNNNNATC	1 cut(s)	378
BsaHI	GRCGYC	2 cut(s)	36, 42
BsaJI	CCNNGG	2 cut(s)	133, 348
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	3 cut(s)	311, 349, 467
Bse118I	RCCGGY	2 cut(s)	32, 288
Bse1I	ACTGG	2 cut(s)	608, 661
Bse8I	GATNNNNATC	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	2 cut(s)	133, 348
BseGI	GGATG	2 cut(s)	72, 366
BseJI	GATNNNNATC	1 cut(s)	378
BseLI	CCNNNNNNNGG	3 cut(s)	311, 349, 467
BseMII	CTCAG	1 cut(s)	543
BseNI	ACTGG	2 cut(s)	608, 661
BseSI	GKGCMC	1 cut(s)	473
BseYI	CCCAGC	1 cut(s)	232
Bsh1285I	CGRYCG	1 cut(s)	228
BshFI	GGCC	4 cut(s)	237, 247, 347, 471
BsiEI	CGRYCG	1 cut(s)	228
BsiHKCI	CYCGRG	2 cut(s)	278, 472
BsiSI	CCGG	5 cut(s)	33, 289, 371, 455, 467
BsiWI	CGTACG	1 cut(s)	358
BslFI	GGGAC	2 cut(s)	420, 507
BslI	CCNNNNNNNGG	3 cut(s)	311, 349, 467
BsmAI	GTCTC	1 cut(s)	566
BsmFI	GGGAC	2 cut(s)	420, 507
BsnI	GGCC	4 cut(s)	237, 247, 347, 471
BsoBI	CYCGRG	2 cut(s)	278, 472
Bsp120I	GGGCCC	1 cut(s)	469
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	2 cut(s)	352, 555
BspACI	CCGC	6 cut(s)	90, 138, 178, 181, 292, 663
BspANI	GGCC	4 cut(s)	237, 247, 347, 471
BspCNI	CTCAG	1 cut(s)	544
BspLI	GGNNCC	4 cut(s)	354, 459, 471, 502
BspMAI	CTGCAG	1 cut(s)	539
BspPI	GGATC	3 cut(s)	347, 360, 550
BsrBI	CCGCTC	1 cut(s)	183
BsrFI	RCCGGY	2 cut(s)	32, 288
BsrI	ACTGG	2 cut(s)	608, 661
BssAI	RCCGGY	2 cut(s)	32, 288
BssECI	CCNNGG	2 cut(s)	133, 348
BssMI	GATC	2 cut(s)	352, 555
BssNI	GRCGYC	2 cut(s)	36, 42
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	4 cut(s)	226, 363, 386, 711
BstACI	GRCGYC	2 cut(s)	36, 42
BstBAI	YACGTR	1 cut(s)	432
BstC8I	GCNNGC	3 cut(s)	102, 115, 290
BstDEI	CTNAG	2 cut(s)	300, 552
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	72, 366
BstKTI	GATC	2 cut(s)	355, 558
BstMAI	GTCTC	1 cut(s)	566
BstMBI	GATC	2 cut(s)	352, 555
BstMCI	CGRYCG	1 cut(s)	228
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 301
BstNI	CCWGG	1 cut(s)	344
BstPAI	GACNNNNGTC	1 cut(s)	499
BstSCI	CCNGG	3 cut(s)	342, 369, 466
BstSFI	CTRYAG	2 cut(s)	442, 535
BstSLI	GKGCMC	1 cut(s)	473
BstV2I	GAAGAC	1 cut(s)	616
BstX2I	RGATCY	2 cut(s)	352, 555
BstYI	RGATCY	2 cut(s)	352, 555
BsuI	GTATCC	1 cut(s)	583
BsuRI	GGCC	4 cut(s)	237, 247, 347, 471
BtgI	CCRYGG	1 cut(s)	133
BtgZI	GCGATG	2 cut(s)	40, 46
BtrI	CACGTC	1 cut(s)	578
BtsCI	GGATG	2 cut(s)	72, 366
BtsIMutI	CAGTG	1 cut(s)	382
Cac8I	GCNNGC	3 cut(s)	102, 115, 290
Cfr10I	RCCGGY	2 cut(s)	32, 288
Cfr13I	GGNCC	5 cut(s)	235, 245, 469, 470, 501
CseI	GACGC	3 cut(s)	25, 31, 106
Csp6I	GTAC	3 cut(s)	80, 340, 359
CspCI	CAANNNNNGTGG	2 cut(s)	380, 415
CviAII	CATG	2 cut(s)	97, 421
CviQI	GTAC	3 cut(s)	80, 340, 359
DdeI	CTNAG	2 cut(s)	300, 552
DpnI	GATC	2 cut(s)	354, 557
DpnII	GATC	2 cut(s)	352, 555
EciI	GGCGGA	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	473
Eco47I	GGWCC	1 cut(s)	501
Eco57I	CTGAAG	1 cut(s)	638
Eco72I	CACGTG	1 cut(s)	432
Eco88I	CYCGRG	2 cut(s)	278, 472
EcoO109I	RGGNCCY	1 cut(s)	501
EcoRII	CCWGG	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	2 cut(s)	100, 424
FaiI	YATR	6 cut(s)	98, 254, 422, 569, 654, 700
FaqI	GGGAC	2 cut(s)	420, 507
FatI	CATG	2 cut(s)	96, 420
FauI	CCCGC	1 cut(s)	656
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	2 cut(s)	181, 293
FokI	GGATG	2 cut(s)	59, 353
FriOI	GRGCYC	1 cut(s)	473
Fsp4HI	GCNGC	2 cut(s)	181, 293
FspBI	CTAG	1 cut(s)	738
GluI	GCNGC	2 cut(s)	181, 293
GsaI	CCCAGC	1 cut(s)	236
GsuI	CTGGAG	2 cut(s)	625, 678
HaeIII	GGCC	4 cut(s)	237, 247, 347, 471
HapII	CCGG	5 cut(s)	33, 289, 371, 455, 467
HgaI	GACGC	3 cut(s)	25, 31, 106
Hin1I	GRCGYC	2 cut(s)	36, 42
Hin1II	CATG	2 cut(s)	100, 424
HincII	GTYRAC	2 cut(s)	581, 643
HindII	GTYRAC	2 cut(s)	581, 643
HindIII	AAGCTT	1 cut(s)	519
HinfI	GANTC	5 cut(s)	164, 257, 475, 649, 694
HpaII	CCGG	5 cut(s)	33, 289, 371, 455, 467
Hpy166II	GTNNAC	4 cut(s)	6, 406, 581, 643
Hpy188I	TCNGA	4 cut(s)	337, 487, 618, 628
Hpy188III	TCNNGA	2 cut(s)	551, 598
Hpy8I	GTNNAC	4 cut(s)	6, 406, 581, 643
Hpy99I	CGWCG	6 cut(s)	41, 47, 155, 164, 314, 466
HpyCH4III	ACNGT	4 cut(s)	226, 363, 386, 711
HpyCH4IV	ACGT	3 cut(s)	393, 431, 577
HpyCH4V	TGCA	2 cut(s)	366, 537
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 301
HpyF3I	CTNAG	2 cut(s)	300, 552
HpySE526I	ACGT	3 cut(s)	393, 431, 577
Hsp92I	GRCGYC	2 cut(s)	36, 42
Hsp92II	CATG	2 cut(s)	100, 424
KroI	GCCGGC	1 cut(s)	288
KroNI	GCCGGC	1 cut(s)	290
Kzo9I	GATC	2 cut(s)	352, 555
LmnI	GCTCC	2 cut(s)	188, 463
LweI	GCATC	4 cut(s)	63, 81, 210, 375
MaeI	CTAG	1 cut(s)	738
MaeII	ACGT	3 cut(s)	393, 431, 577
MaeIII	GTNAC	1 cut(s)	705
MalI	GATC	2 cut(s)	354, 557
MbiI	CCGCTC	1 cut(s)	183
MboI	GATC	2 cut(s)	352, 555
MboII	GAAGA	3 cut(s)	280, 538, 621
MflI	RGATCY	2 cut(s)	352, 555
MhlI	GDGCHC	1 cut(s)	473
MlyI	GAGTC	3 cut(s)	173, 251, 484
MmeI	TCCRAC	2 cut(s)	192, 315
MnlI	CCTC	9 cut(s)	27, 86, 115, 248, 489, 514, 580, 653, 719
MroNI	GCCGGC	1 cut(s)	288
MroXI	GAANNNNTTC	1 cut(s)	414
MspI	CCGG	5 cut(s)	33, 289, 371, 455, 467
MspR9I	CCNGG	3 cut(s)	344, 371, 468
MvaI	CCWGG	1 cut(s)	344
MwoI	GCNNNNNNNGC	2 cut(s)	110, 301
NaeI	GCCGGC	1 cut(s)	290
NciI	CCSGG	2 cut(s)	371, 468
NdeII	GATC	2 cut(s)	352, 555
NgoMIV	GCCGGC	1 cut(s)	288
NlaIII	CATG	2 cut(s)	100, 424
NlaIV	GGNNCC	4 cut(s)	354, 459, 471, 502
NmeAIII	GCCGAG	1 cut(s)	238
NmuCI	GTSAC	1 cut(s)	705
PcsI	WCGNNNNNNNCGW	5 cut(s)	63, 156, 159, 399, 470
PdiI	GCCGGC	1 cut(s)	290
PdmI	GAANNNNTTC	1 cut(s)	414
PfeI	GAWTC	2 cut(s)	649, 694
Pfl23II	CGTACG	1 cut(s)	358
PfoI	TCCNGGA	1 cut(s)	369
PkrI	GCNGC	2 cut(s)	182, 294
PleI	GAGTC	3 cut(s)	172, 251, 483
PmaCI	CACGTG	1 cut(s)	432
PmlI	CACGTG	1 cut(s)	432
PpsI	GAGTC	3 cut(s)	172, 251, 483
Ppu21I	YACGTR	1 cut(s)	432
PpuMI	RGGWCCY	1 cut(s)	501
PshAI	GACNNNNGTC	1 cut(s)	499
Psp5II	RGGWCCY	1 cut(s)	501
Psp6I	CCWGG	1 cut(s)	342
PspCI	CACGTG	1 cut(s)	432
PspFI	CCCAGC	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	342
PspLI	CGTACG	1 cut(s)	358
PspN4I	GGNNCC	4 cut(s)	354, 459, 471, 502
PspOMI	GGGCCC	1 cut(s)	469
PspPI	GGNCC	5 cut(s)	235, 245, 469, 470, 501
PspPPI	RGGWCCY	1 cut(s)	501
PstI	CTGCAG	1 cut(s)	539
PsuI	RGATCY	2 cut(s)	352, 555
RsaI	GTAC	3 cut(s)	81, 341, 360
RsaNI	GTAC	3 cut(s)	80, 340, 359
SatI	GCNGC	2 cut(s)	181, 293
Sau3AI	GATC	2 cut(s)	352, 555
Sau96I	GGNCC	5 cut(s)	235, 245, 469, 470, 501
SchI	GAGTC	3 cut(s)	173, 251, 484
ScrFI	CCNGG	3 cut(s)	344, 371, 468
SduI	GDGCHC	1 cut(s)	473
SetI	ASST	8 cut(s)	301, 396, 434, 517, 523, 534, 580, 707
SfaNI	GCATC	4 cut(s)	63, 81, 210, 375
SfcI	CTRYAG	2 cut(s)	442, 535
SgrAI	CRCCGGYG	1 cut(s)	32
SinI	GGWCC	1 cut(s)	501
SsiI	CCGC	6 cut(s)	90, 138, 178, 181, 292, 663
SspMI	CTAG	1 cut(s)	738
StyD4I	CCNGG	3 cut(s)	342, 369, 466
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	4 cut(s)	226, 363, 386, 711
TaiI	ACGT	3 cut(s)	396, 434, 580
TaqI	TCGA	1 cut(s)	240
TauI	GCSGC	2 cut(s)	183, 295
TfiI	GAWTC	2 cut(s)	649, 694
TscAI	CASTG	1 cut(s)	389
TseFI	GTSAC	1 cut(s)	705
Tsp45I	GTSAC	1 cut(s)	705
TspDTI	ATGAA	2 cut(s)	641, 734
TspGWI	ACGGA	1 cut(s)	450
TspRI	CASTG	1 cut(s)	389
VpaK11BI	GGWCC	1 cut(s)	501
XmiI	GTMKAC	1 cut(s)	405
XmnI	GAANNNNTTC	1 cut(s)	414
XspI	CTAG	1 cut(s)	738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.