Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0014030

Physical Location & Seq

Genomic Coordinates Reverse (-)

41224867 .. 41225687

Gene Structure 821 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG245000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTTGGCCTCTTACGCCTGCGTAAAAGTCAAAGCCCACAGCAGTTATTATAGCGACCACTACGACGAGTCCAACTCCCACCGCCGCTCCCCAACCACCACCAGCAACTATTCCGCTGAGCCCACGATGTTTTTCAAGTCCCATGTATTGTTTCAGTGTAGGCATGATAGTGACGAGTGCGTAGTCTTGCATGAGGTTGATCACACTGACAGCATACCGTTGTATCCACTTGTGAAAGTTCCCAAATTAGGTTGTAGAAGCACAGTGTATAGCAATGGTTTAAGTTCGCGAGGTGGTATTCAAAAGAGGAAGAGGTTCACTGAGAAGGAGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPL1

Protein Analysis

111

Amino Acids

12.69

Weight (kDa)

8.69

Isoelectric Point (pI)

58.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07040
fragaria_vesca	FvH4_7g04010
malus_domestica	MD00G1152800.v1.1 MD03G1294900.v1.1
prunus_persica	Prupe.2G044600_v2.0.a1
pyrus_communis	pycom02g23630
rosa_chinensis	RchiOBHm_Chr1g0327791
rosa_laevigata	RLG00000029964
rosa_multiflora	Rmu_sc0005527.1_g000012
rosa_rugosa	Rorug01G0071000
rosa_samantha	Rh1AG087100 Rh1BG070300 Rh1CG085200 Rh1DG091600 Rh6BG243000 Rh6CG245000
rosa_wichuraiana	Rw1G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	87
AccII	CGCG	1 cut(s)	289
AciI	CCGC	3 cut(s)	82, 85, 114
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgsI	TTSAA	2 cut(s)	136, 302
AoxI	GGCC	1 cut(s)	6
Asp700I	GAANNNNTTC	1 cut(s)	314
BaeI	ACNNNNGTAYC	2 cut(s)	206, 239
BanII	GRGCYC	1 cut(s)	123
BciVI	GTATCC	1 cut(s)	234
BclI	TGATCA	1 cut(s)	199
BfaI	CTAG	1 cut(s)	334
BfuI	GTATCC	1 cut(s)	234
BglII	AGATCT	1 cut(s)	330
BisI	GCNGC	1 cut(s)	85
BlpI	GCTNAGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	86
BplI	GAGNNNNNCTC	2 cut(s)	59, 91
Bpu1102I	GCTNAGC	1 cut(s)	117
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse3DI	GCAATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMI	GCAATG	1 cut(s)	280
BseMII	CTCAG	2 cut(s)	108, 312
Bsh1236I	CGCG	1 cut(s)	289
BshFI	GGCC	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	199, 330
Bsp1720I	GCTNAGC	1 cut(s)	117
Bsp68I	TCGCGA	1 cut(s)	289
BspACI	CCGC	3 cut(s)	82, 85, 114
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	2 cut(s)	109, 313
BspFNI	CGCG	1 cut(s)	289
BsrBI	CCGCTC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	280
BssMI	GATC	2 cut(s)	199, 330
Bst4CI	ACNGT	2 cut(s)	219, 265
Bst6I	CTCTTC	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	2 cut(s)	117, 321
BstFNI	CGCG	1 cut(s)	289
BstKTI	GATC	2 cut(s)	202, 333
BstMBI	GATC	2 cut(s)	199, 330
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstUI	CGCG	1 cut(s)	289
BstX2I	RGATCY	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	330
BsuI	GTATCC	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	8
BtsIMutI	CAGTG	4 cut(s)	161, 204, 270, 318
BtuMI	TCGCGA	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	19
CviAII	CATG	3 cut(s)	143, 164, 191
CviJI	RGCY	3 cut(s)	8, 35, 121
CviKI_1	RGCY	3 cut(s)	8, 35, 121
DdeI	CTNAG	2 cut(s)	117, 321
DpnI	GATC	2 cut(s)	201, 332
DpnII	GATC	2 cut(s)	199, 330
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
Eco24I	GRGCYC	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	123
FaeI	CATG	3 cut(s)	146, 167, 194
FaiI	YATR	6 cut(s)	51, 144, 165, 192, 215, 270
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	3 cut(s)	142, 163, 190
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	1 cut(s)	85
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	85
FspBI	CTAG	1 cut(s)	334
GluI	GCNGC	1 cut(s)	85
HaeIII	GGCC	1 cut(s)	8
Hin1II	CATG	3 cut(s)	146, 167, 194
HinfI	GANTC	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188III	TCNNGA	1 cut(s)	288
Hpy8I	GTNNAC	1 cut(s)	318
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	1 cut(s)	319
HpyCH4III	ACNGT	2 cut(s)	219, 265
HpyCH4V	TGCA	1 cut(s)	190
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	2 cut(s)	117, 321
Hsp92II	CATG	3 cut(s)	146, 167, 194
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	199, 330
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	2 cut(s)	31, 115
MaeI	CTAG	1 cut(s)	334
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	2 cut(s)	201, 332
MbiI	CCGCTC	1 cut(s)	87
MboI	GATC	2 cut(s)	199, 330
MboII	GAAGA	1 cut(s)	322
MflI	RGATCY	1 cut(s)	330
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	1 cut(s)	245
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	5 cut(s)	19, 187, 284, 300, 306
MroXI	GAANNNNTTC	1 cut(s)	314
MseI	TTAA	1 cut(s)	281
MslI	CAYNNNNRTG	1 cut(s)	168
MspA1I	CMGCKG	1 cut(s)	116
MvnI	CGCG	1 cut(s)	289
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	2 cut(s)	199, 330
NlaIII	CATG	3 cut(s)	146, 167, 194
NmuCI	GTSAC	1 cut(s)	170
NruI	TCGCGA	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	314
PkrI	GCNGC	1 cut(s)	86
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	330
RruI	TCGCGA	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	2 cut(s)	199, 330
SchI	GAGTC	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	4 cut(s)	198, 253, 295, 317
SmiMI	CAYNNNNRTG	1 cut(s)	168
Sse9I	AATT	1 cut(s)	245
SsiI	CCGC	3 cut(s)	82, 85, 114
SspMI	CTAG	1 cut(s)	334
TaaI	ACNGT	2 cut(s)	219, 265
TasI	AATT	1 cut(s)	245
TauI	GCSGC	1 cut(s)	87
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TscAI	CASTG	4 cut(s)	161, 211, 270, 325
TseFI	GTSAC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	170
TspRI	CASTG	4 cut(s)	161, 211, 270, 325
XmnI	GAANNNNTTC	1 cut(s)	314
XspI	CTAG	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.