pycom02g23630

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0014030
Physical Location & Seq
Reverse (-)
21791338 .. 21795419
4082 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g23630.2

Sequence Viewer

Length: 525 bp
ATGTTCACGGCGGAGTCACCTGCATCAGCCCCTGGTGTCGGCGTCGGCTATGGCATAGCCATTGCCGTCAGCATCCTCGTCCTCATCTCCGCCATCATGCTCGCTTCTTACGCCTGCGTTAAAGTCAAAGGCTCAACCGGCCGAGGCCACACAGGCGATGCCACTTCTAACTACTACGAAGACGGCAACCGCCGCTTCTCCACCACAAGCAACTCAACGGTGCCTGTGGTGGTCCTCACGGGCCTCGACGACCCCACCATTGACTCGTACCCAAAGTTGGTACTCGGCGAAAGCCGGCGGCTCCCTCAGCGCAACGACGCGGTGTGCTCCATTTGCTTGTCCGAGTACAAGCCCAAGGATCAAGTACGGTGCATTCCGGACTGCCACCATTGTTTCCATGCAGAATGCGTCGATGAGTGGCTTCGCATGAGCGCCACGTGTCCGGTTTGTAGAAATTCTCCTGCTCCGTCGGCCGGTCCAAGCCCTCTGTCCGATTTGGTGCCACTGGCTTTCAATGCCAGTTAA

Protein Analysis

175

Amino Acids

18.45

Weight (kDa)

6.04

Isoelectric Point (pI)

50.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014030)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07040
fragaria_vesca FvH4_7g04010
malus_domestica MD00G1152800.v1.1 MD03G1294900.v1.1
prunus_persica Prupe.2G044600_v2.0.a1
pyrus_communis pycom02g23630
rosa_chinensis RchiOBHm_Chr1g0327791
rosa_laevigata RLG00000029964
rosa_multiflora Rmu_sc0005527.1_g000012
rosa_rugosa Rorug01G0071000
rosa_samantha Rh1AG087100 Rh1BG070300 Rh1CG085200 Rh1DG091600 Rh6BG243000 Rh6CG245000
rosa_wichuraiana Rw1G006800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 28
Acc36I ACCTGC 1 cut(s) 28
AccB1I GGYRCC 2 cut(s) 220, 499
AccII CGCG 1 cut(s) 320
AccIII TCCGGA 1 cut(s) 376
AciI CCGC 6 cut(s) 11, 90, 190, 193, 298, 320
AclWI GGATC 1 cut(s) 366
AcoI YGGCCR 2 cut(s) 139, 471
AcsI RAATTY 1 cut(s) 454
AcvI CACGTG 1 cut(s) 438
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 4 cut(s) 269, 282, 347, 366
AfiI CCNNNNNNNGG 3 cut(s) 38, 277, 473
AflIII ACRYGT 1 cut(s) 437
AgsI TTSAA 1 cut(s) 514
AjnI CCWGG 1 cut(s) 31
Alw21I GWGCWC 1 cut(s) 329
AlwI GGATC 1 cut(s) 366
AlwNI CAGNNNCTG 1 cut(s) 32
Aor13HI TCCGGA 1 cut(s) 376
AoxI GGCC 4 cut(s) 139, 145, 241, 471
ApoI RAATTY 1 cut(s) 454
AspLEI GCGC 2 cut(s) 312, 434
AspS9I GGNCC 3 cut(s) 232, 241, 476
AsuHPI GGTGA 1 cut(s) 9
AvaII GGWCC 2 cut(s) 232, 476
BanI GGYRCC 2 cut(s) 220, 499
BbrPI CACGTG 1 cut(s) 438
BbsI GAAGAC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 329
BbvCI CCTCAGC 1 cut(s) 306
BccI CCATC 1 cut(s) 101
BceAI ACGGC 3 cut(s) 24, 50, 199
BciT130I CCWGG 1 cut(s) 33
BfoI RGCGCY 1 cut(s) 435
BfuAI ACCTGC 1 cut(s) 28
BglI GCCNNNNNGGC 1 cut(s) 153
BisI GCNGC 2 cut(s) 193, 299
BlsI GCNGC 2 cut(s) 194, 300
Bme1390I CCNGG 1 cut(s) 33
Bme18I GGWCC 2 cut(s) 232, 476
BmgT120I GGNCC 3 cut(s) 232, 241, 476
BmiI GGNNCC 3 cut(s) 222, 302, 501
BmrFI CCNGG 1 cut(s) 33
BmsI GCATC 3 cut(s) 32, 81, 148
BpiI GAAGAC 1 cut(s) 186
Bpu10I CCTNAGC 1 cut(s) 306
BsaAI YACGTR 1 cut(s) 438
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 3 cut(s) 31, 142, 354
BsaWI WCCGGW 2 cut(s) 376, 442
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 277, 473
Bse118I RCCGGY 3 cut(s) 137, 294, 473
Bse1I ACTGG 2 cut(s) 510, 519
Bse3DI GCAATG 1 cut(s) 60
BseAI TCCGGA 1 cut(s) 376
BseBI CCWGG 1 cut(s) 33
BseDI CCNNGG 3 cut(s) 31, 142, 354
BseGI GGATG 1 cut(s) 72
BseLI CCNNNNNNNGG 3 cut(s) 38, 277, 473
BseMI GCAATG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 2 cut(s) 510, 519
BseX3I CGGCCG 2 cut(s) 139, 471
Bsh1236I CGCG 1 cut(s) 320
Bsh1285I CGRYCG 2 cut(s) 142, 474
BshFI GGCC 4 cut(s) 141, 147, 243, 473
BshNI GGYRCC 2 cut(s) 220, 499
BsiEI CGRYCG 2 cut(s) 142, 474
BsiHKAI GWGCWC 1 cut(s) 329
BsiSI CCGG 5 cut(s) 138, 295, 377, 443, 474
BslI CCNNNNNNNGG 3 cut(s) 38, 277, 473
BsmI GAATGC 2 cut(s) 372, 410
BsnI GGCC 4 cut(s) 141, 147, 243, 473
Bsp1286I GDGCHC 1 cut(s) 329
Bsp13I TCCGGA 1 cut(s) 376
Bsp143I GATC 1 cut(s) 358
BspACI CCGC 6 cut(s) 11, 90, 190, 193, 298, 320
BspANI GGCC 4 cut(s) 141, 147, 243, 473
BspCNI CTCAG 1 cut(s) 319
BspEI TCCGGA 1 cut(s) 376
BspFNI CGCG 1 cut(s) 320
BspLI GGNNCC 3 cut(s) 222, 302, 501
BspMI ACCTGC 1 cut(s) 28
BspPI GGATC 1 cut(s) 366
BspT107I GGYRCC 2 cut(s) 220, 499
BsrDI GCAATG 1 cut(s) 60
BsrFI RCCGGY 3 cut(s) 137, 294, 473
BsrI ACTGG 2 cut(s) 510, 519
BssAI RCCGGY 3 cut(s) 137, 294, 473
BssECI CCNNGG 3 cut(s) 31, 142, 354
BssMI GATC 1 cut(s) 358
BssNI GRCGYC 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 33
Bst4CI ACNGT 2 cut(s) 220, 369
BstACI GRCGYC 1 cut(s) 42
BstBAI YACGTR 1 cut(s) 438
BstC8I GCNNGC 3 cut(s) 102, 115, 296
BstDEI CTNAG 1 cut(s) 306
BstF5I GGATG 1 cut(s) 72
BstFNI CGCG 1 cut(s) 320
BstH2I RGCGCY 1 cut(s) 435
BstHHI GCGC 2 cut(s) 312, 434
BstKTI GATC 1 cut(s) 361
BstMBI GATC 1 cut(s) 358
BstMCI CGRYCG 2 cut(s) 142, 474
BstMWI GCNNNNNNNGC 8 cut(s) 110, 138, 153, 192, 307, 333, 470, 515
BstNI CCWGG 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 31
BstUI CGCG 1 cut(s) 320
BstV2I GAAGAC 1 cut(s) 186
BstZI CGGCCG 2 cut(s) 139, 471
BsuRI GGCC 4 cut(s) 141, 147, 243, 473
BtgZI GCGATG 1 cut(s) 171
BtsCI GGATG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 503
BveI ACCTGC 1 cut(s) 28
Cac8I GCNNGC 3 cut(s) 102, 115, 296
CaiI CAGNNNCTG 1 cut(s) 32
CfoI GCGC 2 cut(s) 312, 434
Cfr10I RCCGGY 3 cut(s) 137, 294, 473
Cfr13I GGNCC 3 cut(s) 232, 241, 476
CseI GACGC 3 cut(s) 31, 326, 397
Csp6I GTAC 4 cut(s) 268, 281, 346, 365
CviAII CATG 3 cut(s) 97, 398, 427
CviQI GTAC 4 cut(s) 268, 281, 346, 365
DdeI CTNAG 1 cut(s) 306
DpnI GATC 1 cut(s) 360
DpnII GATC 1 cut(s) 358
EaeI YGGCCR 2 cut(s) 139, 471
EagI CGGCCG 2 cut(s) 139, 471
EciI GGCGGA 2 cut(s) 26, 79
EclXI CGGCCG 2 cut(s) 139, 471
Eco130I CCWWGG 1 cut(s) 354
Eco47I GGWCC 2 cut(s) 232, 476
Eco52I CGGCCG 2 cut(s) 139, 471
Eco72I CACGTG 1 cut(s) 438
EcoRII CCWGG 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 3 cut(s) 100, 401, 430
FaiI YATR 5 cut(s) 51, 56, 98, 399, 428
FatI CATG 3 cut(s) 96, 397, 426
Fnu4HI GCNGC 2 cut(s) 193, 299
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 2 cut(s) 193, 299
GlaI GCGC 2 cut(s) 311, 433
GluI GCNGC 2 cut(s) 193, 299
HaeII RGCGCY 1 cut(s) 435
HaeIII GGCC 4 cut(s) 141, 147, 243, 473
HapII CCGG 5 cut(s) 138, 295, 377, 443, 474
HgaI GACGC 3 cut(s) 31, 326, 397
HhaI GCGC 2 cut(s) 312, 434
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 3 cut(s) 100, 401, 430
Hin6I GCGC 2 cut(s) 310, 432
HinP1I GCGC 2 cut(s) 310, 432
HinfI GANTC 2 cut(s) 14, 263
HpaII CCGG 5 cut(s) 138, 295, 377, 443, 474
HphI GGTGA 1 cut(s) 9
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 343, 493
Hpy188III TCNNGA 1 cut(s) 377
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 5 cut(s) 47, 251, 320, 413, 472
HpyCH4III ACNGT 2 cut(s) 220, 369
HpyCH4IV ACGT 1 cut(s) 437
HpyCH4V TGCA 3 cut(s) 23, 372, 401
HpyF10VI GCNNNNNNNGC 8 cut(s) 110, 138, 153, 192, 307, 333, 470, 515
HpyF3I CTNAG 1 cut(s) 306
HpySE526I ACGT 1 cut(s) 437
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 3 cut(s) 100, 401, 430
HspAI GCGC 2 cut(s) 310, 432
Kpn2I TCCGGA 1 cut(s) 376
KroI GCCGGC 1 cut(s) 294
KroNI GCCGGC 1 cut(s) 296
Kzo9I GATC 1 cut(s) 358
LmnI GCTCC 3 cut(s) 306, 332, 469
LweI GCATC 3 cut(s) 32, 81, 148
MaeII ACGT 1 cut(s) 437
MaeIII GTNAC 1 cut(s) 15
MalI GATC 1 cut(s) 360
MboI GATC 1 cut(s) 358
MboII GAAGA 1 cut(s) 191
MhlI GDGCHC 1 cut(s) 329
MluCI AATT 1 cut(s) 454
MlyI GAGTC 2 cut(s) 23, 257
MnlI CCTC 7 cut(s) 86, 92, 137, 245, 254, 315, 495
MroI TCCGGA 1 cut(s) 376
MroNI GCCGGC 1 cut(s) 294
MseI TTAA 2 cut(s) 120, 523
MspI CCGG 5 cut(s) 138, 295, 377, 443, 474
MspR9I CCNGG 1 cut(s) 33
Mva1269I GAATGC 2 cut(s) 372, 410
MvaI CCWGG 1 cut(s) 33
MvnI CGCG 1 cut(s) 320
MwoI GCNNNNNNNGC 8 cut(s) 110, 138, 153, 192, 307, 333, 470, 515
NaeI GCCGGC 1 cut(s) 296
NdeII GATC 1 cut(s) 358
NgoMIV GCCGGC 1 cut(s) 294
NlaIII CATG 3 cut(s) 100, 401, 430
NlaIV GGNNCC 3 cut(s) 222, 302, 501
NmeAIII GCCGAG 2 cut(s) 167, 264
NmuCI GTSAC 1 cut(s) 15
PaqCI CACCTGC 1 cut(s) 28
PctI GAATGC 2 cut(s) 372, 410
PdiI GCCGGC 1 cut(s) 296
PkrI GCNGC 2 cut(s) 194, 300
PleI GAGTC 2 cut(s) 22, 257
PmaCI CACGTG 1 cut(s) 438
PmlI CACGTG 1 cut(s) 438
PpsI GAGTC 2 cut(s) 22, 257
Ppu21I YACGTR 1 cut(s) 438
Psp6I CCWGG 1 cut(s) 31
PspCI CACGTG 1 cut(s) 438
PspGI CCWGG 1 cut(s) 31
PspN4I GGNNCC 3 cut(s) 222, 302, 501
PspPI GGNCC 3 cut(s) 232, 241, 476
PstNI CAGNNNCTG 1 cut(s) 32
RsaI GTAC 4 cut(s) 269, 282, 347, 366
RsaNI GTAC 4 cut(s) 268, 281, 346, 365
SaqAI TTAA 2 cut(s) 120, 523
SatI GCNGC 2 cut(s) 193, 299
Sau3AI GATC 1 cut(s) 358
Sau96I GGNCC 3 cut(s) 232, 241, 476
SchI GAGTC 2 cut(s) 23, 257
ScrFI CCNGG 1 cut(s) 33
SduI GDGCHC 1 cut(s) 329
SetI ASST 2 cut(s) 22, 440
SfaNI GCATC 3 cut(s) 32, 81, 148
SinI GGWCC 2 cut(s) 232, 476
Sse9I AATT 1 cut(s) 454
SsiI CCGC 6 cut(s) 11, 90, 190, 193, 298, 320
StyD4I CCNGG 1 cut(s) 31
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 2 cut(s) 220, 369
TaiI ACGT 1 cut(s) 440
TaqI TCGA 2 cut(s) 246, 411
TasI AATT 1 cut(s) 454
TatI WGTACW 1 cut(s) 345
TauI GCSGC 2 cut(s) 195, 301
Tru1I TTAA 2 cut(s) 120, 523
Tru9I TTAA 2 cut(s) 120, 523
TscAI CASTG 1 cut(s) 510
TseFI GTSAC 1 cut(s) 15
Tsp45I GTSAC 1 cut(s) 15
TspGWI ACGGA 1 cut(s) 456
TspRI CASTG 1 cut(s) 510
VpaK11BI GGWCC 2 cut(s) 232, 476
XapI RAATTY 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.