Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009602

Physical Location & Seq

Genomic Coordinates Reverse (-)

6484987 .. 6488372

Gene Structure 3386 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g06430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGGGTCATACAAGTGCGCTCTGCAGTTATGGAGGAGAAAGCAGCAATCAGGTTTAGTTGGGGTTTTGCCAAAGATTTCAAGGGCTTTCCACACCCACAAGACAAATTCAGATCAGCTACTGGGCATTGTGCAATCAGGTGTTGTAAGGCAGTCTACTCCTCGCTCAAGTCATTTGACCAGGGGCATAATCGGAGCCGATGGGATTTCGGTTCTGTCCGGAAGGAAGTTTACTAGAGAATTAATCAATGCTAAGTGGGCTCCATTACAACTTACAAGAAACTATGGAGCAAACAATGTCGTTGCTCGCTTTAGTAGAACCATGTGTTCAGCAGCTTCACAGAAACCGCGAAAAACTCCATCTGAGACTAAGAAAGCCATAACTACTGTGGAGGAGCCTTTTGATGATGCTCCTACATACAATATCCCTCAGAAGCCACTGACATTTGTTGCGGGGGCATCCTATAGTGTTGCCATTCTTATAGGGTTTGGAGTTGCTGGCTTGGCAGCATACTCTGTTTTCAAGGAGCTTATATTTGAACCAAAAGAGTATAAAATCTTTAACAAGGCGCTTAAACGGATTCAAGATGATGCTCAGGTTAGAATGAGGATTGGATTCCCTATTAAAGGATATGGTCAAGAAAGTAGAAATCGTGCTGCTCGACAACGCATTCCAAACAGAATCTGGACTGATGAAGATGGTTTAGAGCATGTAGAGGTCAATTTCTATGTTCGTGGGCCACACGGAGGTGGGAAAGTATTTGCTGAGATGTTCAAAGACACAGACAAGAGATGGAAATACACATATCTGGTTGTCGAGACAACATCACCTTCCCAGTCACGTCTGATGCTCGAGTCCTATCTGCCGGAGTTCAAGCCAGTCCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007275 GO:0008104 GO:0008150 GO:0008535 GO:0009791 GO:0009987 GO:0010257 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017004 GO:0017038 GO:0019866 GO:0022607 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032981 GO:0032991 GO:0033036 GO:0033108 GO:0033365 GO:0033617 GO:0034613 GO:0034622 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065003 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0090351 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIM21

Protein Analysis

296

Amino Acids

33.19

Weight (kDa)

10.02

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIM21	PF08294	152 - 275	1.1e-23	TIM21

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00026
fragaria_vesca	FvH4_7g06430
malus_domestica	MD05G1185000.v1.1 MD10G1173000.v1.1
prunus_persica	Prupe.8G211200_v2.0.a1 Prupe.8G211200_v2.0.a1
pyrus_communis	pycom05g16980 pycom10g14910
rosa_chinensis	RchiOBHm_Chr6g0285911
rosa_laevigata	RLG00000012600
rosa_multiflora	Rmu_co8342957.1_g000001 Rmu_co8417589.1_g000001 Rmu_sc0004808.1_g000002
rosa_roxburghii	Rroxscaffold_7G00182620
rosa_rugosa	Rorug06G0177500 Rorug06G0177500
rosa_samantha	Rh6AG289500 Rh6BG285600 Rh6BG291300 Rh6CG292300 Rh6DG284400
rosa_wichuraiana	Rw6G024940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	155
AccII	CGCG	1 cut(s)	349
AccIII	TCCGGA	1 cut(s)	218
AciI	CCGC	2 cut(s)	347, 452
AcsI	RAATTY	1 cut(s)	106
AfiI	CCNNNNNNNGG	2 cut(s)	626, 746
AgsI	TTSAA	6 cut(s)	81, 523, 539, 584, 775, 874
AjiI	CACGTC	1 cut(s)	842
AjnI	CCWGG	1 cut(s)	179
AleI	CACNNNNGTG	1 cut(s)	747
AluBI	AGCT	3 cut(s)	118, 335, 529
AluI	AGCT	3 cut(s)	118, 335, 529
Alw26I	GTCTC	2 cut(s)	359, 812
AlwNI	CAGNNNCTG	2 cut(s)	121, 684
Ama87I	CYCGRG	1 cut(s)	851
Aor13HI	TCCGGA	1 cut(s)	218
AoxI	GGCC	1 cut(s)	737
ApeKI	GCWGC	4 cut(s)	43, 332, 506, 656
ApoI	RAATTY	1 cut(s)	106
AseI	ATTAAT	1 cut(s)	242
AspLEI	GCGC	2 cut(s)	20, 571
AspS9I	GGNCC	1 cut(s)	737
AsuHPI	GGTGA	1 cut(s)	819
AvaI	CYCGRG	1 cut(s)	851
BanII	GRGCYC	1 cut(s)	262
BarI	GAAGNNNNNNTAC	2 cut(s)	214, 246
BbvI	GCAGC	4 cut(s)	55, 344, 518, 643
BccI	CCATC	4 cut(s)	194, 367, 692, 786
BciT130I	CCWGG	1 cut(s)	181
BcoDI	GTCTC	2 cut(s)	359, 812
BfaI	CTAG	2 cut(s)	234, 886
BfmI	CTRYAG	2 cut(s)	23, 463
BfoI	RGCGCY	1 cut(s)	572
BisI	GCNGC	4 cut(s)	44, 333, 507, 657
BlsI	GCNGC	4 cut(s)	45, 334, 508, 658
Bme1390I	CCNGG	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	851
BmgBI	CACGTC	1 cut(s)	842
BmgT120I	GGNCC	1 cut(s)	737
BmiI	GGNNCC	3 cut(s)	196, 261, 396
BmrFI	CCNGG	1 cut(s)	181
BmrI	ACTGGG	2 cut(s)	131, 829
BmsI	GCATC	4 cut(s)	397, 467, 580, 837
BmuI	ACTGGG	2 cut(s)	131, 829
Bpu10I	CCTNAGC	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	151
BsaJI	CCNNGG	1 cut(s)	180
BsaWI	WCCGGW	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	2 cut(s)	626, 746
Bse1I	ACTGG	3 cut(s)	126, 835, 878
BseAI	TCCGGA	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	1 cut(s)	458
BseLI	CCNNNNNNNGG	2 cut(s)	626, 746
BseMII	CTCAG	4 cut(s)	354, 443, 608, 756
BseNI	ACTGG	3 cut(s)	126, 835, 878
BseRI	GAGGAG	3 cut(s)	49, 150, 407
BseXI	GCAGC	4 cut(s)	55, 344, 518, 643
Bsh1236I	CGCG	1 cut(s)	349
BshFI	GGCC	1 cut(s)	739
BsiHKCI	CYCGRG	1 cut(s)	851
BsiSI	CCGG	2 cut(s)	219, 866
BslFI	GGGAC	1 cut(s)	866
BslI	CCNNNNNNNGG	2 cut(s)	626, 746
BsmAI	GTCTC	2 cut(s)	359, 812
BsmFI	GGGAC	1 cut(s)	866
BsmI	GAATGC	1 cut(s)	669
BsnI	GGCC	1 cut(s)	739
BsoBI	CYCGRG	1 cut(s)	851
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp13I	TCCGGA	1 cut(s)	218
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	2 cut(s)	347, 452
BspANI	GGCC	1 cut(s)	739
BspCNI	CTCAG	4 cut(s)	355, 442, 607, 757
BspEI	TCCGGA	1 cut(s)	218
BspFNI	CGCG	1 cut(s)	349
BspLI	GGNNCC	3 cut(s)	196, 261, 396
BspMAI	CTGCAG	1 cut(s)	27
BsrI	ACTGG	3 cut(s)	126, 835, 878
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	1 cut(s)	112
Bst2UI	CCWGG	1 cut(s)	181
Bst4CI	ACNGT	1 cut(s)	388
BstC8I	GCNNGC	2 cut(s)	307, 499
BstDEI	CTNAG	6 cut(s)	252, 363, 369, 429, 594, 765
BstENI	CCTNNNNNAGG	1 cut(s)	624
BstF5I	GGATG	1 cut(s)	458
BstFNI	CGCG	1 cut(s)	349
BstH2I	RGCGCY	1 cut(s)	572
BstHHI	GCGC	2 cut(s)	20, 571
BstKTI	GATC	1 cut(s)	115
BstMAI	GTCTC	2 cut(s)	359, 812
BstMBI	GATC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	2 cut(s)	257, 503
BstNI	CCWGG	1 cut(s)	181
BstNSI	RCATGY	1 cut(s)	713
BstSCI	CCNGG	1 cut(s)	179
BstSFI	CTRYAG	2 cut(s)	23, 463
BstUI	CGCG	1 cut(s)	349
BstV1I	GCAGC	4 cut(s)	55, 344, 518, 643
BsuRI	GGCC	1 cut(s)	739
BtrI	CACGTC	1 cut(s)	842
BtsCI	GGATG	1 cut(s)	458
BtsIMutI	CAGTG	1 cut(s)	437
Cac8I	GCNNGC	2 cut(s)	307, 499
CaiI	CAGNNNCTG	2 cut(s)	121, 684
CfoI	GCGC	2 cut(s)	20, 571
Cfr13I	GGNCC	1 cut(s)	737
CviAII	CATG	2 cut(s)	322, 710
DdeI	CTNAG	6 cut(s)	252, 363, 369, 429, 594, 765
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	262
Eco88I	CYCGRG	1 cut(s)	851
EcoNI	CCTNNNNNAGG	1 cut(s)	624
EcoRII	CCWGG	1 cut(s)	179
EcoT38I	GRGCYC	1 cut(s)	262
FaeI	CATG	2 cut(s)	325, 713
FaqI	GGGAC	1 cut(s)	866
FatI	CATG	2 cut(s)	321, 709
FauI	CCCGC	1 cut(s)	445
FblI	GTMKAC	1 cut(s)	155
Fnu4HI	GCNGC	4 cut(s)	44, 333, 507, 657
FokI	GGATG	1 cut(s)	445
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	4 cut(s)	44, 333, 507, 657
FspBI	CTAG	2 cut(s)	234, 886
GlaI	GCGC	2 cut(s)	19, 570
GluI	GCNGC	4 cut(s)	44, 333, 507, 657
HaeII	RGCGCY	1 cut(s)	572
HaeIII	GGCC	1 cut(s)	739
HapII	CCGG	2 cut(s)	219, 866
HhaI	GCGC	2 cut(s)	20, 571
Hin1II	CATG	2 cut(s)	325, 713
Hin6I	GCGC	2 cut(s)	18, 569
HinP1I	GCGC	2 cut(s)	18, 569
HinfI	GANTC	4 cut(s)	580, 615, 681, 854
HpaII	CCGG	2 cut(s)	219, 866
HphI	GGTGA	1 cut(s)	819
Hpy166II	GTNNAC	2 cut(s)	156, 231
Hpy188I	TCNGA	5 cut(s)	112, 194, 364, 432, 846
Hpy188III	TCNNGA	5 cut(s)	219, 584, 638, 685, 817
Hpy8I	GTNNAC	2 cut(s)	156, 231
HpyAV	CCTTC	2 cut(s)	216, 840
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4IV	ACGT	1 cut(s)	841
HpyCH4V	TGCA	2 cut(s)	25, 133
HpyF10VI	GCNNNNNNNGC	2 cut(s)	257, 503
HpyF3I	CTNAG	6 cut(s)	252, 363, 369, 429, 594, 765
HpySE526I	ACGT	1 cut(s)	841
Hsp92II	CATG	2 cut(s)	325, 713
HspAI	GCGC	2 cut(s)	18, 569
Kpn2I	TCCGGA	1 cut(s)	218
Kzo9I	GATC	1 cut(s)	112
LmnI	GCTCC	6 cut(s)	194, 265, 287, 394, 415, 526
Lsp1109I	GCAGC	4 cut(s)	55, 344, 518, 643
LweI	GCATC	4 cut(s)	397, 467, 580, 837
MaeI	CTAG	2 cut(s)	234, 886
MaeII	ACGT	1 cut(s)	841
MaeIII	GTNAC	1 cut(s)	837
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	1 cut(s)	707
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	3 cut(s)	106, 239, 721
MlyI	GAGTC	1 cut(s)	863
MnlI	CCTC	7 cut(s)	27, 171, 385, 438, 600, 709, 740
MroI	TCCGGA	1 cut(s)	218
MseI	TTAA	4 cut(s)	242, 561, 573, 624
MslI	CAYNNNNRTG	2 cut(s)	13, 747
MspI	CCGG	2 cut(s)	219, 866
MspR9I	CCNGG	1 cut(s)	181
Mva1269I	GAATGC	1 cut(s)	669
MvaI	CCWGG	1 cut(s)	181
MvnI	CGCG	1 cut(s)	349
MwoI	GCNNNNNNNGC	2 cut(s)	257, 503
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	2 cut(s)	325, 713
NlaIV	GGNNCC	3 cut(s)	196, 261, 396
NmuCI	GTSAC	1 cut(s)	837
NspI	RCATGY	1 cut(s)	713
OliI	CACNNNNGTG	1 cut(s)	747
PaeR7I	CTCGAG	1 cut(s)	851
PcsI	WCGNNNNNNNCGW	1 cut(s)	658
PctI	GAATGC	1 cut(s)	669
PfeI	GAWTC	3 cut(s)	580, 615, 681
PkrI	GCNGC	4 cut(s)	45, 334, 508, 658
PleI	GAGTC	1 cut(s)	862
PpsI	GAGTC	1 cut(s)	862
PshBI	ATTAAT	1 cut(s)	242
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspN4I	GGNNCC	3 cut(s)	196, 261, 396
PspPI	GGNCC	1 cut(s)	737
PspXI	VCTCGAGB	1 cut(s)	851
PstI	CTGCAG	1 cut(s)	27
PstNI	CAGNNNCTG	2 cut(s)	121, 684
RseI	CAYNNNNRTG	2 cut(s)	13, 747
SaqAI	TTAA	4 cut(s)	242, 561, 573, 624
SatI	GCNGC	4 cut(s)	44, 333, 507, 657
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	1 cut(s)	737
SchI	GAGTC	1 cut(s)	863
ScrFI	CCNGG	1 cut(s)	181
SduI	GDGCHC	1 cut(s)	262
SfaNI	GCATC	4 cut(s)	397, 467, 580, 837
SfcI	CTRYAG	2 cut(s)	23, 463
Sfr274I	CTCGAG	1 cut(s)	851
SlaI	CTCGAG	1 cut(s)	851
SmiMI	CAYNNNNRTG	2 cut(s)	13, 747
SmlI	CTYRAG	2 cut(s)	166, 851
SmoI	CTYRAG	2 cut(s)	166, 851
Sse9I	AATT	3 cut(s)	106, 239, 721
SsiI	CCGC	2 cut(s)	347, 452
SspMI	CTAG	2 cut(s)	234, 886
StyD4I	CCNGG	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	388
TaiI	ACGT	1 cut(s)	844
TaqI	TCGA	3 cut(s)	661, 816, 852
TasI	AATT	3 cut(s)	106, 239, 721
TfiI	GAWTC	3 cut(s)	580, 615, 681
Tru1I	TTAA	4 cut(s)	242, 561, 573, 624
Tru9I	TTAA	4 cut(s)	242, 561, 573, 624
TscAI	CASTG	1 cut(s)	444
TseFI	GTSAC	1 cut(s)	837
TseI	GCWGC	4 cut(s)	43, 332, 506, 656
Tsp45I	GTSAC	1 cut(s)	837
TspDTI	ATGAA	1 cut(s)	708
TspGWI	ACGGA	2 cut(s)	592, 759
TspRI	CASTG	1 cut(s)	444
VspI	ATTAAT	1 cut(s)	242
XagI	CCTNNNNNAGG	1 cut(s)	624
XapI	RAATTY	1 cut(s)	106
XceI	RCATGY	1 cut(s)	713
XcmI	CCANNNNNNNNNTGG	2 cut(s)	385, 681
XhoI	CTCGAG	1 cut(s)	851
XmiI	GTMKAC	1 cut(s)	155
XspI	CTAG	2 cut(s)	234, 886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.