Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009602

Physical Location & Seq

Genomic Coordinates Reverse (-)

19546118 .. 19549479

Gene Structure 3362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G211200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGGGTCATACAAGTGTGCTTTGGAGTTATGGAGAAAAAAGCAAACAGATGTTATTAGGGTTTTGCCCAAGATGAGATTGTGGGGATACAGAGCTTCCCACACAGAGGAGGCCAAGCCAGATCAGTTGCTGGCAGTACTGAAATCAGGATGTGCAAGTCAATCTACTGCTTCTGCAAACCATTTGACTAGGGGCATAGCTGGAGCTGATGGAATTCCTGTTCTATATGGAAGGAAGTGCGCTAGAGAGTTAATGTCTACTTCTTGGCCACAATTTCAACCCACAAGAAACTATATAGCAAGTTCCAGCATTCCTCAATTTTGTAGATCCATTTCATCAAAAGCTTCACGGCAACCACGACAAAGTCCATCTGAGAATAAGAAAGACTTATCTACTGTAGAGGATCCTTTTGATGCTCCTACATACAACATCCCAGAAAAGCCTGTGACATTTGTAGAGGGAGCTTCCTACAGTGTAGTTATTCTTGCAGGGCTTGGAATTGCTGCTGCCGCAGGATATGCAGTCTTTAAGGAGCTTATTTTTGAACCGAAAGAGTACAAGATCTTTAACAAGGCTCTTAAAAGGGTTCAAGATGATGCACAGGTTAGGATGAGGGTGGGATACCCTATTACAGGGTATGGTCAAGAAAGTAGAAACCGTGCTGCTCGCCAACGTATTCCCAACAGAATATGGCACGATGAAGAAGGGGTAGAGCACGTAGAGGTTAATTTTTATATACGAGGGCCTCATGGAGCTGGGAAAGTATTTGCCGAGATGTTCAATGACCAAGCAGACAAGCAATGGAAGTACACATATTTGATTGTTCAGATACAAGCACCTTCGCCAGCACAACTGATTTTAGAGTCTTATCTGCCAAGTTATAACGCAGCCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007275 GO:0008104 GO:0008150 GO:0008535 GO:0009791 GO:0009987 GO:0010257 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017004 GO:0017038 GO:0019866 GO:0022607 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032981 GO:0032991 GO:0033036 GO:0033108 GO:0033365 GO:0033617 GO:0034613 GO:0034622 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065003 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0090351 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIM21

Protein Analysis

299

Amino Acids

33.45

Weight (kDa)

9.35

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00026
fragaria_vesca	FvH4_7g06430
malus_domestica	MD05G1185000.v1.1 MD10G1173000.v1.1
prunus_persica	Prupe.8G211200_v2.0.a1 Prupe.8G211200_v2.0.a1
pyrus_communis	pycom05g16980 pycom10g14910
rosa_chinensis	RchiOBHm_Chr6g0285911
rosa_laevigata	RLG00000012600
rosa_multiflora	Rmu_co8342957.1_g000001 Rmu_co8417589.1_g000001 Rmu_sc0004808.1_g000002
rosa_roxburghii	Rroxscaffold_7G00182620
rosa_rugosa	Rorug06G0177500 Rorug06G0177500
rosa_samantha	Rh6AG289500 Rh6BG285600 Rh6BG291300 Rh6CG292300 Rh6DG284400
rosa_wichuraiana	Rw6G024940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	882
AccI	GTMKAC	1 cut(s)	257
AciI	CCGC	1 cut(s)	510
AclWI	GGATC	3 cut(s)	321, 398, 411
AcoI	YGGCCR	1 cut(s)	266
AcsI	RAATTY	1 cut(s)	213
AfaI	GTAC	3 cut(s)	138, 557, 809
AfiI	CCNNNNNNNGG	2 cut(s)	106, 632
AgsI	TTSAA	4 cut(s)	278, 545, 590, 781
AloI	GAACNNNNNNTCC	2 cut(s)	204, 236
AluBI	AGCT	7 cut(s)	95, 200, 206, 344, 464, 535, 755
AluI	AGCT	7 cut(s)	95, 200, 206, 344, 464, 535, 755
Alw21I	GWGCWC	1 cut(s)	717
AlwI	GGATC	3 cut(s)	321, 398, 411
AlwNI	CAGNNNCTG	1 cut(s)	130
AoxI	GGCC	3 cut(s)	111, 266, 743
ApeKI	GCWGC	4 cut(s)	503, 506, 662, 887
ApoI	RAATTY	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	242
AspS9I	GGNCC	1 cut(s)	743
BalI	TGGCCA	1 cut(s)	268
BamHI	GGATCC	1 cut(s)	403
Bbv12I	GWGCWC	1 cut(s)	717
BbvI	GCAGC	3 cut(s)	490, 493, 649
BccI	CCATC	2 cut(s)	203, 376
BceAI	ACGGC	1 cut(s)	365
BciVI	GTATCC	2 cut(s)	80, 614
BfaI	CTAG	2 cut(s)	189, 243
BfmI	CTRYAG	2 cut(s)	396, 469
BfuI	GTATCC	2 cut(s)	80, 614
BglII	AGATCT	1 cut(s)	561
BisI	GCNGC	5 cut(s)	504, 507, 510, 663, 888
BlsI	GCNGC	5 cut(s)	505, 508, 511, 664, 889
BmcAI	AGTACT	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	743
BmiI	GGNNCC	1 cut(s)	405
BmsI	GCATC	2 cut(s)	403, 586
BpmI	CTGGAG	1 cut(s)	222
BsaAI	YACGTR	1 cut(s)	718
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 632
Bse3DI	GCAATG	1 cut(s)	806
BseGI	GGATG	3 cut(s)	155, 429, 615
BseLI	CCNNNNNNNGG	2 cut(s)	106, 632
BseMI	GCAATG	1 cut(s)	806
BseMII	CTCAG	1 cut(s)	363
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	3 cut(s)	490, 493, 649
BseYI	CCCAGC	1 cut(s)	755
BshFI	GGCC	3 cut(s)	113, 268, 745
BsiHKAI	GWGCWC	1 cut(s)	717
BslI	CCNNNNNNNGG	2 cut(s)	106, 632
BsmI	GAATGC	1 cut(s)	309
BsnI	GGCC	3 cut(s)	113, 268, 745
Bsp1286I	GDGCHC	1 cut(s)	717
Bsp143I	GATC	4 cut(s)	121, 326, 403, 561
BspACI	CCGC	1 cut(s)	510
BspANI	GGCC	3 cut(s)	113, 268, 745
BspCNI	CTCAG	1 cut(s)	364
BspLI	GGNNCC	1 cut(s)	405
BspPI	GGATC	3 cut(s)	321, 398, 411
BsrDI	GCAATG	1 cut(s)	806
BssMI	GATC	4 cut(s)	121, 326, 403, 561
Bst4CI	ACNGT	3 cut(s)	397, 473, 659
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstBAI	YACGTR	1 cut(s)	718
BstC8I	GCNNGC	3 cut(s)	132, 667, 846
BstDEI	CTNAG	1 cut(s)	372
BstENI	CCTNNNNNAGG	1 cut(s)	630
BstF5I	GGATG	3 cut(s)	155, 429, 615
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	4 cut(s)	124, 329, 406, 564
BstMBI	GATC	4 cut(s)	121, 326, 403, 561
BstMWI	GCNNNNNNNGC	2 cut(s)	509, 518
BstSFI	CTRYAG	2 cut(s)	396, 469
BstV1I	GCAGC	3 cut(s)	490, 493, 649
BstX2I	RGATCY	3 cut(s)	326, 403, 561
BstYI	RGATCY	3 cut(s)	326, 403, 561
BsuI	GTATCC	2 cut(s)	80, 614
BsuRI	GGCC	3 cut(s)	113, 268, 745
BtsCI	GGATG	3 cut(s)	155, 429, 615
BtsIMutI	CAGTG	1 cut(s)	478
Cac8I	GCNNGC	3 cut(s)	132, 667, 846
CaiI	CAGNNNCTG	1 cut(s)	130
CfoI	GCGC	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	743
Csp6I	GTAC	3 cut(s)	137, 556, 808
CviAII	CATG	1 cut(s)	749
CviQI	GTAC	3 cut(s)	137, 556, 808
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	4 cut(s)	123, 328, 405, 563
DpnII	GATC	4 cut(s)	121, 326, 403, 561
EaeI	YGGCCR	1 cut(s)	266
EcoNI	CCTNNNNNAGG	1 cut(s)	630
EcoO109I	RGGNCCY	1 cut(s)	743
EcoRI	GAATTC	1 cut(s)	213
FaeI	CATG	1 cut(s)	752
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FatI	CATG	1 cut(s)	748
FblI	GTMKAC	1 cut(s)	257
Fnu4HI	GCNGC	5 cut(s)	504, 507, 510, 663, 888
FokI	GGATG	3 cut(s)	162, 416, 622
Fsp4HI	GCNGC	5 cut(s)	504, 507, 510, 663, 888
FspBI	CTAG	2 cut(s)	189, 243
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	5 cut(s)	504, 507, 510, 663, 888
GsaI	CCCAGC	1 cut(s)	759
GsuI	CTGGAG	1 cut(s)	222
HaeIII	GGCC	3 cut(s)	113, 268, 745
HhaI	GCGC	1 cut(s)	242
Hin1II	CATG	1 cut(s)	752
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HindIII	AAGCTT	1 cut(s)	342
HinfI	GANTC	1 cut(s)	863
Hpy166II	GTNNAC	2 cut(s)	258, 810
Hpy188I	TCNGA	2 cut(s)	373, 828
Hpy188III	TCNNGA	3 cut(s)	147, 590, 644
Hpy8I	GTNNAC	2 cut(s)	258, 810
HpyAV	CCTTC	3 cut(s)	225, 698, 849
HpyCH4III	ACNGT	3 cut(s)	397, 473, 659
HpyCH4IV	ACGT	2 cut(s)	673, 717
HpyCH4V	TGCA	5 cut(s)	155, 176, 488, 521, 599
HpyF10VI	GCNNNNNNNGC	2 cut(s)	509, 518
HpyF3I	CTNAG	1 cut(s)	372
HpySE526I	ACGT	2 cut(s)	673, 717
Hsp92II	CATG	1 cut(s)	752
HspAI	GCGC	1 cut(s)	240
Kzo9I	GATC	4 cut(s)	121, 326, 403, 561
LmnI	GCTCC	5 cut(s)	203, 421, 461, 532, 752
Lsp1109I	GCAGC	3 cut(s)	490, 493, 649
LweI	GCATC	2 cut(s)	403, 586
MaeI	CTAG	2 cut(s)	189, 243
MaeII	ACGT	2 cut(s)	673, 717
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	4 cut(s)	123, 328, 405, 563
MboI	GATC	4 cut(s)	121, 326, 403, 561
MboII	GAAGA	1 cut(s)	713
MflI	RGATCY	3 cut(s)	326, 403, 561
MhlI	GDGCHC	1 cut(s)	717
MlsI	TGGCCA	1 cut(s)	268
MluCI	AATT	5 cut(s)	213, 272, 317, 498, 727
MluNI	TGGCCA	1 cut(s)	268
MlyI	GAGTC	1 cut(s)	872
MnlI	CCTC	9 cut(s)	100, 103, 324, 394, 451, 606, 715, 734, 756
Mox20I	TGGCCA	1 cut(s)	268
MscI	TGGCCA	1 cut(s)	268
MseI	TTAA	5 cut(s)	251, 528, 567, 579, 726
MslI	CAYNNNNRTG	1 cut(s)	13
Msp20I	TGGCCA	1 cut(s)	268
Mva1269I	GAATGC	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	509, 518
NdeII	GATC	4 cut(s)	121, 326, 403, 561
NlaIII	CATG	1 cut(s)	752
NlaIV	GGNNCC	1 cut(s)	405
NmeAIII	GCCGAG	1 cut(s)	796
NmuCI	GTSAC	1 cut(s)	445
PcsI	WCGNNNNNNNCGW	1 cut(s)	355
PctI	GAATGC	1 cut(s)	309
PflFI	GACNNNGTC	1 cut(s)	363
PkrI	GCNGC	5 cut(s)	505, 508, 511, 664, 889
PleI	GAGTC	1 cut(s)	871
PpsI	GAGTC	1 cut(s)	871
Ppu21I	YACGTR	1 cut(s)	718
PsiI	TTATAA	1 cut(s)	882
PspFI	CCCAGC	1 cut(s)	755
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	1 cut(s)	743
PstNI	CAGNNNCTG	1 cut(s)	130
PsuI	RGATCY	3 cut(s)	326, 403, 561
PsyI	GACNNNGTC	1 cut(s)	363
RsaI	GTAC	3 cut(s)	138, 557, 809
RsaNI	GTAC	3 cut(s)	137, 556, 808
RseI	CAYNNNNRTG	1 cut(s)	13
SaqAI	TTAA	5 cut(s)	251, 528, 567, 579, 726
SatI	GCNGC	5 cut(s)	504, 507, 510, 663, 888
Sau3AI	GATC	4 cut(s)	121, 326, 403, 561
Sau96I	GGNCC	1 cut(s)	743
ScaI	AGTACT	1 cut(s)	138
SchI	GAGTC	1 cut(s)	872
SduI	GDGCHC	1 cut(s)	717
SfaNI	GCATC	2 cut(s)	403, 586
SfcI	CTRYAG	2 cut(s)	396, 469
SmiMI	CAYNNNNRTG	1 cut(s)	13
Sse9I	AATT	5 cut(s)	213, 272, 317, 498, 727
SsiI	CCGC	1 cut(s)	510
SspMI	CTAG	2 cut(s)	189, 243
TaaI	ACNGT	3 cut(s)	397, 473, 659
TaiI	ACGT	2 cut(s)	676, 720
TasI	AATT	5 cut(s)	213, 272, 317, 498, 727
TatI	WGTACW	3 cut(s)	136, 555, 807
TauI	GCSGC	1 cut(s)	512
Tru1I	TTAA	5 cut(s)	251, 528, 567, 579, 726
Tru9I	TTAA	5 cut(s)	251, 528, 567, 579, 726
TscAI	CASTG	1 cut(s)	478
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	4 cut(s)	503, 506, 662, 887
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	2 cut(s)	324, 714
TspRI	CASTG	1 cut(s)	478
Tth111I	GACNNNGTC	1 cut(s)	363
XagI	CCTNNNNNAGG	1 cut(s)	630
XapI	RAATTY	1 cut(s)	213
XmiI	GTMKAC	1 cut(s)	257
XspI	CTAG	2 cut(s)	189, 243
ZrmI	AGTACT	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.