Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004808.1

Orthogroup ID

OG0009602

Physical Location & Seq

Genomic Coordinates Reverse (-)

19060 .. 20822

Gene Structure 1763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004808.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgtcttcagaagcttcacagaaaccgcgaagaaatcaatctgagactaagaaagacatatccactgtggaagagccttttgatgatgctcctacgtacaatatccctcagaagccactgacatttgttgagggggcatcctatagtgttgtcattcttatcgggtttggaattgctggcttggcagcatatgccgtttttaaagagcttatttttgaaccaaaagagtacaaaatctttaacaaggcgcttaaacggattcaagatgatgctcaggttagaatgagggttggataccctattacaggatatggtcaagaaagtagaaatcgtgctgctcgacaacgcattccaaacagaatgtggactgatgaagatggtttagagcacgttgaggtcaatttctatgtccgtgggccgcacggagctgggaaagtattcgctgagatgttcaaagacgtagacaagaggtggaaatacacatatctggttgtcgagacaacatcaccttcccaatcacgtctgatcctagagtcgtatctgccggactacaagccagccccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007275 GO:0008104 GO:0008150 GO:0008535 GO:0009791 GO:0009987 GO:0010257 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017004 GO:0017038 GO:0019866 GO:0022607 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032981 GO:0032991 GO:0033036 GO:0033108 GO:0033365 GO:0033617 GO:0034613 GO:0034622 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065003 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0090351 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIM21

Protein Analysis

188

Amino Acids

21.54

Weight (kDa)

8.63

Isoelectric Point (pI)

49.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00026
fragaria_vesca	FvH4_7g06430
malus_domestica	MD05G1185000.v1.1 MD10G1173000.v1.1
prunus_persica	Prupe.8G211200_v2.0.a1 Prupe.8G211200_v2.0.a1
pyrus_communis	pycom05g16980 pycom10g14910
rosa_chinensis	RchiOBHm_Chr6g0285911
rosa_laevigata	RLG00000012600
rosa_multiflora	Rmu_co8342957.1_g000001 Rmu_co8417589.1_g000001 Rmu_sc0004808.1_g000002
rosa_roxburghii	Rroxscaffold_7G00182620
rosa_rugosa	Rorug06G0177500 Rorug06G0177500
rosa_samantha	Rh6AG289500 Rh6BG285600 Rh6BG291300 Rh6CG292300 Rh6DG284400
rosa_wichuraiana	Rw6G024940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	462
AccII	CGCG	1 cut(s)	28
AciI	CCGC	2 cut(s)	26, 419
AclWI	GGATC	1 cut(s)	520
AfaI	GTAC	2 cut(s)	98, 230
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgsI	TTSAA	3 cut(s)	218, 263, 454
AjiI	CACGTC	1 cut(s)	521
AluBI	AGCT	3 cut(s)	14, 208, 428
AluI	AGCT	3 cut(s)	14, 208, 428
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	2 cut(s)	38, 491
AlwI	GGATC	1 cut(s)	520
AoxI	GGCC	1 cut(s)	416
ApeKI	GCWGC	2 cut(s)	185, 335
Asp700I	GAANNNNTTC	1 cut(s)	437
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	1 cut(s)	416
AsuHPI	GGTGA	1 cut(s)	498
Bbv12I	GWGCWC	1 cut(s)	390
BbvI	GCAGC	2 cut(s)	197, 322
BccI	CCATC	1 cut(s)	371
BceAI	ACGGC	1 cut(s)	179
BciVI	GTATCC	1 cut(s)	287
BcoDI	GTCTC	2 cut(s)	38, 491
BfaI	CTAG	2 cut(s)	530, 565
BfmI	CTRYAG	1 cut(s)	142
BfoI	RGCGCY	1 cut(s)	251
BfuI	GTATCC	1 cut(s)	287
BisI	GCNGC	3 cut(s)	186, 336, 419
BlsI	GCNGC	3 cut(s)	187, 337, 420
BmgBI	CACGTC	1 cut(s)	521
BmgT120I	GGNCC	1 cut(s)	416
BmsI	GCATC	3 cut(s)	76, 146, 259
Bpu10I	CCTNAGC	1 cut(s)	273
BsaAI	YACGTR	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	412
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	412
BseGI	GGATG	1 cut(s)	137
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMII	CTCAG	4 cut(s)	33, 122, 287, 435
BseXI	GCAGC	2 cut(s)	197, 322
BseYI	CCCAGC	1 cut(s)	428
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	418
BsiHKAI	GWGCWC	1 cut(s)	390
BsiSI	CCGG	1 cut(s)	545
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	2 cut(s)	38, 491
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	1 cut(s)	418
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	1 cut(s)	525
BspACI	CCGC	2 cut(s)	26, 419
BspANI	GGCC	1 cut(s)	418
BspCNI	CTCAG	4 cut(s)	34, 121, 286, 436
BspFNI	CGCG	1 cut(s)	28
BspPI	GGATC	1 cut(s)	520
BspQI	GCTCTTC	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	412
BssMI	GATC	1 cut(s)	525
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	1 cut(s)	66
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstBAI	YACGTR	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	178, 558
BstDEI	CTNAG	5 cut(s)	42, 48, 108, 273, 444
BstDSI	CCRYGG	1 cut(s)	412
BstENI	CCTNNNNNAGG	1 cut(s)	303
BstF5I	GGATG	1 cut(s)	137
BstFNI	CGCG	1 cut(s)	28
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	1 cut(s)	528
BstMAI	GTCTC	2 cut(s)	38, 491
BstMBI	GATC	1 cut(s)	525
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 191
BstSFI	CTRYAG	1 cut(s)	142
BstSNI	TACGTA	1 cut(s)	96
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	2 cut(s)	197, 322
BsuI	GTATCC	1 cut(s)	287
BsuRI	GGCC	1 cut(s)	418
BtgI	CCRYGG	1 cut(s)	412
BtrI	CACGTC	1 cut(s)	521
BtsCI	GGATG	1 cut(s)	137
BtsIMutI	CAGTG	2 cut(s)	63, 116
Cac8I	GCNNGC	2 cut(s)	178, 558
CfoI	GCGC	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	416
Csp6I	GTAC	2 cut(s)	97, 229
CviJI	RGCY	9 cut(s)	14, 76, 115, 180, 208, 418, 428, 556, 560
CviKI_1	RGCY	9 cut(s)	14, 76, 115, 180, 208, 418, 428, 556, 560
CviQI	GTAC	2 cut(s)	97, 229
DdeI	CTNAG	5 cut(s)	42, 48, 108, 273, 444
DpnI	GATC	1 cut(s)	527
DpnII	GATC	1 cut(s)	525
DraI	TTTAAA	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Eco105I	TACGTA	1 cut(s)	96
EcoNI	CCTNNNNNAGG	1 cut(s)	303
FaiI	YATR	7 cut(s)	59, 144, 190, 192, 312, 408, 484
FauNDI	CATATG	1 cut(s)	190
FblI	GTMKAC	1 cut(s)	462
Fnu4HI	GCNGC	3 cut(s)	186, 336, 419
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	3 cut(s)	186, 336, 419
FspBI	CTAG	2 cut(s)	530, 565
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	3 cut(s)	186, 336, 419
GsaI	CCCAGC	1 cut(s)	432
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	418
HapII	CCGG	1 cut(s)	545
HhaI	GCGC	1 cut(s)	250
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	2 cut(s)	259, 533
HpaII	CCGG	1 cut(s)	545
HphI	GGTGA	1 cut(s)	498
Hpy166II	GTNNAC	2 cut(s)	366, 463
Hpy188I	TCNGA	4 cut(s)	10, 43, 111, 525
Hpy188III	TCNNGA	3 cut(s)	263, 317, 496
Hpy8I	GTNNAC	2 cut(s)	366, 463
HpyAV	CCTTC	1 cut(s)	519
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4IV	ACGT	4 cut(s)	95, 390, 459, 520
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 191
HpyF3I	CTNAG	5 cut(s)	42, 48, 108, 273, 444
HpySE526I	ACGT	4 cut(s)	95, 390, 459, 520
HspAI	GCGC	1 cut(s)	248
Kzo9I	GATC	1 cut(s)	525
LguI	GCTCTTC	1 cut(s)	66
LmnI	GCTCC	2 cut(s)	94, 425
LpnPI	CCDG	6 cut(s)	162, 260, 291, 414, 473, 558
Lsp1109I	GCAGC	2 cut(s)	197, 322
LweI	GCATC	3 cut(s)	76, 146, 259
MaeI	CTAG	2 cut(s)	530, 565
MaeII	ACGT	4 cut(s)	95, 390, 459, 520
MalI	GATC	1 cut(s)	527
MboI	GATC	1 cut(s)	525
MboII	GAAGA	3 cut(s)	42, 83, 386
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	2 cut(s)	171, 400
MlyI	GAGTC	1 cut(s)	542
MmeI	TCCRAC	1 cut(s)	271
MnlI	CCTC	5 cut(s)	117, 124, 279, 388, 462
MroXI	GAANNNNTTC	1 cut(s)	437
MseI	TTAA	3 cut(s)	201, 240, 252
MspI	CCGG	1 cut(s)	545
Mva1269I	GAATGC	1 cut(s)	348
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	2 cut(s)	182, 191
NdeI	CATATG	1 cut(s)	190
NdeII	GATC	1 cut(s)	525
PciSI	GCTCTTC	1 cut(s)	66
PcsI	WCGNNNNNNNCGW	1 cut(s)	337
PctI	GAATGC	1 cut(s)	348
PdmI	GAANNNNTTC	1 cut(s)	437
PfeI	GAWTC	1 cut(s)	259
PkrI	GCNGC	3 cut(s)	187, 337, 420
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
Ppu21I	YACGTR	1 cut(s)	96
PspFI	CCCAGC	1 cut(s)	428
PspPI	GGNCC	1 cut(s)	416
RsaI	GTAC	2 cut(s)	98, 230
RsaNI	GTAC	2 cut(s)	97, 229
SapI	GCTCTTC	1 cut(s)	66
SaqAI	TTAA	3 cut(s)	201, 240, 252
SatI	GCNGC	3 cut(s)	186, 336, 419
Sau3AI	GATC	1 cut(s)	525
Sau96I	GGNCC	1 cut(s)	416
SchI	GAGTC	1 cut(s)	542
SduI	GDGCHC	1 cut(s)	390
SfaNI	GCATC	3 cut(s)	76, 146, 259
SfcI	CTRYAG	1 cut(s)	142
SnaBI	TACGTA	1 cut(s)	96
Sse9I	AATT	2 cut(s)	171, 400
SsiI	CCGC	2 cut(s)	26, 419
SspMI	CTAG	2 cut(s)	530, 565
TaaI	ACNGT	1 cut(s)	67
TaiI	ACGT	4 cut(s)	98, 393, 462, 523
TaqI	TCGA	2 cut(s)	340, 495
TasI	AATT	2 cut(s)	171, 400
TatI	WGTACW	1 cut(s)	228
TauI	GCSGC	1 cut(s)	421
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	3 cut(s)	201, 240, 252
Tru9I	TTAA	3 cut(s)	201, 240, 252
TscAI	CASTG	2 cut(s)	70, 123
TseI	GCWGC	2 cut(s)	185, 335
TspDTI	ATGAA	1 cut(s)	387
TspGWI	ACGGA	3 cut(s)	271, 401, 438
TspRI	CASTG	2 cut(s)	70, 123
XagI	CCTNNNNNAGG	1 cut(s)	303
XcmI	CCANNNNNNNNNTGG	1 cut(s)	360
XmiI	GTMKAC	1 cut(s)	462
XmnI	GAANNNNTTC	1 cut(s)	437
XspI	CTAG	2 cut(s)	530, 565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.