Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8417589.1

Orthogroup ID

OG0009602

Physical Location & Seq

Genomic Coordinates Forward (+)

340 .. 1195

Gene Structure 856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8417589.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atgtcttcagaagcttcacagaaaccgcgaagaaatcaatctgagactaagaaagacatatccactgtggaggagccttttgatgatgctcctacgtacaatatccctcagaagccactgacatttgttgagggggcatcctatagtgttgtcattcttatcgggtttggaattgctggcttggcagcatatgccgtttttaaagagcttatttttgaaccaaaagagtacaaaatctttaacaaggcgcttaaacggattcaagatgatgctcaggttagtaaatctttttgtcctccaaatttcatgaacaacatatcttttaggatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007275 GO:0008104 GO:0008150 GO:0008535 GO:0009791 GO:0009987 GO:0010257 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017004 GO:0017038 GO:0019866 GO:0022607 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032981 GO:0032991 GO:0033036 GO:0033108 GO:0033365 GO:0033617 GO:0034613 GO:0034622 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065003 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0090351 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIM21

Protein Analysis

110

Amino Acids

12.41

Weight (kDa)

7.79

Isoelectric Point (pI)

57.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00026
fragaria_vesca	FvH4_7g06430
malus_domestica	MD05G1185000.v1.1 MD10G1173000.v1.1
prunus_persica	Prupe.8G211200_v2.0.a1 Prupe.8G211200_v2.0.a1
pyrus_communis	pycom05g16980 pycom10g14910
rosa_chinensis	RchiOBHm_Chr6g0285911
rosa_laevigata	RLG00000012600
rosa_multiflora	Rmu_co8342957.1_g000001 Rmu_co8417589.1_g000001 Rmu_sc0004808.1_g000002
rosa_roxburghii	Rroxscaffold_7G00182620
rosa_rugosa	Rorug06G0177500 Rorug06G0177500
rosa_samantha	Rh6AG289500 Rh6BG285600 Rh6BG291300 Rh6CG292300 Rh6DG284400
rosa_wichuraiana	Rw6G024940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	28
AciI	CCGC	1 cut(s)	26
AcsI	RAATTY	1 cut(s)	301
AfaI	GTAC	2 cut(s)	98, 230
AgsI	TTSAA	2 cut(s)	218, 263
AluBI	AGCT	2 cut(s)	14, 208
AluI	AGCT	2 cut(s)	14, 208
Alw26I	GTCTC	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	1 cut(s)	301
AspLEI	GCGC	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	197
BceAI	ACGGC	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	142
BfoI	RGCGCY	1 cut(s)	251
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
BmiI	GGNNCC	1 cut(s)	75
BmsI	GCATC	3 cut(s)	76, 146, 259
Bpu10I	CCTNAGC	1 cut(s)	273
BsaAI	YACGTR	1 cut(s)	96
BseGI	GGATG	1 cut(s)	137
BseMII	CTCAG	3 cut(s)	33, 122, 287
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	197
Bsh1236I	CGCG	1 cut(s)	28
BsmAI	GTCTC	1 cut(s)	38
BspACI	CCGC	1 cut(s)	26
BspCNI	CTCAG	3 cut(s)	34, 121, 286
BspFNI	CGCG	1 cut(s)	28
BspHI	TCATGA	1 cut(s)	306
BspLI	GGNNCC	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	67
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstBAI	YACGTR	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	4 cut(s)	42, 48, 108, 273
BstF5I	GGATG	1 cut(s)	137
BstFNI	CGCG	1 cut(s)	28
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	250
BstMAI	GTCTC	1 cut(s)	38
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 191
BstSFI	CTRYAG	1 cut(s)	142
BstSNI	TACGTA	1 cut(s)	96
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	197
BtsCI	GGATG	1 cut(s)	137
BtsIMutI	CAGTG	2 cut(s)	63, 116
Cac8I	GCNNGC	1 cut(s)	178
CciI	TCATGA	1 cut(s)	306
CfoI	GCGC	1 cut(s)	250
Csp6I	GTAC	2 cut(s)	97, 229
CviAII	CATG	1 cut(s)	307
CviJI	RGCY	5 cut(s)	14, 76, 115, 180, 208
CviKI_1	RGCY	5 cut(s)	14, 76, 115, 180, 208
CviQI	GTAC	2 cut(s)	97, 229
DdeI	CTNAG	4 cut(s)	42, 48, 108, 273
DraI	TTTAAA	1 cut(s)	202
Eco105I	TACGTA	1 cut(s)	96
FaeI	CATG	1 cut(s)	310
FaiI	YATR	6 cut(s)	59, 144, 190, 192, 308, 317
FatI	CATG	1 cut(s)	306
FauNDI	CATATG	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	186
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	1 cut(s)	186
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	1 cut(s)	186
HaeII	RGCGCY	1 cut(s)	251
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	1 cut(s)	310
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	1 cut(s)	259
Hpy188I	TCNGA	3 cut(s)	10, 43, 111
Hpy188III	TCNNGA	2 cut(s)	263, 307
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4IV	ACGT	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 191
HpyF3I	CTNAG	4 cut(s)	42, 48, 108, 273
HpySE526I	ACGT	1 cut(s)	95
Hsp92II	CATG	1 cut(s)	310
HspAI	GCGC	1 cut(s)	248
LmnI	GCTCC	2 cut(s)	73, 94
LpnPI	CCDG	2 cut(s)	162, 260
Lsp1109I	GCAGC	1 cut(s)	197
LweI	GCATC	3 cut(s)	76, 146, 259
MaeII	ACGT	1 cut(s)	95
MboII	GAAGA	1 cut(s)	42
MluCI	AATT	2 cut(s)	171, 301
MnlI	CCTC	4 cut(s)	64, 117, 124, 306
MseI	TTAA	4 cut(s)	201, 240, 252, 331
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	2 cut(s)	182, 191
NdeI	CATATG	1 cut(s)	190
NlaIII	CATG	1 cut(s)	310
NlaIV	GGNNCC	1 cut(s)	75
PagI	TCATGA	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	259
PkrI	GCNGC	1 cut(s)	187
Ppu21I	YACGTR	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	75
RsaI	GTAC	2 cut(s)	98, 230
RsaNI	GTAC	2 cut(s)	97, 229
SaqAI	TTAA	4 cut(s)	201, 240, 252, 331
SatI	GCNGC	1 cut(s)	186
SetI	ASST	4 cut(s)	16, 98, 210, 279
SfaNI	GCATC	3 cut(s)	76, 146, 259
SfcI	CTRYAG	1 cut(s)	142
SgeI	CNNG	8 cut(s)	39, 175, 189, 193, 256, 275, 287, 319
SnaBI	TACGTA	1 cut(s)	96
Sse9I	AATT	2 cut(s)	171, 301
SsiI	CCGC	1 cut(s)	26
TaaI	ACNGT	1 cut(s)	67
TaiI	ACGT	1 cut(s)	98
TasI	AATT	2 cut(s)	171, 301
TatI	WGTACW	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	4 cut(s)	201, 240, 252, 331
Tru9I	TTAA	4 cut(s)	201, 240, 252, 331
TscAI	CASTG	2 cut(s)	70, 123
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	2 cut(s)	295, 323
TspGWI	ACGGA	1 cut(s)	271
TspRI	CASTG	2 cut(s)	70, 123
XapI	RAATTY	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.