Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009602

Physical Location & Seq

Genomic Coordinates Forward (+)

51047785 .. 51051119

Gene Structure 3335 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG285600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAAATCATGTTTGGCAGAAATTTCGGTTCTGTCTGGAAGGAATTTTACTAGAGAATTAATCAATACTAAGTGGGCTCCATTACAACTTACGAGAAACTACGGAGCAAACAATGTTGTTCCTCGCTTTAGTAGAACCATGTCTTCAGAAGCTTTACAGAAACCGCAAAGAAATCGATCTGAGACTAAGAAAGACATATCCACTGTGGAGGAGCCTTTTGATGATGCTCCTACGTACAATATCCCTCAGAAGCCACTGACATTTGTTGAGGGGGCATCCTATAGTGTTGTCATTCTTATCGGGTTTGGAATTGCTGGCTTGGCAGCATATGCCGTTTTTAAGGAGCTTATTTTTGAACCAAAAGAGTACAAAATCTTTAACAAGGCGCTTAAACGGATACAAGATGATGCTCAGGTTAGAATGAGGGTTGGATACCCTATTACAGGATATGGTCAAGAAAGTAGAAATCGTGCTGCTCGACAACGCATTCCAAACAGAATGTGGACTGACGAAGATGGTTTAGAGTCAATTTCTACGTTCGGGGGCCACATGGAGCAGGGAAAGTATTTGCTGAGATGTTCAAAGACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007275 GO:0008104 GO:0008150 GO:0008535 GO:0009791 GO:0009987 GO:0010257 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017004 GO:0017038 GO:0019866 GO:0022607 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032981 GO:0032991 GO:0033036 GO:0033108 GO:0033365 GO:0033617 GO:0034613 GO:0034622 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065003 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0090351 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIM21

Protein Analysis

196

Amino Acids

22.28

Weight (kDa)

9.54

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIM21	PF08294	91 - 176	1.9e-14	TIM21

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00026
fragaria_vesca	FvH4_7g06430
malus_domestica	MD05G1185000.v1.1 MD10G1173000.v1.1
prunus_persica	Prupe.8G211200_v2.0.a1 Prupe.8G211200_v2.0.a1
pyrus_communis	pycom05g16980 pycom10g14910
rosa_chinensis	RchiOBHm_Chr6g0285911
rosa_laevigata	RLG00000012600
rosa_multiflora	Rmu_co8342957.1_g000001 Rmu_co8417589.1_g000001 Rmu_sc0004808.1_g000002
rosa_roxburghii	Rroxscaffold_7G00182620
rosa_rugosa	Rorug06G0177500 Rorug06G0177500
rosa_samantha	Rh6AG289500 Rh6BG285600 Rh6BG291300 Rh6CG292300 Rh6DG284400
rosa_wichuraiana	Rw6G024940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	164
AcsI	RAATTY	2 cut(s)	21, 43
AcuI	CTGAAG	1 cut(s)	129
AfaI	GTAC	2 cut(s)	236, 368
AfiI	CCNNNNNNNGG	1 cut(s)	443
AgsI	TTSAA	2 cut(s)	356, 582
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AluBI	AGCT	2 cut(s)	152, 346
AluI	AGCT	2 cut(s)	152, 346
Alw26I	GTCTC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	544
ApeKI	GCWGC	2 cut(s)	323, 473
ApoI	RAATTY	2 cut(s)	21, 43
AseI	ATTAAT	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	388
AspS9I	GGNCC	1 cut(s)	544
BanII	GRGCYC	1 cut(s)	79
BarI	GAAGNNNNNNTAC	2 cut(s)	31, 63
BbsI	GAAGAC	1 cut(s)	135
BbvI	GCAGC	2 cut(s)	335, 460
BccI	CCATC	1 cut(s)	509
BceAI	ACGGC	1 cut(s)	317
BcgI	CGANNNNNNTGC	4 cut(s)	6, 40, 155, 189
BciVI	GTATCC	2 cut(s)	390, 425
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	51
BfmI	CTRYAG	1 cut(s)	280
BfoI	RGCGCY	1 cut(s)	389
BfuI	GTATCC	2 cut(s)	390, 425
BisI	GCNGC	2 cut(s)	324, 474
BlsI	GCNGC	2 cut(s)	325, 475
BmgT120I	GGNCC	1 cut(s)	544
BmiI	GGNNCC	3 cut(s)	78, 213, 545
BmsI	GCATC	3 cut(s)	214, 284, 397
BpiI	GAAGAC	1 cut(s)	135
Bpu10I	CCTNAGC	1 cut(s)	411
Bsa29I	ATCGAT	1 cut(s)	175
BsaAI	YACGTR	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
BseCI	ATCGAT	1 cut(s)	175
BseGI	GGATG	1 cut(s)	275
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMII	CTCAG	4 cut(s)	171, 260, 425, 563
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	2 cut(s)	335, 460
BshFI	GGCC	1 cut(s)	546
BshVI	ATCGAT	1 cut(s)	175
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmAI	GTCTC	1 cut(s)	176
BsmI	GAATGC	1 cut(s)	486
BsnI	GGCC	1 cut(s)	546
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	176
BspACI	CCGC	1 cut(s)	164
BspANI	GGCC	1 cut(s)	546
BspCNI	CTCAG	4 cut(s)	172, 259, 424, 564
BspDI	ATCGAT	1 cut(s)	175
BspLI	GGNNCC	3 cut(s)	78, 213, 545
BssMI	GATC	1 cut(s)	176
Bst4CI	ACNGT	1 cut(s)	205
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstBAI	YACGTR	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	6 cut(s)	69, 180, 186, 246, 411, 572
BstENI	CCTNNNNNAGG	1 cut(s)	441
BstF5I	GGATG	1 cut(s)	275
BstH2I	RGCGCY	1 cut(s)	389
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	1 cut(s)	179
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	1 cut(s)	176
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 329
BstSFI	CTRYAG	1 cut(s)	280
BstSNI	TACGTA	1 cut(s)	234
BstV1I	GCAGC	2 cut(s)	335, 460
BstV2I	GAAGAC	1 cut(s)	135
Bsu15I	ATCGAT	1 cut(s)	175
BsuI	GTATCC	2 cut(s)	390, 425
BsuRI	GGCC	1 cut(s)	546
BsuTUI	ATCGAT	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	275
BtsIMutI	CAGTG	2 cut(s)	201, 254
Cac8I	GCNNGC	1 cut(s)	316
CfoI	GCGC	1 cut(s)	388
Cfr13I	GGNCC	1 cut(s)	544
ClaI	ATCGAT	1 cut(s)	175
Csp6I	GTAC	2 cut(s)	235, 367
CviAII	CATG	3 cut(s)	9, 139, 550
CviJI	RGCY	7 cut(s)	77, 152, 214, 253, 318, 346, 546
CviKI_1	RGCY	7 cut(s)	77, 152, 214, 253, 318, 346, 546
CviQI	GTAC	2 cut(s)	235, 367
DdeI	CTNAG	6 cut(s)	69, 180, 186, 246, 411, 572
DpnI	GATC	1 cut(s)	178
DpnII	GATC	1 cut(s)	176
Eco105I	TACGTA	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	129
EcoNI	CCTNNNNNAGG	1 cut(s)	441
EcoT38I	GRGCYC	1 cut(s)	79
FaeI	CATG	3 cut(s)	12, 142, 553
FaiI	YATR	8 cut(s)	10, 140, 197, 282, 328, 330, 450, 551
FatI	CATG	3 cut(s)	8, 138, 549
FauNDI	CATATG	1 cut(s)	328
Fnu4HI	GCNGC	2 cut(s)	324, 474
FokI	GGATG	1 cut(s)	262
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	2 cut(s)	324, 474
FspBI	CTAG	1 cut(s)	51
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	2 cut(s)	324, 474
HaeII	RGCGCY	1 cut(s)	389
HaeIII	GGCC	1 cut(s)	546
HhaI	GCGC	1 cut(s)	388
Hin1II	CATG	3 cut(s)	12, 142, 553
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HindIII	AAGCTT	1 cut(s)	150
HinfI	GANTC	1 cut(s)	524
Hpy166II	GTNNAC	1 cut(s)	504
Hpy188I	TCNGA	3 cut(s)	148, 181, 249
Hpy188III	TCNNGA	2 cut(s)	36, 455
Hpy8I	GTNNAC	1 cut(s)	504
HpyAV	CCTTC	1 cut(s)	33
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	3 cut(s)	233, 536, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 329
HpyF3I	CTNAG	6 cut(s)	69, 180, 186, 246, 411, 572
HpySE526I	ACGT	3 cut(s)	233, 536, 587
Hsp92II	CATG	3 cut(s)	12, 142, 553
HspAI	GCGC	1 cut(s)	386
Kzo9I	GATC	1 cut(s)	176
LmnI	GCTCC	6 cut(s)	82, 104, 211, 232, 343, 553
LpnPI	CCDG	5 cut(s)	21, 300, 398, 429, 542
Lsp1109I	GCAGC	2 cut(s)	335, 460
LweI	GCATC	3 cut(s)	214, 284, 397
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	3 cut(s)	233, 536, 587
MalI	GATC	1 cut(s)	178
MboI	GATC	1 cut(s)	176
MboII	GAAGA	2 cut(s)	135, 524
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	5 cut(s)	21, 43, 56, 309, 528
MlyI	GAGTC	1 cut(s)	533
MmeI	TCCRAC	1 cut(s)	409
MnlI	CCTC	5 cut(s)	132, 202, 255, 262, 417
MseI	TTAA	4 cut(s)	59, 339, 378, 390
Mva1269I	GAATGC	1 cut(s)	486
MwoI	GCNNNNNNNGC	2 cut(s)	320, 329
NdeI	CATATG	1 cut(s)	328
NdeII	GATC	1 cut(s)	176
NlaIII	CATG	3 cut(s)	12, 142, 553
NlaIV	GGNNCC	3 cut(s)	78, 213, 545
PcsI	WCGNNNNNNNCGW	1 cut(s)	475
PctI	GAATGC	1 cut(s)	486
PkrI	GCNGC	2 cut(s)	325, 475
PleI	GAGTC	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	532
Ppu21I	YACGTR	1 cut(s)	234
PshBI	ATTAAT	1 cut(s)	59
PspN4I	GGNNCC	3 cut(s)	78, 213, 545
PspPI	GGNCC	1 cut(s)	544
RsaI	GTAC	2 cut(s)	236, 368
RsaNI	GTAC	2 cut(s)	235, 367
SaqAI	TTAA	4 cut(s)	59, 339, 378, 390
SatI	GCNGC	2 cut(s)	324, 474
Sau3AI	GATC	1 cut(s)	176
Sau96I	GGNCC	1 cut(s)	544
SchI	GAGTC	1 cut(s)	533
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	6 cut(s)	154, 236, 348, 417, 539, 590
SfaNI	GCATC	3 cut(s)	214, 284, 397
SfcI	CTRYAG	1 cut(s)	280
SnaBI	TACGTA	1 cut(s)	234
Sse9I	AATT	5 cut(s)	21, 43, 56, 309, 528
SsiI	CCGC	1 cut(s)	164
SspMI	CTAG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	3 cut(s)	236, 539, 590
TaqI	TCGA	2 cut(s)	175, 478
TasI	AATT	5 cut(s)	21, 43, 56, 309, 528
TatI	WGTACW	1 cut(s)	366
Tru1I	TTAA	4 cut(s)	59, 339, 378, 390
Tru9I	TTAA	4 cut(s)	59, 339, 378, 390
TscAI	CASTG	2 cut(s)	208, 261
TseI	GCWGC	2 cut(s)	323, 473
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	117, 409
TspRI	CASTG	2 cut(s)	208, 261
VspI	ATTAAT	1 cut(s)	59
XagI	CCTNNNNNAGG	1 cut(s)	441
XapI	RAATTY	2 cut(s)	21, 43
XcmI	CCANNNNNNNNNTGG	1 cut(s)	498
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.