Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009602

Physical Location & Seq

Genomic Coordinates Forward (+)

21718989 .. 21724582

Gene Structure 5594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00182620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGCTAATTGCCACGTCACATCTCCACTTGCCACTAGCCGACAGCTTCGGGATTCCACGCGCGAGCAGCCTTACATGACAAGAAACTGCGGCTCACCTCCATTGCCGGCGTCACCACGGTGGAGGCTTGGGGTCATTCAAGTGTGCTCTGCAGCTATGGAGGAGAAAGCAATCAGATTTAGTTGGGGTTTTGCCAAAGATTTCAAGGGCCTTCCACACCCAGAAGACAACTTCAGATCAGCTACTGGGAATGGTGCAGTCTGGTGTTGCAAGGCGGTCTACTGCTCACTCAAGTCATTTGACCAGGGTGAGCGCATAGTTGGAACTGATGGAATTTCGGTTCTGTCTGGAAGGAATTTTACTAGAGAATTAATCAATACTAAGTGGGCTCCATTACAACTTACGAGAAACTATGGAGCAAACAATGTTGTTCCTCGCTTTAGTAGAACCATGTCTTCAGAAGCTTCACAGAAACCGCGAAGAAATCAATCTGAGACTAAGAAAGACATATCCACTGTGGAGGAGCCTTTTGATGATGCTCCTACGTACAATATCCCTCAGAAGCCACTGACATTTGTTGAGGGGGCATCCTATAGTGTTGTCATTCTTATCGGGTTTGGAATTGCTGGCTTGGCAGCATATGCCGTTTTTAAGGAGCTTATTTTTGAACCAAAAGAGTACAAAATCTTTAACAAGGCGCTTAAACGGATTCAAGATGATGCTCAGGTTAGAATGAGGGTTGGATACCCTATTACAGGATATGGTCAAGAAAGTAGAAATCGTGCTGCTCGACAACGCATTCCAAACAGAATGTGGACTGATGAAGATGGTTTAGAGCACGTAGAGGTCAATTTCTATGTCCGTGGGCCGCACGGAGCTGGGAAAGTATTCGCTGAGATGTTCAAAGACGGAGACAAGAGGTGGAAATACACATATCTGGTTGTCGAGACAACATCACCTTCCCAATCACGTCTGATCCTAGAGTCCTATCTGCCGGAGTACAAGCCAGCCCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007275 GO:0008104 GO:0008150 GO:0008535 GO:0009791 GO:0009987 GO:0010257 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017004 GO:0017038 GO:0019866 GO:0022607 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032981 GO:0032991 GO:0033036 GO:0033108 GO:0033365 GO:0033617 GO:0034613 GO:0034622 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065003 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0090351 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIM21

Protein Analysis

338

Amino Acids

38.22

Weight (kDa)

9.32

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIM21	PF08294	195 - 327	5.4e-24	TIM21

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00026
fragaria_vesca	FvH4_7g06430
malus_domestica	MD05G1185000.v1.1 MD10G1173000.v1.1
prunus_persica	Prupe.8G211200_v2.0.a1 Prupe.8G211200_v2.0.a1
pyrus_communis	pycom05g16980 pycom10g14910
rosa_chinensis	RchiOBHm_Chr6g0285911
rosa_laevigata	RLG00000012600
rosa_multiflora	Rmu_co8342957.1_g000001 Rmu_co8417589.1_g000001 Rmu_sc0004808.1_g000002
rosa_roxburghii	Rroxscaffold_7G00182620
rosa_rugosa	Rorug06G0177500 Rorug06G0177500
rosa_samantha	Rh6AG289500 Rh6BG285600 Rh6BG291300 Rh6CG292300 Rh6DG284400
rosa_wichuraiana	Rw6G024940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	279
AccII	CGCG	3 cut(s)	61, 63, 478
AciI	CCGC	4 cut(s)	90, 275, 476, 869
AclWI	GGATC	1 cut(s)	970
AcsI	RAATTY	2 cut(s)	333, 355
AcuI	CTGAAG	2 cut(s)	217, 441
AcyI	GRCGYC	1 cut(s)	110
AfaI	GTAC	3 cut(s)	548, 680, 1001
AfiI	CCNNNNNNNGG	1 cut(s)	755
AgsI	TTSAA	5 cut(s)	140, 205, 668, 713, 904
AjiI	CACGTC	2 cut(s)	16, 971
AjnI	CCWGG	1 cut(s)	303
AleI	CACNNNNGTG	1 cut(s)	118
AloI	GAACNNNNNNTCC	2 cut(s)	324, 356
AluBI	AGCT	6 cut(s)	46, 155, 242, 464, 658, 878
AluI	AGCT	6 cut(s)	46, 155, 242, 464, 658, 878
Alw21I	GWGCWC	2 cut(s)	149, 840
Alw26I	GTCTC	3 cut(s)	488, 906, 941
AlwI	GGATC	1 cut(s)	970
AlwNI	CAGNNNCTG	1 cut(s)	245
AoxI	GGCC	2 cut(s)	208, 866
ApeKI	GCWGC	4 cut(s)	67, 152, 635, 785
ApoI	RAATTY	2 cut(s)	333, 355
AseI	ATTAAT	1 cut(s)	371
Asp700I	GAANNNNTTC	1 cut(s)	887
AspLEI	GCGC	3 cut(s)	63, 315, 700
AspS9I	GGNCC	2 cut(s)	208, 866
AsuHPI	GGTGA	4 cut(s)	87, 105, 320, 948
BanII	GRGCYC	1 cut(s)	391
BarI	GAAGNNNNNNTAC	2 cut(s)	343, 375
BbsI	GAAGAC	2 cut(s)	231, 447
Bbv12I	GWGCWC	2 cut(s)	149, 840
BbvI	GCAGC	4 cut(s)	79, 164, 647, 772
BccI	CCATC	2 cut(s)	323, 821
BceAI	ACGGC	1 cut(s)	629
BciT130I	CCWGG	1 cut(s)	305
BciVI	GTATCC	1 cut(s)	737
BcoDI	GTCTC	3 cut(s)	488, 906, 941
BfaI	CTAG	4 cut(s)	36, 363, 980, 1015
BfmI	CTRYAG	2 cut(s)	150, 592
BfoI	RGCGCY	1 cut(s)	701
BfuI	GTATCC	1 cut(s)	737
BisI	GCNGC	6 cut(s)	68, 91, 153, 636, 786, 869
BlsI	GCNGC	6 cut(s)	69, 92, 154, 637, 787, 870
Bme1390I	CCNGG	1 cut(s)	305
BmgBI	CACGTC	2 cut(s)	16, 971
BmgT120I	GGNCC	2 cut(s)	208, 866
BmiI	GGNNCC	2 cut(s)	390, 525
BmrFI	CCNGG	1 cut(s)	305
BmrI	ACTGGG	1 cut(s)	255
BmsI	GCATC	3 cut(s)	526, 596, 709
BmuI	ACTGGG	1 cut(s)	255
BpiI	GAAGAC	2 cut(s)	231, 447
Bpu10I	CCTNAGC	1 cut(s)	723
BpuEI	CTTGAG	1 cut(s)	275
BsaAI	YACGTR	2 cut(s)	546, 841
BsaHI	GRCGYC	1 cut(s)	110
BsaJI	CCNNGG	3 cut(s)	116, 304, 862
Bsc4I	CCNNNNNNNGG	1 cut(s)	755
Bse118I	RCCGGY	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	250
Bse3DI	GCAATG	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	3 cut(s)	116, 304, 862
BseGI	GGATG	1 cut(s)	587
BseLI	CCNNNNNNNGG	1 cut(s)	755
BseMI	GCAATG	1 cut(s)	101
BseMII	CTCAG	4 cut(s)	483, 572, 737, 885
BseNI	ACTGG	1 cut(s)	250
BseRI	GAGGAG	2 cut(s)	176, 536
BseXI	GCAGC	4 cut(s)	79, 164, 647, 772
BseYI	CCCAGC	1 cut(s)	878
BsgI	GTGCAG	1 cut(s)	276
Bsh1236I	CGCG	3 cut(s)	61, 63, 478
BshFI	GGCC	2 cut(s)	210, 868
BsiHKAI	GWGCWC	2 cut(s)	149, 840
BsiSI	CCGG	2 cut(s)	107, 995
BslI	CCNNNNNNNGG	1 cut(s)	755
BsmAI	GTCTC	3 cut(s)	488, 906, 941
BsmI	GAATGC	1 cut(s)	798
BsnI	GGCC	2 cut(s)	210, 868
Bsp1286I	GDGCHC	3 cut(s)	149, 391, 840
Bsp143I	GATC	2 cut(s)	236, 975
BspACI	CCGC	4 cut(s)	90, 275, 476, 869
BspANI	GGCC	2 cut(s)	210, 868
BspCNI	CTCAG	4 cut(s)	484, 571, 736, 886
BspFNI	CGCG	3 cut(s)	61, 63, 478
BspLI	GGNNCC	2 cut(s)	390, 525
BspMAI	CTGCAG	1 cut(s)	154
BspPI	GGATC	1 cut(s)	970
BsrDI	GCAATG	1 cut(s)	101
BsrFI	RCCGGY	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	250
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	3 cut(s)	116, 304, 862
BssMI	GATC	2 cut(s)	236, 975
BssNI	GRCGYC	1 cut(s)	110
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	2 cut(s)	120, 517
BstACI	GRCGYC	1 cut(s)	110
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstBAI	YACGTR	2 cut(s)	546, 841
BstC8I	GCNNGC	4 cut(s)	65, 108, 628, 1008
BstDEI	CTNAG	6 cut(s)	381, 492, 498, 558, 723, 894
BstDSI	CCRYGG	2 cut(s)	116, 862
BstENI	CCTNNNNNAGG	1 cut(s)	753
BstF5I	GGATG	1 cut(s)	587
BstFNI	CGCG	3 cut(s)	61, 63, 478
BstH2I	RGCGCY	1 cut(s)	701
BstHHI	GCGC	3 cut(s)	63, 315, 700
BstKTI	GATC	2 cut(s)	239, 978
BstMAI	GTCTC	3 cut(s)	488, 906, 941
BstMBI	GATC	2 cut(s)	236, 975
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 632, 641
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	303
BstSFI	CTRYAG	2 cut(s)	150, 592
BstSNI	TACGTA	1 cut(s)	546
BstUI	CGCG	3 cut(s)	61, 63, 478
BstV1I	GCAGC	4 cut(s)	79, 164, 647, 772
BstV2I	GAAGAC	2 cut(s)	231, 447
BsuI	GTATCC	1 cut(s)	737
BsuRI	GGCC	2 cut(s)	210, 868
BtgI	CCRYGG	2 cut(s)	116, 862
BtrI	CACGTC	2 cut(s)	16, 971
BtsCI	GGATG	1 cut(s)	587
BtsIMutI	CAGTG	2 cut(s)	513, 566
Cac8I	GCNNGC	4 cut(s)	65, 108, 628, 1008
CaiI	CAGNNNCTG	1 cut(s)	245
CfoI	GCGC	3 cut(s)	63, 315, 700
Cfr10I	RCCGGY	1 cut(s)	106
Cfr13I	GGNCC	2 cut(s)	208, 866
CseI	GACGC	1 cut(s)	99
Csp6I	GTAC	3 cut(s)	547, 679, 1000
CviAII	CATG	2 cut(s)	76, 451
CviQI	GTAC	3 cut(s)	547, 679, 1000
DdeI	CTNAG	6 cut(s)	381, 492, 498, 558, 723, 894
DpnI	GATC	2 cut(s)	238, 977
DpnII	GATC	2 cut(s)	236, 975
Eco105I	TACGTA	1 cut(s)	546
Eco24I	GRGCYC	1 cut(s)	391
Eco57I	CTGAAG	2 cut(s)	217, 441
EcoNI	CCTNNNNNAGG	1 cut(s)	753
EcoO109I	RGGNCCY	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	391
FaeI	CATG	2 cut(s)	79, 454
FatI	CATG	2 cut(s)	75, 450
FauNDI	CATATG	1 cut(s)	640
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	6 cut(s)	68, 91, 153, 636, 786, 869
FokI	GGATG	1 cut(s)	574
FriOI	GRGCYC	1 cut(s)	391
Fsp4HI	GCNGC	6 cut(s)	68, 91, 153, 636, 786, 869
FspBI	CTAG	4 cut(s)	36, 363, 980, 1015
GlaI	GCGC	3 cut(s)	62, 314, 699
GluI	GCNGC	6 cut(s)	68, 91, 153, 636, 786, 869
GsaI	CCCAGC	1 cut(s)	882
HaeII	RGCGCY	1 cut(s)	701
HaeIII	GGCC	2 cut(s)	210, 868
HapII	CCGG	2 cut(s)	107, 995
HgaI	GACGC	1 cut(s)	99
HhaI	GCGC	3 cut(s)	63, 315, 700
Hin1I	GRCGYC	1 cut(s)	110
Hin1II	CATG	2 cut(s)	79, 454
Hin6I	GCGC	3 cut(s)	61, 313, 698
HinP1I	GCGC	3 cut(s)	61, 313, 698
HindIII	AAGCTT	1 cut(s)	462
HinfI	GANTC	3 cut(s)	53, 709, 983
HpaII	CCGG	2 cut(s)	107, 995
HphI	GGTGA	4 cut(s)	87, 105, 320, 948
Hpy166II	GTNNAC	2 cut(s)	280, 816
Hpy188I	TCNGA	6 cut(s)	176, 236, 460, 493, 561, 975
Hpy188III	TCNNGA	5 cut(s)	50, 348, 713, 767, 946
Hpy8I	GTNNAC	2 cut(s)	280, 816
HpyAV	CCTTC	3 cut(s)	221, 345, 969
HpyCH4III	ACNGT	2 cut(s)	120, 517
HpyCH4IV	ACGT	4 cut(s)	15, 545, 840, 970
HpyCH4V	TGCA	3 cut(s)	152, 257, 270
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 632, 641
HpyF3I	CTNAG	6 cut(s)	381, 492, 498, 558, 723, 894
HpySE526I	ACGT	4 cut(s)	15, 545, 840, 970
Hsp92I	GRCGYC	1 cut(s)	110
Hsp92II	CATG	2 cut(s)	79, 454
HspAI	GCGC	3 cut(s)	61, 313, 698
KroI	GCCGGC	1 cut(s)	106
KroNI	GCCGGC	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	236, 975
LmnI	GCTCC	6 cut(s)	394, 416, 523, 544, 655, 875
Lsp1109I	GCAGC	4 cut(s)	79, 164, 647, 772
LweI	GCATC	3 cut(s)	526, 596, 709
MaeI	CTAG	4 cut(s)	36, 363, 980, 1015
MaeII	ACGT	4 cut(s)	15, 545, 840, 970
MaeIII	GTNAC	2 cut(s)	16, 111
MalI	GATC	2 cut(s)	238, 977
MboI	GATC	2 cut(s)	236, 975
MboII	GAAGA	4 cut(s)	236, 447, 492, 836
MhlI	GDGCHC	3 cut(s)	149, 391, 840
MluCI	AATT	6 cut(s)	7, 333, 355, 368, 621, 850
MlyI	GAGTC	1 cut(s)	992
MmeI	TCCRAC	2 cut(s)	301, 721
MroNI	GCCGGC	1 cut(s)	106
MroXI	GAANNNNTTC	1 cut(s)	887
MseI	TTAA	4 cut(s)	371, 651, 690, 702
MslI	CAYNNNNRTG	2 cut(s)	118, 140
MspI	CCGG	2 cut(s)	107, 995
MspR9I	CCNGG	1 cut(s)	305
Mva1269I	GAATGC	1 cut(s)	798
MvaI	CCWGG	1 cut(s)	305
MvnI	CGCG	3 cut(s)	61, 63, 478
MwoI	GCNNNNNNNGC	3 cut(s)	67, 632, 641
NaeI	GCCGGC	1 cut(s)	108
NdeI	CATATG	1 cut(s)	640
NdeII	GATC	2 cut(s)	236, 975
NgoMIV	GCCGGC	1 cut(s)	106
NlaIII	CATG	2 cut(s)	79, 454
NlaIV	GGNNCC	2 cut(s)	390, 525
NmuCI	GTSAC	2 cut(s)	16, 111
OliI	CACNNNNGTG	1 cut(s)	118
PcsI	WCGNNNNNNNCGW	1 cut(s)	787
PctI	GAATGC	1 cut(s)	798
PdiI	GCCGGC	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	887
PfeI	GAWTC	2 cut(s)	53, 709
PkrI	GCNGC	6 cut(s)	69, 92, 154, 637, 787, 870
PleI	GAGTC	1 cut(s)	991
PpsI	GAGTC	1 cut(s)	991
Ppu21I	YACGTR	2 cut(s)	546, 841
PshBI	ATTAAT	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	303
PspFI	CCCAGC	1 cut(s)	878
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	390, 525
PspPI	GGNCC	2 cut(s)	208, 866
PstI	CTGCAG	1 cut(s)	154
PstNI	CAGNNNCTG	1 cut(s)	245
RsaI	GTAC	3 cut(s)	548, 680, 1001
RsaNI	GTAC	3 cut(s)	547, 679, 1000
RseI	CAYNNNNRTG	2 cut(s)	118, 140
SaqAI	TTAA	4 cut(s)	371, 651, 690, 702
SatI	GCNGC	6 cut(s)	68, 91, 153, 636, 786, 869
Sau3AI	GATC	2 cut(s)	236, 975
Sau96I	GGNCC	2 cut(s)	208, 866
SchI	GAGTC	1 cut(s)	992
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	3 cut(s)	149, 391, 840
SfaNI	GCATC	3 cut(s)	526, 596, 709
SfcI	CTRYAG	2 cut(s)	150, 592
SmiMI	CAYNNNNRTG	2 cut(s)	118, 140
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SnaBI	TACGTA	1 cut(s)	546
Sse9I	AATT	6 cut(s)	7, 333, 355, 368, 621, 850
SsiI	CCGC	4 cut(s)	90, 275, 476, 869
SspMI	CTAG	4 cut(s)	36, 363, 980, 1015
StyD4I	CCNGG	1 cut(s)	303
TaaI	ACNGT	2 cut(s)	120, 517
TaiI	ACGT	4 cut(s)	18, 548, 843, 973
TaqI	TCGA	2 cut(s)	790, 945
TasI	AATT	6 cut(s)	7, 333, 355, 368, 621, 850
TatI	WGTACW	2 cut(s)	678, 999
TauI	GCSGC	2 cut(s)	93, 871
TfiI	GAWTC	2 cut(s)	53, 709
Tru1I	TTAA	4 cut(s)	371, 651, 690, 702
Tru9I	TTAA	4 cut(s)	371, 651, 690, 702
TscAI	CASTG	2 cut(s)	520, 573
TseFI	GTSAC	2 cut(s)	16, 111
TseI	GCWGC	4 cut(s)	67, 152, 635, 785
Tsp45I	GTSAC	2 cut(s)	16, 111
TspDTI	ATGAA	1 cut(s)	837
TspGWI	ACGGA	4 cut(s)	721, 851, 888, 924
TspRI	CASTG	2 cut(s)	520, 573
VspI	ATTAAT	1 cut(s)	371
XagI	CCTNNNNNAGG	1 cut(s)	753
XapI	RAATTY	2 cut(s)	333, 355
XcmI	CCANNNNNNNNNTGG	1 cut(s)	810
XmiI	GTMKAC	1 cut(s)	279
XmnI	GAANNNNTTC	1 cut(s)	887
XspI	CTAG	4 cut(s)	36, 363, 980, 1015

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.