Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0009602

Physical Location & Seq

Genomic Coordinates Reverse (-)

47908284 .. 47912257

Gene Structure 3974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG284400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAAATCATGTTTGGCAGAAATTTCGGTTCTGTCTGGAAGGAATTTTACTAGAGAATTAATCAATACTAAGTGGGCTCCATTACAACTTACGAGAAACTATGGAGCAAACAATGTTGTTCCTCGCTTTAGTAGAACCATGTCTTCAGAAGCTTCACAGAATCCGCGAAGAAATCGATCTGAGACTAAGAAAGACATATCCACTGTGGAGGAGCCTTTTGATGATGCTCCTACGTACAATATCCCTCAGAAGCCACTGACATTTGTTGAGGGGGCATCCTATAGTGTTGTCATTCTTATCGGGTTTGGAATTGCTGGCTTGGCAGCATATGCCGTTTTTAAGGAGCTTATTTTTGAACCAAAAGAGTACAAAATCTTTAACAAGGCGCTTAAACGGATTCAAGATGATGCTCAGGTTAGAATGAGGGTTGGATACCCTATTACAGGATATGGTCAAGAAAGTAGAAATCGTGCTGCTCGACAACGCATTCCAAACAGAATGTGGACTGATGAAGATGGTTTAGAGCACGTAGAGGTCAATTTCTATGTCCGTGGGCCGCACGGAGCTGGGAAAGTATTCGCTGAGATGTTCAAAGACGTAGACAAGAGGTGGAAATACACATATCTGGTTGTCGAGACAACATCACCTTCCCAATCACGTCTGATCCTAGAGTCCTATCTGCCGGACTACAAGCCAGCCCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007275 GO:0008104 GO:0008150 GO:0008535 GO:0009791 GO:0009987 GO:0010257 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017004 GO:0017038 GO:0019866 GO:0022607 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032981 GO:0032991 GO:0033036 GO:0033108 GO:0033365 GO:0033617 GO:0034613 GO:0034622 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065003 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0090351 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIM21

Protein Analysis

234

Amino Acids

26.79

Weight (kDa)

9.38

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIM21	PF08294	91 - 223	2.2e-24	TIM21

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00026
fragaria_vesca	FvH4_7g06430
malus_domestica	MD05G1185000.v1.1 MD10G1173000.v1.1
prunus_persica	Prupe.8G211200_v2.0.a1 Prupe.8G211200_v2.0.a1
pyrus_communis	pycom05g16980 pycom10g14910
rosa_chinensis	RchiOBHm_Chr6g0285911
rosa_laevigata	RLG00000012600
rosa_multiflora	Rmu_co8342957.1_g000001 Rmu_co8417589.1_g000001 Rmu_sc0004808.1_g000002
rosa_roxburghii	Rroxscaffold_7G00182620
rosa_rugosa	Rorug06G0177500 Rorug06G0177500
rosa_samantha	Rh6AG289500 Rh6BG285600 Rh6BG291300 Rh6CG292300 Rh6DG284400
rosa_wichuraiana	Rw6G024940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	600
AccII	CGCG	1 cut(s)	166
AciI	CCGC	2 cut(s)	164, 557
AclWI	GGATC	1 cut(s)	658
AcsI	RAATTY	2 cut(s)	21, 43
AcuI	CTGAAG	1 cut(s)	129
AfaI	GTAC	2 cut(s)	236, 368
AfiI	CCNNNNNNNGG	1 cut(s)	443
AgsI	TTSAA	3 cut(s)	356, 401, 592
AjiI	CACGTC	1 cut(s)	659
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AluBI	AGCT	3 cut(s)	152, 346, 566
AluI	AGCT	3 cut(s)	152, 346, 566
Alw21I	GWGCWC	1 cut(s)	528
Alw26I	GTCTC	2 cut(s)	176, 629
AlwI	GGATC	1 cut(s)	658
AoxI	GGCC	1 cut(s)	554
ApeKI	GCWGC	2 cut(s)	323, 473
ApoI	RAATTY	2 cut(s)	21, 43
AseI	ATTAAT	1 cut(s)	59
Asp700I	GAANNNNTTC	1 cut(s)	575
AspLEI	GCGC	1 cut(s)	388
AspS9I	GGNCC	1 cut(s)	554
AsuHPI	GGTGA	1 cut(s)	636
BanII	GRGCYC	1 cut(s)	79
BarI	GAAGNNNNNNTAC	2 cut(s)	31, 63
BbsI	GAAGAC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	528
BbvI	GCAGC	2 cut(s)	335, 460
BccI	CCATC	1 cut(s)	509
BceAI	ACGGC	1 cut(s)	317
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BciVI	GTATCC	1 cut(s)	425
BcoDI	GTCTC	2 cut(s)	176, 629
BfaI	CTAG	3 cut(s)	51, 668, 703
BfmI	CTRYAG	1 cut(s)	280
BfoI	RGCGCY	1 cut(s)	389
BfuI	GTATCC	1 cut(s)	425
BisI	GCNGC	3 cut(s)	324, 474, 557
BlsI	GCNGC	3 cut(s)	325, 475, 558
BmgBI	CACGTC	1 cut(s)	659
BmgT120I	GGNCC	1 cut(s)	554
BmiI	GGNNCC	2 cut(s)	78, 213
BmsI	GCATC	3 cut(s)	214, 284, 397
BpiI	GAAGAC	1 cut(s)	135
Bpu10I	CCTNAGC	1 cut(s)	411
Bsa29I	ATCGAT	1 cut(s)	175
BsaAI	YACGTR	2 cut(s)	234, 529
BsaJI	CCNNGG	1 cut(s)	550
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
BseCI	ATCGAT	1 cut(s)	175
BseDI	CCNNGG	1 cut(s)	550
BseGI	GGATG	1 cut(s)	275
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMII	CTCAG	4 cut(s)	171, 260, 425, 573
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	2 cut(s)	335, 460
BseYI	CCCAGC	1 cut(s)	566
Bsh1236I	CGCG	1 cut(s)	166
BshFI	GGCC	1 cut(s)	556
BshVI	ATCGAT	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	528
BsiSI	CCGG	1 cut(s)	683
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmAI	GTCTC	2 cut(s)	176, 629
BsmI	GAATGC	1 cut(s)	486
BsnI	GGCC	1 cut(s)	556
Bsp1286I	GDGCHC	2 cut(s)	79, 528
Bsp143I	GATC	2 cut(s)	176, 663
BspACI	CCGC	2 cut(s)	164, 557
BspANI	GGCC	1 cut(s)	556
BspCNI	CTCAG	4 cut(s)	172, 259, 424, 574
BspDI	ATCGAT	1 cut(s)	175
BspFNI	CGCG	1 cut(s)	166
BspLI	GGNNCC	2 cut(s)	78, 213
BspPI	GGATC	1 cut(s)	658
BssECI	CCNNGG	1 cut(s)	550
BssMI	GATC	2 cut(s)	176, 663
Bst4CI	ACNGT	1 cut(s)	205
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstBAI	YACGTR	2 cut(s)	234, 529
BstC8I	GCNNGC	2 cut(s)	316, 696
BstDEI	CTNAG	6 cut(s)	69, 180, 186, 246, 411, 582
BstDSI	CCRYGG	1 cut(s)	550
BstENI	CCTNNNNNAGG	1 cut(s)	441
BstF5I	GGATG	1 cut(s)	275
BstFNI	CGCG	1 cut(s)	166
BstH2I	RGCGCY	1 cut(s)	389
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	2 cut(s)	179, 666
BstMAI	GTCTC	2 cut(s)	176, 629
BstMBI	GATC	2 cut(s)	176, 663
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 329
BstSFI	CTRYAG	1 cut(s)	280
BstSNI	TACGTA	1 cut(s)	234
BstUI	CGCG	1 cut(s)	166
BstV1I	GCAGC	2 cut(s)	335, 460
BstV2I	GAAGAC	1 cut(s)	135
Bsu15I	ATCGAT	1 cut(s)	175
BsuI	GTATCC	1 cut(s)	425
BsuRI	GGCC	1 cut(s)	556
BsuTUI	ATCGAT	1 cut(s)	175
BtgI	CCRYGG	1 cut(s)	550
BtrI	CACGTC	1 cut(s)	659
BtsCI	GGATG	1 cut(s)	275
BtsIMutI	CAGTG	2 cut(s)	201, 254
Cac8I	GCNNGC	2 cut(s)	316, 696
CfoI	GCGC	1 cut(s)	388
Cfr13I	GGNCC	1 cut(s)	554
ClaI	ATCGAT	1 cut(s)	175
Csp6I	GTAC	2 cut(s)	235, 367
CviAII	CATG	2 cut(s)	9, 139
CviQI	GTAC	2 cut(s)	235, 367
DdeI	CTNAG	6 cut(s)	69, 180, 186, 246, 411, 582
DpnI	GATC	2 cut(s)	178, 665
DpnII	GATC	2 cut(s)	176, 663
Eco105I	TACGTA	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	129
EcoNI	CCTNNNNNAGG	1 cut(s)	441
EcoT38I	GRGCYC	1 cut(s)	79
FaeI	CATG	2 cut(s)	12, 142
FatI	CATG	2 cut(s)	8, 138
FauNDI	CATATG	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	600
Fnu4HI	GCNGC	3 cut(s)	324, 474, 557
FokI	GGATG	1 cut(s)	262
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	3 cut(s)	324, 474, 557
FspBI	CTAG	3 cut(s)	51, 668, 703
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	3 cut(s)	324, 474, 557
GsaI	CCCAGC	1 cut(s)	570
HaeII	RGCGCY	1 cut(s)	389
HaeIII	GGCC	1 cut(s)	556
HapII	CCGG	1 cut(s)	683
HhaI	GCGC	1 cut(s)	388
Hin1II	CATG	2 cut(s)	12, 142
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HindIII	AAGCTT	1 cut(s)	150
HinfI	GANTC	3 cut(s)	160, 397, 671
HpaII	CCGG	1 cut(s)	683
HphI	GGTGA	1 cut(s)	636
Hpy166II	GTNNAC	2 cut(s)	504, 601
Hpy188I	TCNGA	4 cut(s)	148, 181, 249, 663
Hpy188III	TCNNGA	4 cut(s)	36, 401, 455, 634
Hpy8I	GTNNAC	2 cut(s)	504, 601
HpyAV	CCTTC	2 cut(s)	33, 657
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	4 cut(s)	233, 528, 597, 658
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 329
HpyF3I	CTNAG	6 cut(s)	69, 180, 186, 246, 411, 582
HpySE526I	ACGT	4 cut(s)	233, 528, 597, 658
Hsp92II	CATG	2 cut(s)	12, 142
HspAI	GCGC	1 cut(s)	386
Kzo9I	GATC	2 cut(s)	176, 663
LmnI	GCTCC	6 cut(s)	82, 104, 211, 232, 343, 563
LpnPI	CCDG	7 cut(s)	21, 300, 398, 429, 552, 611, 696
Lsp1109I	GCAGC	2 cut(s)	335, 460
LweI	GCATC	3 cut(s)	214, 284, 397
MaeI	CTAG	3 cut(s)	51, 668, 703
MaeII	ACGT	4 cut(s)	233, 528, 597, 658
MalI	GATC	2 cut(s)	178, 665
MboI	GATC	2 cut(s)	176, 663
MboII	GAAGA	3 cut(s)	135, 180, 524
MhlI	GDGCHC	2 cut(s)	79, 528
MluCI	AATT	5 cut(s)	21, 43, 56, 309, 538
MlyI	GAGTC	1 cut(s)	680
MmeI	TCCRAC	1 cut(s)	409
MnlI	CCTC	7 cut(s)	132, 202, 255, 262, 417, 526, 600
MroXI	GAANNNNTTC	1 cut(s)	575
MseI	TTAA	4 cut(s)	59, 339, 378, 390
MspI	CCGG	1 cut(s)	683
Mva1269I	GAATGC	1 cut(s)	486
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	2 cut(s)	320, 329
NdeI	CATATG	1 cut(s)	328
NdeII	GATC	2 cut(s)	176, 663
NlaIII	CATG	2 cut(s)	12, 142
NlaIV	GGNNCC	2 cut(s)	78, 213
PcsI	WCGNNNNNNNCGW	1 cut(s)	475
PctI	GAATGC	1 cut(s)	486
PdmI	GAANNNNTTC	1 cut(s)	575
PfeI	GAWTC	2 cut(s)	160, 397
PkrI	GCNGC	3 cut(s)	325, 475, 558
PleI	GAGTC	1 cut(s)	679
PpsI	GAGTC	1 cut(s)	679
Ppu21I	YACGTR	2 cut(s)	234, 529
PshBI	ATTAAT	1 cut(s)	59
PspFI	CCCAGC	1 cut(s)	566
PspN4I	GGNNCC	2 cut(s)	78, 213
PspPI	GGNCC	1 cut(s)	554
RsaI	GTAC	2 cut(s)	236, 368
RsaNI	GTAC	2 cut(s)	235, 367
SaqAI	TTAA	4 cut(s)	59, 339, 378, 390
SatI	GCNGC	3 cut(s)	324, 474, 557
Sau3AI	GATC	2 cut(s)	176, 663
Sau96I	GGNCC	1 cut(s)	554
SchI	GAGTC	1 cut(s)	680
SduI	GDGCHC	2 cut(s)	79, 528
SfaNI	GCATC	3 cut(s)	214, 284, 397
SfcI	CTRYAG	1 cut(s)	280
SnaBI	TACGTA	1 cut(s)	234
Sse9I	AATT	5 cut(s)	21, 43, 56, 309, 538
SsiI	CCGC	2 cut(s)	164, 557
SspMI	CTAG	3 cut(s)	51, 668, 703
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	4 cut(s)	236, 531, 600, 661
TaqI	TCGA	3 cut(s)	175, 478, 633
TasI	AATT	5 cut(s)	21, 43, 56, 309, 538
TatI	WGTACW	1 cut(s)	366
TauI	GCSGC	1 cut(s)	559
TfiI	GAWTC	2 cut(s)	160, 397
Tru1I	TTAA	4 cut(s)	59, 339, 378, 390
Tru9I	TTAA	4 cut(s)	59, 339, 378, 390
TscAI	CASTG	2 cut(s)	208, 261
TseI	GCWGC	2 cut(s)	323, 473
TspDTI	ATGAA	2 cut(s)	17, 525
TspGWI	ACGGA	3 cut(s)	409, 539, 576
TspRI	CASTG	2 cut(s)	208, 261
VspI	ATTAAT	1 cut(s)	59
XagI	CCTNNNNNAGG	1 cut(s)	441
XapI	RAATTY	2 cut(s)	21, 43
XcmI	CCANNNNNNNNNTGG	1 cut(s)	498
XmiI	GTMKAC	1 cut(s)	600
XmnI	GAANNNNTTC	1 cut(s)	575
XspI	CTAG	3 cut(s)	51, 668, 703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.