Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8342957.1

Orthogroup ID

OG0009602

Physical Location & Seq

Genomic Coordinates Reverse (-)

448 .. 872

Gene Structure 425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8342957.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

atgagggttggataccctattacaggatatggtcaagaaagtagaaatcgtgctgctcgacaacgcattccaaacagaatgtggactgatgaagatggtttagagcacgttgaggtcaatttctatgtccgtgggccgcacggagctgggaaagtattcgctgagatgttcaaagacgtagacaagaggtggaaatacacatatctggttgtcgagacaacatcaccttcccaatcacgtctgatcctagagtcgtatctgccggactacaagccagccccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007275 GO:0008104 GO:0008150 GO:0008535 GO:0009791 GO:0009987 GO:0010257 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017004 GO:0017038 GO:0019866 GO:0022607 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032981 GO:0032991 GO:0033036 GO:0033108 GO:0033365 GO:0033617 GO:0034613 GO:0034622 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065003 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0090351 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIM21

Protein Analysis

94

Amino Acids

10.97

Weight (kDa)

8.96

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00026
fragaria_vesca	FvH4_7g06430
malus_domestica	MD05G1185000.v1.1 MD10G1173000.v1.1
prunus_persica	Prupe.8G211200_v2.0.a1 Prupe.8G211200_v2.0.a1
pyrus_communis	pycom05g16980 pycom10g14910
rosa_chinensis	RchiOBHm_Chr6g0285911
rosa_laevigata	RLG00000012600
rosa_multiflora	Rmu_co8342957.1_g000001 Rmu_co8417589.1_g000001 Rmu_sc0004808.1_g000002
rosa_roxburghii	Rroxscaffold_7G00182620
rosa_rugosa	Rorug06G0177500 Rorug06G0177500
rosa_samantha	Rh6AG289500 Rh6BG285600 Rh6BG291300 Rh6CG292300 Rh6DG284400
rosa_wichuraiana	Rw6G024940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	180
AciI	CCGC	1 cut(s)	137
AclWI	GGATC	1 cut(s)	238
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	172
AjiI	CACGTC	1 cut(s)	239
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw21I	GWGCWC	1 cut(s)	108
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	1 cut(s)	238
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	1 cut(s)	89
BciVI	GTATCC	1 cut(s)	5
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	2 cut(s)	248, 283
BfuI	GTATCC	1 cut(s)	5
BisI	GCNGC	2 cut(s)	54, 137
BlsI	GCNGC	2 cut(s)	55, 138
BmgBI	CACGTC	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
BseDI	CCNNGG	1 cut(s)	130
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMII	CTCAG	1 cut(s)	153
BseXI	GCAGC	1 cut(s)	40
BseYI	CCCAGC	1 cut(s)	146
BshFI	GGCC	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	209
BsmI	GAATGC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp143I	GATC	1 cut(s)	243
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	1 cut(s)	136
BspCNI	CTCAG	1 cut(s)	154
BspPI	GGATC	1 cut(s)	238
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	1 cut(s)	243
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	1 cut(s)	162
BstDSI	CCRYGG	1 cut(s)	130
BstENI	CCTNNNNNAGG	1 cut(s)	21
BstKTI	GATC	1 cut(s)	246
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	40
BsuI	GTATCC	1 cut(s)	5
BsuRI	GGCC	1 cut(s)	136
BtgI	CCRYGG	1 cut(s)	130
BtrI	CACGTC	1 cut(s)	239
Cac8I	GCNNGC	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	134
CviJI	RGCY	4 cut(s)	136, 146, 274, 278
CviKI_1	RGCY	4 cut(s)	136, 146, 274, 278
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	1 cut(s)	245
DpnII	GATC	1 cut(s)	243
EcoNI	CCTNNNNNAGG	1 cut(s)	21
FaiI	YATR	3 cut(s)	30, 126, 202
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	2 cut(s)	54, 137
Fsp4HI	GCNGC	2 cut(s)	54, 137
FspBI	CTAG	2 cut(s)	248, 283
GluI	GCNGC	2 cut(s)	54, 137
GsaI	CCCAGC	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	136
HapII	CCGG	1 cut(s)	263
HinfI	GANTC	1 cut(s)	251
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	1 cut(s)	216
Hpy166II	GTNNAC	2 cut(s)	84, 181
Hpy188I	TCNGA	1 cut(s)	243
Hpy188III	TCNNGA	2 cut(s)	35, 214
Hpy8I	GTNNAC	2 cut(s)	84, 181
HpyAV	CCTTC	1 cut(s)	237
HpyCH4IV	ACGT	3 cut(s)	108, 177, 238
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	3 cut(s)	108, 177, 238
Kzo9I	GATC	1 cut(s)	243
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	4 cut(s)	9, 132, 191, 276
Lsp1109I	GCAGC	1 cut(s)	40
MaeI	CTAG	2 cut(s)	248, 283
MaeII	ACGT	3 cut(s)	108, 177, 238
MalI	GATC	1 cut(s)	245
MboI	GATC	1 cut(s)	243
MboII	GAAGA	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	1 cut(s)	118
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	2 cut(s)	106, 180
MroXI	GAANNNNTTC	1 cut(s)	155
MspI	CCGG	1 cut(s)	263
Mva1269I	GAATGC	1 cut(s)	66
NdeII	GATC	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	55
PctI	GAATGC	1 cut(s)	66
PdmI	GAANNNNTTC	1 cut(s)	155
PkrI	GCNGC	2 cut(s)	55, 138
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PspFI	CCCAGC	1 cut(s)	146
PspPI	GGNCC	1 cut(s)	134
SatI	GCNGC	2 cut(s)	54, 137
Sau3AI	GATC	1 cut(s)	243
Sau96I	GGNCC	1 cut(s)	134
SchI	GAGTC	1 cut(s)	260
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	7 cut(s)	111, 117, 148, 180, 191, 229, 241
Sse9I	AATT	1 cut(s)	118
SsiI	CCGC	1 cut(s)	137
SspMI	CTAG	2 cut(s)	248, 283
TaiI	ACGT	3 cut(s)	111, 180, 241
TaqI	TCGA	2 cut(s)	58, 213
TasI	AATT	1 cut(s)	118
TauI	GCSGC	1 cut(s)	139
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	105
TspGWI	ACGGA	2 cut(s)	119, 156
XagI	CCTNNNNNAGG	1 cut(s)	21
XcmI	CCANNNNNNNNNTGG	1 cut(s)	78
XmiI	GTMKAC	1 cut(s)	180
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	2 cut(s)	248, 283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.