Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009602

Physical Location & Seq

Genomic Coordinates Forward (+)

20408535 .. 20411556

Gene Structure 3022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012600

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGGGTCATACAAGTGTGCTCTGCAGCTATGGAGGAGAAAGCAATCAGATTTAGTTGGGGTTTTGCCAAAGATTTCAAGGGCTTTCCACACCCAGAAGGCAACTTCAGATCAGCTACTGGGAATGGTGCAGTCTGGTGCTGCAAGGCAGTCTACTGCTCACTCAAGTCATTTGACCAGGCGCATAGTTGGAACTGATGGAATTTCGGTTCTGTCTGGAAGGAATTTTACTAGAGAATTAATCAATACTAAGTGGGCTCCATTACAACTTACGAGAAACTATGGAGCAAACAATGTTGTTCCTCGCTTTAGTAGAACCATGTCTTCAGAAGCTTCACAGAAACCGCGAAGAAATCAATCTGAGACTAAGAAAGACATATCCACTGTGGAGGAGCCTTTTGATGATGCTCCTACGTACAATATCCCTCAGAAGCCACTGACATTTGTTGAGGGGGCATCCTATAGTGTTGTCATTCTTATCGGGTTTGGAATTGCTGGCTTGGCAGCATATGCCGTTTTTAAGGAGCTTATTTTTGAACCAAAAGAGTACAAAATCTTTAACAAGGCGCTTAAACGGATTCAAGATGATGCTCAGGTTAGAATGAGGGTTGGATACCCTATTACAGGATATGGTCAAGAAAGTAGAAATCGTGCTGCTCGACAACGCATTCCAAACAGAATGTGGACTGATGAAGATGGTTTAGAGCATGTAGAGGTCAATTTCTATGTTCGTGGGCCGCACGGAGCTGGGAAAGTATTCGCTGAGATGTTCAAAGACGTAGACAAGAGGTGGAAATACACATATCTGGTTGTCGAGACAACATCACCTTCCCAATCACGTCTGATCCTAGAGTCCTATCTGCCGGAGTACAAGCCAGCCCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007275 GO:0008104 GO:0008150 GO:0008535 GO:0009791 GO:0009987 GO:0010257 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017004 GO:0017038 GO:0019866 GO:0022607 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032981 GO:0032991 GO:0033036 GO:0033108 GO:0033365 GO:0033617 GO:0034613 GO:0034622 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065003 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0090351 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIM21

Protein Analysis

295

Amino Acids

33.34

Weight (kDa)

9.78

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIM21	PF08294	151 - 283	4e-24	TIM21

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00026
fragaria_vesca	FvH4_7g06430
malus_domestica	MD05G1185000.v1.1 MD10G1173000.v1.1
prunus_persica	Prupe.8G211200_v2.0.a1 Prupe.8G211200_v2.0.a1
pyrus_communis	pycom05g16980 pycom10g14910
rosa_chinensis	RchiOBHm_Chr6g0285911
rosa_laevigata	RLG00000012600
rosa_multiflora	Rmu_co8342957.1_g000001 Rmu_co8417589.1_g000001 Rmu_sc0004808.1_g000002
rosa_roxburghii	Rroxscaffold_7G00182620
rosa_rugosa	Rorug06G0177500 Rorug06G0177500
rosa_samantha	Rh6AG289500 Rh6BG285600 Rh6BG291300 Rh6CG292300 Rh6DG284400
rosa_wichuraiana	Rw6G024940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	152, 780
AccII	CGCG	1 cut(s)	346
AciI	CCGC	2 cut(s)	344, 737
AclWI	GGATC	1 cut(s)	838
AcsI	RAATTY	2 cut(s)	201, 223
AcuI	CTGAAG	2 cut(s)	90, 309
AfaI	GTAC	3 cut(s)	416, 548, 869
AfiI	CCNNNNNNNGG	1 cut(s)	623
AgsI	TTSAA	4 cut(s)	78, 536, 581, 772
AjiI	CACGTC	1 cut(s)	839
AjnI	CCWGG	1 cut(s)	176
AloI	GAACNNNNNNTCC	2 cut(s)	192, 224
AluBI	AGCT	5 cut(s)	28, 115, 332, 526, 746
AluI	AGCT	5 cut(s)	28, 115, 332, 526, 746
Alw21I	GWGCWC	1 cut(s)	22
Alw26I	GTCTC	2 cut(s)	356, 809
AlwI	GGATC	1 cut(s)	838
AlwNI	CAGNNNCTG	1 cut(s)	118
AoxI	GGCC	1 cut(s)	734
ApeKI	GCWGC	4 cut(s)	25, 140, 503, 653
ApoI	RAATTY	2 cut(s)	201, 223
AseI	ATTAAT	1 cut(s)	239
Asp700I	GAANNNNTTC	1 cut(s)	755
AspLEI	GCGC	2 cut(s)	183, 568
AspS9I	GGNCC	1 cut(s)	734
AsuHPI	GGTGA	1 cut(s)	816
BanII	GRGCYC	1 cut(s)	259
BarI	GAAGNNNNNNTAC	2 cut(s)	211, 243
BbsI	GAAGAC	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	22
BbvI	GCAGC	4 cut(s)	37, 127, 515, 640
BccI	CCATC	2 cut(s)	191, 689
BceAI	ACGGC	1 cut(s)	497
BciT130I	CCWGG	1 cut(s)	178
BciVI	GTATCC	1 cut(s)	605
BcoDI	GTCTC	2 cut(s)	356, 809
BfaI	CTAG	3 cut(s)	231, 848, 883
BfmI	CTRYAG	2 cut(s)	23, 460
BfoI	RGCGCY	1 cut(s)	569
BfuI	GTATCC	1 cut(s)	605
BisI	GCNGC	5 cut(s)	26, 141, 504, 654, 737
BlsI	GCNGC	5 cut(s)	27, 142, 505, 655, 738
Bme1390I	CCNGG	1 cut(s)	178
BmgBI	CACGTC	1 cut(s)	839
BmgT120I	GGNCC	1 cut(s)	734
BmiI	GGNNCC	2 cut(s)	258, 393
BmrFI	CCNGG	1 cut(s)	178
BmrI	ACTGGG	1 cut(s)	128
BmsI	GCATC	3 cut(s)	394, 464, 577
BmuI	ACTGGG	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	315
Bpu10I	CCTNAGC	1 cut(s)	591
BpuEI	CTTGAG	1 cut(s)	148
BsaAI	YACGTR	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	1 cut(s)	623
Bse1I	ACTGG	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	178
BseGI	GGATG	1 cut(s)	455
BseLI	CCNNNNNNNGG	1 cut(s)	623
BseMII	CTCAG	4 cut(s)	351, 440, 605, 753
BseNI	ACTGG	1 cut(s)	123
BseRI	GAGGAG	2 cut(s)	49, 404
BseXI	GCAGC	4 cut(s)	37, 127, 515, 640
BseYI	CCCAGC	1 cut(s)	746
BsgI	GTGCAG	1 cut(s)	149
Bsh1236I	CGCG	1 cut(s)	346
BshFI	GGCC	1 cut(s)	736
BsiHKAI	GWGCWC	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	863
BslI	CCNNNNNNNGG	1 cut(s)	623
BsmAI	GTCTC	2 cut(s)	356, 809
BsmI	GAATGC	1 cut(s)	666
BsnI	GGCC	1 cut(s)	736
Bsp1286I	GDGCHC	2 cut(s)	22, 259
Bsp143I	GATC	2 cut(s)	109, 843
BspACI	CCGC	2 cut(s)	344, 737
BspANI	GGCC	1 cut(s)	736
BspCNI	CTCAG	4 cut(s)	352, 439, 604, 754
BspFNI	CGCG	1 cut(s)	346
BspLI	GGNNCC	2 cut(s)	258, 393
BspMAI	CTGCAG	1 cut(s)	27
BspPI	GGATC	1 cut(s)	838
BsrI	ACTGG	1 cut(s)	123
BssMI	GATC	2 cut(s)	109, 843
Bst2UI	CCWGG	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	385
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstBAI	YACGTR	1 cut(s)	414
BstC8I	GCNNGC	2 cut(s)	496, 876
BstDEI	CTNAG	6 cut(s)	249, 360, 366, 426, 591, 762
BstENI	CCTNNNNNAGG	1 cut(s)	621
BstF5I	GGATG	1 cut(s)	455
BstFNI	CGCG	1 cut(s)	346
BstH2I	RGCGCY	1 cut(s)	569
BstHHI	GCGC	2 cut(s)	183, 568
BstKTI	GATC	2 cut(s)	112, 846
BstMAI	GTCTC	2 cut(s)	356, 809
BstMBI	GATC	2 cut(s)	109, 843
BstMWI	GCNNNNNNNGC	2 cut(s)	500, 509
BstNI	CCWGG	1 cut(s)	178
BstNSI	RCATGY	1 cut(s)	710
BstSCI	CCNGG	1 cut(s)	176
BstSFI	CTRYAG	2 cut(s)	23, 460
BstSNI	TACGTA	1 cut(s)	414
BstUI	CGCG	1 cut(s)	346
BstV1I	GCAGC	4 cut(s)	37, 127, 515, 640
BstV2I	GAAGAC	1 cut(s)	315
BsuI	GTATCC	1 cut(s)	605
BsuRI	GGCC	1 cut(s)	736
BtrI	CACGTC	1 cut(s)	839
BtsCI	GGATG	1 cut(s)	455
BtsIMutI	CAGTG	2 cut(s)	381, 434
Cac8I	GCNNGC	2 cut(s)	496, 876
CaiI	CAGNNNCTG	1 cut(s)	118
CfoI	GCGC	2 cut(s)	183, 568
Cfr13I	GGNCC	1 cut(s)	734
Csp6I	GTAC	3 cut(s)	415, 547, 868
CviAII	CATG	2 cut(s)	319, 707
CviQI	GTAC	3 cut(s)	415, 547, 868
DdeI	CTNAG	6 cut(s)	249, 360, 366, 426, 591, 762
DpnI	GATC	2 cut(s)	111, 845
DpnII	GATC	2 cut(s)	109, 843
Eco105I	TACGTA	1 cut(s)	414
Eco24I	GRGCYC	1 cut(s)	259
Eco57I	CTGAAG	2 cut(s)	90, 309
EcoNI	CCTNNNNNAGG	1 cut(s)	621
EcoRII	CCWGG	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	259
FaeI	CATG	2 cut(s)	322, 710
FatI	CATG	2 cut(s)	318, 706
FauNDI	CATATG	1 cut(s)	508
FblI	GTMKAC	2 cut(s)	152, 780
Fnu4HI	GCNGC	5 cut(s)	26, 141, 504, 654, 737
FokI	GGATG	1 cut(s)	442
FriOI	GRGCYC	1 cut(s)	259
Fsp4HI	GCNGC	5 cut(s)	26, 141, 504, 654, 737
FspBI	CTAG	3 cut(s)	231, 848, 883
GlaI	GCGC	2 cut(s)	182, 567
GluI	GCNGC	5 cut(s)	26, 141, 504, 654, 737
GsaI	CCCAGC	1 cut(s)	750
HaeII	RGCGCY	1 cut(s)	569
HaeIII	GGCC	1 cut(s)	736
HapII	CCGG	1 cut(s)	863
HhaI	GCGC	2 cut(s)	183, 568
Hin1II	CATG	2 cut(s)	322, 710
Hin6I	GCGC	2 cut(s)	181, 566
HinP1I	GCGC	2 cut(s)	181, 566
HindIII	AAGCTT	1 cut(s)	330
HinfI	GANTC	2 cut(s)	577, 851
HpaII	CCGG	1 cut(s)	863
HphI	GGTGA	1 cut(s)	816
Hpy166II	GTNNAC	3 cut(s)	153, 684, 781
Hpy188I	TCNGA	6 cut(s)	49, 109, 328, 361, 429, 843
Hpy188III	TCNNGA	4 cut(s)	216, 581, 635, 814
Hpy8I	GTNNAC	3 cut(s)	153, 684, 781
HpyAV	CCTTC	3 cut(s)	91, 213, 837
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	3 cut(s)	413, 777, 838
HpyCH4V	TGCA	3 cut(s)	25, 130, 143
HpyF10VI	GCNNNNNNNGC	2 cut(s)	500, 509
HpyF3I	CTNAG	6 cut(s)	249, 360, 366, 426, 591, 762
HpySE526I	ACGT	3 cut(s)	413, 777, 838
Hsp92II	CATG	2 cut(s)	322, 710
HspAI	GCGC	2 cut(s)	181, 566
Kzo9I	GATC	2 cut(s)	109, 843
LmnI	GCTCC	6 cut(s)	262, 284, 391, 412, 523, 743
Lsp1109I	GCAGC	4 cut(s)	37, 127, 515, 640
LweI	GCATC	3 cut(s)	394, 464, 577
MaeI	CTAG	3 cut(s)	231, 848, 883
MaeII	ACGT	3 cut(s)	413, 777, 838
MalI	GATC	2 cut(s)	111, 845
MboI	GATC	2 cut(s)	109, 843
MboII	GAAGA	3 cut(s)	315, 360, 704
MhlI	GDGCHC	2 cut(s)	22, 259
MluCI	AATT	5 cut(s)	201, 223, 236, 489, 718
MlyI	GAGTC	1 cut(s)	860
MmeI	TCCRAC	2 cut(s)	169, 589
MnlI	CCTC	8 cut(s)	27, 312, 382, 435, 442, 597, 706, 780
MroXI	GAANNNNTTC	1 cut(s)	755
MseI	TTAA	4 cut(s)	239, 519, 558, 570
MslI	CAYNNNNRTG	1 cut(s)	13
MspI	CCGG	1 cut(s)	863
MspR9I	CCNGG	1 cut(s)	178
Mva1269I	GAATGC	1 cut(s)	666
MvaI	CCWGG	1 cut(s)	178
MvnI	CGCG	1 cut(s)	346
MwoI	GCNNNNNNNGC	2 cut(s)	500, 509
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	2 cut(s)	109, 843
NlaIII	CATG	2 cut(s)	322, 710
NlaIV	GGNNCC	2 cut(s)	258, 393
NspI	RCATGY	1 cut(s)	710
PcsI	WCGNNNNNNNCGW	1 cut(s)	655
PctI	GAATGC	1 cut(s)	666
PdmI	GAANNNNTTC	1 cut(s)	755
PfeI	GAWTC	1 cut(s)	577
PkrI	GCNGC	5 cut(s)	27, 142, 505, 655, 738
PleI	GAGTC	1 cut(s)	859
PpsI	GAGTC	1 cut(s)	859
Ppu21I	YACGTR	1 cut(s)	414
PshBI	ATTAAT	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	176
PspFI	CCCAGC	1 cut(s)	746
PspGI	CCWGG	1 cut(s)	176
PspN4I	GGNNCC	2 cut(s)	258, 393
PspPI	GGNCC	1 cut(s)	734
PstI	CTGCAG	1 cut(s)	27
PstNI	CAGNNNCTG	1 cut(s)	118
RsaI	GTAC	3 cut(s)	416, 548, 869
RsaNI	GTAC	3 cut(s)	415, 547, 868
RseI	CAYNNNNRTG	1 cut(s)	13
SaqAI	TTAA	4 cut(s)	239, 519, 558, 570
SatI	GCNGC	5 cut(s)	26, 141, 504, 654, 737
Sau3AI	GATC	2 cut(s)	109, 843
Sau96I	GGNCC	1 cut(s)	734
SchI	GAGTC	1 cut(s)	860
ScrFI	CCNGG	1 cut(s)	178
SduI	GDGCHC	2 cut(s)	22, 259
SfaNI	GCATC	3 cut(s)	394, 464, 577
SfcI	CTRYAG	2 cut(s)	23, 460
SmiMI	CAYNNNNRTG	1 cut(s)	13
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
SnaBI	TACGTA	1 cut(s)	414
Sse9I	AATT	5 cut(s)	201, 223, 236, 489, 718
SsiI	CCGC	2 cut(s)	344, 737
SspMI	CTAG	3 cut(s)	231, 848, 883
StyD4I	CCNGG	1 cut(s)	176
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	3 cut(s)	416, 780, 841
TaqI	TCGA	2 cut(s)	658, 813
TasI	AATT	5 cut(s)	201, 223, 236, 489, 718
TatI	WGTACW	2 cut(s)	546, 867
TauI	GCSGC	1 cut(s)	739
TfiI	GAWTC	1 cut(s)	577
Tru1I	TTAA	4 cut(s)	239, 519, 558, 570
Tru9I	TTAA	4 cut(s)	239, 519, 558, 570
TscAI	CASTG	2 cut(s)	388, 441
TseI	GCWGC	4 cut(s)	25, 140, 503, 653
TspDTI	ATGAA	1 cut(s)	705
TspGWI	ACGGA	2 cut(s)	589, 756
TspRI	CASTG	2 cut(s)	388, 441
VspI	ATTAAT	1 cut(s)	239
XagI	CCTNNNNNAGG	1 cut(s)	621
XapI	RAATTY	2 cut(s)	201, 223
XceI	RCATGY	1 cut(s)	710
XcmI	CCANNNNNNNNNTGG	1 cut(s)	678
XmiI	GTMKAC	2 cut(s)	152, 780
XmnI	GAANNNNTTC	1 cut(s)	755
XspI	CTAG	3 cut(s)	231, 848, 883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.