FvH4_7g08790

Proteasome subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0010269
Physical Location & Seq
Reverse (-)
8611328 .. 8614360
3033 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g08790.t1

Sequence Viewer

Length: 615 bp
ATGGAGTCAATCTTCGGTTTGGTTGGGAACGACTTCGCCATAGTGGCGGCGGACACGTCGGCAGTGCACAGCATACTGGTGCACAAGAGCAACGAGGACAAGATCATGGTCCTCGACTCCCACAAGCTCATCGCCGCCAGCGGTGAGCCCGGCGACAGGGTTCAGTTCACGGAGTACATCCAGAAGAACGTTTCGCTCTATCAGTTTCGTAATGGGATTCCTCTTACCACCTCCGCCGCTGCCAATTTCACCCGCGGTGAGCTCGCCACCGCCTTGCGCAAGAACCCATACCATGTGAACATTCTCATGGCTGGATATGATGAAGAGAAAGGCGCAGAACTGTACTACATTGATTACATTGCTTCCCTTCACAAGGTTGACAAGGGCGCCTTTGGTTATGGTTCCTATTTTGCTCTCTCCCTCATGGATCGACTCTATCACAAAGGTATGTCTGTTGATGAAGCCATTGCCTTAATTGACAAAATTATCATTGAGATACGATCAAGGCTTGTTGTGGCTCCACCCAACTTTGTCATCAAGATAGTGGACAAGGATGGAGCTAGGGAGTATGCGTGGCGTGAGTCTATCAAGGATGCTGGTGTGGCTGCTGCTTGA

Protein Analysis

205

Amino Acids

22.52

Weight (kDa)

5.86

Isoelectric Point (pI)

23.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 3 - 182 4.7e-41 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010269)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22630 AT4G14800 AT4G14800
fragaria_vesca FvH4_4g15960 FvH4_7g08790
malus_domestica MD13G1196600.v1.1 MD16G1197000.v1.1
prunus_persica Prupe.1G017400_v2.0.a1 Prupe.1G017400_v2.0.a1
pyrus_communis pycom01g08470 pycom16g16580
rosa_chinensis RchiOBHm_Chr4g0415561
rosa_laevigata RLG00000008063
rosa_multiflora Rmu_sc0004599.1_g000004
rosa_roxburghii Rroxscaffold_5G00359380
rosa_rugosa Rorug04G0134700
rosa_samantha Rh4AG196100 Rh4BG194800 Rh4CG206800 Rh4DG193600
rosa_wichuraiana Rw4G016670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 278
AccB1I GGYRCC 1 cut(s) 386
AccII CGCG 1 cut(s) 255
AciI CCGC 9 cut(s) 47, 50, 135, 141, 234, 237, 253, 255, 270
AclI AACGTT 1 cut(s) 189
AclWI GGATC 1 cut(s) 435
AcyI GRCGYC 1 cut(s) 387
AfaI GTAC 2 cut(s) 176, 344
AfiI CCNNNNNNNGG 2 cut(s) 156, 373
AflIII ACRYGT 1 cut(s) 54
AjiI CACGTC 1 cut(s) 57
AluBI AGCT 3 cut(s) 127, 262, 560
AluI AGCT 3 cut(s) 127, 262, 560
Alw21I GWGCWC 3 cut(s) 69, 84, 264
Alw44I GTGCAC 2 cut(s) 65, 80
AlwI GGATC 1 cut(s) 435
ApaLI GTGCAC 2 cut(s) 65, 80
ApeKI GCWGC 3 cut(s) 239, 605, 608
Asp700I GAANNNNTTC 1 cut(s) 32
AspLEI GCGC 3 cut(s) 279, 335, 389
AspS9I GGNCC 1 cut(s) 109
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 3 cut(s) 155, 241, 269
AvaII GGWCC 1 cut(s) 109
BaeGI GKGCMC 2 cut(s) 69, 84
BanI GGYRCC 1 cut(s) 386
BanII GRGCYC 2 cut(s) 150, 264
Bbv12I GWGCWC 3 cut(s) 69, 84, 264
BbvI GCAGC 3 cut(s) 226, 592, 595
BccI CCATC 1 cut(s) 548
BcnI CCSGG 1 cut(s) 150
BfaI CTAG 1 cut(s) 561
BfoI RGCGCY 1 cut(s) 390
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 6 cut(s) 48, 135, 237, 240, 606, 609
BlsI GCNGC 6 cut(s) 49, 136, 238, 241, 607, 610
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 109
BmgBI CACGTC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 3 cut(s) 388, 403, 519
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 583
BpuMI CCSGG 1 cut(s) 150
BsaHI GRCGYC 1 cut(s) 387
BsaJI CCNNGG 1 cut(s) 253
BsaXI ACNNNNNCTCC 2 cut(s) 557, 587
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 373
Bse1I ACTGG 1 cut(s) 81
Bse3DI GCAATG 2 cut(s) 357, 465
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 3 cut(s) 177, 559, 598
BseLI CCNNNNNNNGG 2 cut(s) 156, 373
BseMI GCAATG 2 cut(s) 357, 465
BseNI ACTGG 1 cut(s) 81
BseSI GKGCMC 2 cut(s) 69, 84
BseXI GCAGC 3 cut(s) 226, 592, 595
Bsh1236I CGCG 1 cut(s) 255
BshNI GGYRCC 1 cut(s) 386
BsiHKAI GWGCWC 3 cut(s) 69, 84, 264
BsiSI CCGG 1 cut(s) 150
BslI CCNNNNNNNGG 2 cut(s) 156, 373
Bsp1286I GDGCHC 4 cut(s) 69, 84, 150, 264
Bsp143I GATC 3 cut(s) 102, 427, 500
BspACI CCGC 9 cut(s) 47, 50, 135, 141, 234, 237, 253, 255, 270
BspFNI CGCG 1 cut(s) 255
BspLI GGNNCC 3 cut(s) 388, 403, 519
BspPI GGATC 1 cut(s) 435
BspT107I GGYRCC 1 cut(s) 386
BsrDI GCAATG 2 cut(s) 357, 465
BsrI ACTGG 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 3 cut(s) 102, 427, 500
BssNI GRCGYC 1 cut(s) 387
Bst4CI ACNGT 1 cut(s) 342
Bst6I CTCTTC 1 cut(s) 318
BstACI GRCGYC 1 cut(s) 387
BstC8I GCNNGC 2 cut(s) 139, 264
BstDSI CCRYGG 1 cut(s) 253
BstENI CCTNNNNNAGG 1 cut(s) 371
BstF5I GGATG 3 cut(s) 177, 559, 598
BstFNI CGCG 1 cut(s) 255
BstH2I RGCGCY 1 cut(s) 390
BstHHI GCGC 3 cut(s) 279, 335, 389
BstKTI GATC 3 cut(s) 105, 430, 503
BstMBI GATC 3 cut(s) 102, 427, 500
BstMWI GCNNNNNNNGC 2 cut(s) 44, 602
BstSCI CCNGG 1 cut(s) 148
BstSLI GKGCMC 2 cut(s) 69, 84
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 3 cut(s) 226, 592, 595
BtgI CCRYGG 1 cut(s) 253
BtgZI GCGATG 1 cut(s) 115
BtrI CACGTC 1 cut(s) 57
BtsCI GGATG 3 cut(s) 177, 559, 598
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 2 cut(s) 139, 264
CfoI GCGC 3 cut(s) 279, 335, 389
Cfr13I GGNCC 1 cut(s) 109
Cfr42I CCGCGG 1 cut(s) 256
Csp6I GTAC 2 cut(s) 175, 343
CviAII CATG 4 cut(s) 106, 293, 307, 424
CviJI RGCY 9 cut(s) 127, 148, 262, 311, 464, 508, 518, 560, 605
CviKI_1 RGCY 9 cut(s) 127, 148, 262, 311, 464, 508, 518, 560, 605
CviQI GTAC 2 cut(s) 175, 343
DinI GGCGCC 1 cut(s) 388
DpnI GATC 3 cut(s) 104, 429, 502
DpnII GATC 3 cut(s) 102, 427, 500
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
EciI GGCGGA 2 cut(s) 65, 223
Ecl136II GAGCTC 1 cut(s) 262
Eco24I GRGCYC 2 cut(s) 150, 264
Eco47I GGWCC 1 cut(s) 109
Eco53kI GAGCTC 1 cut(s) 262
EcoICRI GAGCTC 1 cut(s) 262
EcoNI CCTNNNNNAGG 1 cut(s) 371
EcoT38I GRGCYC 2 cut(s) 150, 264
EgeI GGCGCC 1 cut(s) 388
EheI GGCGCC 1 cut(s) 388
FaeI CATG 4 cut(s) 109, 296, 310, 427
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FatI CATG 4 cut(s) 105, 292, 306, 423
FauI CCCGC 1 cut(s) 260
Fnu4HI GCNGC 6 cut(s) 48, 135, 237, 240, 606, 609
FokI GGATG 3 cut(s) 164, 566, 605
FriOI GRGCYC 2 cut(s) 150, 264
Fsp4HI GCNGC 6 cut(s) 48, 135, 237, 240, 606, 609
FspBI CTAG 1 cut(s) 561
FspI TGCGCA 1 cut(s) 278
GlaI GCGC 3 cut(s) 278, 334, 388
GluI GCNGC 6 cut(s) 48, 135, 237, 240, 606, 609
HaeII RGCGCY 1 cut(s) 390
HapII CCGG 1 cut(s) 150
HhaI GCGC 3 cut(s) 279, 335, 389
Hin1I GRCGYC 1 cut(s) 387
Hin1II CATG 4 cut(s) 109, 296, 310, 427
Hin6I GCGC 3 cut(s) 277, 333, 387
HinP1I GCGC 3 cut(s) 277, 333, 387
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 5 cut(s) 5, 116, 217, 432, 581
HpaII CCGG 1 cut(s) 150
HphI GGTGA 3 cut(s) 155, 241, 269
Hpy166II GTNNAC 6 cut(s) 67, 82, 168, 298, 379, 547
Hpy188III TCNNGA 2 cut(s) 181, 538
Hpy8I GTNNAC 6 cut(s) 67, 82, 168, 298, 379, 547
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 1 cut(s) 377
HpyCH4III ACNGT 1 cut(s) 342
HpyCH4IV ACGT 2 cut(s) 56, 189
HpyCH4V TGCA 2 cut(s) 67, 82
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 602
HpySE526I ACGT 2 cut(s) 56, 189
Hsp92I GRCGYC 1 cut(s) 387
Hsp92II CATG 4 cut(s) 109, 296, 310, 427
HspAI GCGC 3 cut(s) 277, 333, 387
KasI GGCGCC 1 cut(s) 386
KspI CCGCGG 1 cut(s) 256
Kzo9I GATC 3 cut(s) 102, 427, 500
LmnI GCTCC 2 cut(s) 523, 557
LpnPI CCDG 7 cut(s) 62, 142, 151, 163, 194, 297, 582
Lsp1109I GCAGC 3 cut(s) 226, 592, 595
LweI GCATC 1 cut(s) 583
MaeI CTAG 1 cut(s) 561
MaeII ACGT 2 cut(s) 56, 189
MalI GATC 3 cut(s) 104, 429, 502
MboI GATC 3 cut(s) 102, 427, 500
MboII GAAGA 3 cut(s) 4, 196, 335
MhlI GDGCHC 4 cut(s) 69, 84, 150, 264
MluCI AATT 3 cut(s) 244, 474, 483
Mly113I GGCGCC 1 cut(s) 387
MlyI GAGTC 4 cut(s) 14, 110, 426, 590
MnlI CCTC 5 cut(s) 88, 122, 231, 241, 431
MroXI GAANNNNTTC 1 cut(s) 32
MseI TTAA 1 cut(s) 473
MslI CAYNNNNRTG 2 cut(s) 77, 305
MspA1I CMGCKG 3 cut(s) 141, 239, 255
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 1 cut(s) 150
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 2 cut(s) 44, 602
NarI GGCGCC 1 cut(s) 387
NciI CCSGG 1 cut(s) 150
NdeII GATC 3 cut(s) 102, 427, 500
NlaIII CATG 4 cut(s) 109, 296, 310, 427
NlaIV GGNNCC 3 cut(s) 388, 403, 519
NsbI TGCGCA 1 cut(s) 278
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 1 cut(s) 217
PkrI GCNGC 6 cut(s) 49, 136, 238, 241, 607, 610
PleI GAGTC 4 cut(s) 13, 110, 426, 589
PluTI GGCGCC 1 cut(s) 390
PpsI GAGTC 4 cut(s) 13, 110, 426, 589
Psp124BI GAGCTC 1 cut(s) 264
Psp1406I AACGTT 1 cut(s) 189
PspN4I GGNNCC 3 cut(s) 388, 403, 519
PspPI GGNCC 1 cut(s) 109
RsaI GTAC 2 cut(s) 176, 344
RsaNI GTAC 2 cut(s) 175, 343
RseI CAYNNNNRTG 2 cut(s) 77, 305
SacI GAGCTC 1 cut(s) 264
SacII CCGCGG 1 cut(s) 256
SaqAI TTAA 1 cut(s) 473
SatI GCNGC 6 cut(s) 48, 135, 237, 240, 606, 609
Sau3AI GATC 3 cut(s) 102, 427, 500
Sau96I GGNCC 1 cut(s) 109
SchI GAGTC 4 cut(s) 14, 110, 426, 590
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 4 cut(s) 69, 84, 150, 264
SetI ASST 8 cut(s) 59, 129, 192, 233, 264, 378, 448, 562
SfaNI GCATC 1 cut(s) 583
SfoI GGCGCC 1 cut(s) 388
Sfr303I CCGCGG 1 cut(s) 256
SgrBI CCGCGG 1 cut(s) 256
SinI GGWCC 1 cut(s) 109
SmiMI CAYNNNNRTG 2 cut(s) 77, 305
Sse9I AATT 3 cut(s) 244, 474, 483
SsiI CCGC 9 cut(s) 47, 50, 135, 141, 234, 237, 253, 255, 270
SspDI GGCGCC 1 cut(s) 386
SspMI CTAG 1 cut(s) 561
SstI GAGCTC 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 342
TaiI ACGT 2 cut(s) 59, 192
TaqI TCGA 2 cut(s) 114, 430
TasI AATT 3 cut(s) 244, 474, 483
TatI WGTACW 2 cut(s) 174, 342
TauI GCSGC 3 cut(s) 50, 137, 239
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 1 cut(s) 473
Tru9I TTAA 1 cut(s) 473
TscAI CASTG 1 cut(s) 69
TseI GCWGC 3 cut(s) 239, 605, 608
TspDTI ATGAA 2 cut(s) 336, 474
TspGWI ACGGA 1 cut(s) 185
TspRI CASTG 1 cut(s) 69
VneI GTGCAC 2 cut(s) 65, 80
VpaK11BI GGWCC 1 cut(s) 109
XagI CCTNNNNNAGG 1 cut(s) 371
XmnI GAANNNNTTC 1 cut(s) 32
XspI CTAG 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.