pycom01g08470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0010269
Physical Location & Seq
Reverse (-)
9383416 .. 9383793
378 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g08470.1

Sequence Viewer

Length: 378 bp
ATGGCTTCGTCGTCTTGCAAAACATACAAAATTATGGTGCTCGACACCCAAAAGCTCATCGTAGCCAGTGGCGTGTCCGCTAACAAGGTTCAGTTCACGAAATACATAAAGAAGACTACCATCGTCGATCTGAGTCAGATTGGAGCCTCGCGCCATCGTCGTCGATCGGAGTCAAGAGACAAAGACCTTGATTTGGGATTGGAAGAGATGAGCAAGAGAGACGGGGACCACCAACTTCACCGATTCACCATTGGTGGTTCAGCTGTTGGTGTGGGTAGCTTCCAACCCGTCGATTTCGTTGGCAGTGGGAGCAATTTGGAACCGTGGAACGTTCTGGAGCTCTGTATCAAAACCAAAAAAGAAAAAGAAAAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.87

Weight (kDa)

9.45

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010269)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22630 AT4G14800 AT4G14800
fragaria_vesca FvH4_4g15960 FvH4_7g08790
malus_domestica MD13G1196600.v1.1 MD16G1197000.v1.1
prunus_persica Prupe.1G017400_v2.0.a1 Prupe.1G017400_v2.0.a1
pyrus_communis pycom01g08470 pycom16g16580
rosa_chinensis RchiOBHm_Chr4g0415561
rosa_laevigata RLG00000008063
rosa_multiflora Rmu_sc0004599.1_g000004
rosa_roxburghii Rroxscaffold_5G00359380
rosa_rugosa Rorug04G0134700
rosa_samantha Rh4AG196100 Rh4BG194800 Rh4CG206800 Rh4DG193600
rosa_wichuraiana Rw4G016670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 151
AciI CCGC 1 cut(s) 78
AclI AACGTT 1 cut(s) 330
AfiI CCNNNNNNNGG 1 cut(s) 193
AluBI AGCT 4 cut(s) 55, 263, 279, 340
AluI AGCT 4 cut(s) 55, 263, 279, 340
Alw21I GWGCWC 2 cut(s) 42, 342
Alw26I GTCTC 2 cut(s) 171, 213
AspLEI GCGC 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 226
AsuHPI GGTGA 2 cut(s) 230, 238
AvaII GGWCC 1 cut(s) 226
BanII GRGCYC 1 cut(s) 342
BbsI GAAGAC 1 cut(s) 119
Bbv12I GWGCWC 2 cut(s) 42, 342
BccI CCATC 2 cut(s) 128, 162
BcoDI GTCTC 2 cut(s) 171, 213
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 3 cut(s) 145, 227, 321
BpiI GAAGAC 1 cut(s) 119
BpmI CTGGAG 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 323
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 323
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 1 cut(s) 66
Bsh1236I CGCG 1 cut(s) 151
Bsh1285I CGRYCG 1 cut(s) 167
BsiEI CGRYCG 1 cut(s) 167
BsiHKAI GWGCWC 2 cut(s) 42, 342
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 2 cut(s) 171, 213
BsmBI CGTCTC 1 cut(s) 213
BsmFI GGGAC 1 cut(s) 239
Bsp1286I GDGCHC 2 cut(s) 42, 342
Bsp143I GATC 2 cut(s) 127, 164
BspACI CCGC 1 cut(s) 78
BspCNI CTCAG 1 cut(s) 123
BspFNI CGCG 1 cut(s) 151
BspLI GGNNCC 3 cut(s) 145, 227, 321
BsrI ACTGG 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 323
BssMI GATC 2 cut(s) 127, 164
Bst4CI ACNGT 1 cut(s) 324
Bst6I CTCTTC 1 cut(s) 198
BstDEI CTNAG 1 cut(s) 131
BstDSI CCRYGG 1 cut(s) 323
BstFNI CGCG 1 cut(s) 151
BstHHI GCGC 1 cut(s) 153
BstKTI GATC 2 cut(s) 130, 167
BstMAI GTCTC 2 cut(s) 171, 213
BstMBI GATC 2 cut(s) 127, 164
BstMCI CGRYCG 1 cut(s) 167
BstMWI GCNNNNNNNGC 1 cut(s) 309
BstUI CGCG 1 cut(s) 151
BstV2I GAAGAC 1 cut(s) 119
BtgI CCRYGG 1 cut(s) 323
BtsI GCAGTG 1 cut(s) 310
BtsIMutI CAGTG 2 cut(s) 73, 310
CfoI GCGC 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 226
CviJI RGCY 7 cut(s) 5, 55, 65, 146, 263, 279, 340
CviKI_1 RGCY 7 cut(s) 5, 55, 65, 146, 263, 279, 340
DdeI CTNAG 1 cut(s) 131
DpnI GATC 2 cut(s) 129, 166
DpnII GATC 2 cut(s) 127, 164
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Ecl136II GAGCTC 1 cut(s) 340
Eco24I GRGCYC 1 cut(s) 342
Eco47I GGWCC 1 cut(s) 226
Eco53kI GAGCTC 1 cut(s) 340
EcoICRI GAGCTC 1 cut(s) 340
EcoT38I GRGCYC 1 cut(s) 342
Esp3I CGTCTC 1 cut(s) 213
FaiI YATR 3 cut(s) 25, 35, 107
FaqI GGGAC 1 cut(s) 239
FriOI GRGCYC 1 cut(s) 342
GlaI GCGC 1 cut(s) 152
GsuI CTGGAG 1 cut(s) 356
HhaI GCGC 1 cut(s) 153
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HinfI GANTC 3 cut(s) 133, 170, 243
HphI GGTGA 2 cut(s) 230, 238
Hpy166II GTNNAC 1 cut(s) 96
Hpy188I TCNGA 3 cut(s) 132, 138, 169
Hpy188III TCNNGA 3 cut(s) 97, 174, 335
Hpy8I GTNNAC 1 cut(s) 96
Hpy99I CGWCG 5 cut(s) 13, 128, 162, 165, 293
HpyCH4III ACNGT 1 cut(s) 324
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 1 cut(s) 18
HpyF10VI GCNNNNNNNGC 1 cut(s) 309
HpyF3I CTNAG 1 cut(s) 131
HpySE526I ACGT 1 cut(s) 330
HspAI GCGC 1 cut(s) 151
Kzo9I GATC 2 cut(s) 127, 164
LmnI GCTCC 3 cut(s) 143, 309, 337
LpnPI CCDG 2 cut(s) 79, 320
MaeII ACGT 1 cut(s) 330
MalI GATC 2 cut(s) 129, 166
MboI GATC 2 cut(s) 127, 164
MboII GAAGA 2 cut(s) 124, 215
MhlI GDGCHC 2 cut(s) 42, 342
MluCI AATT 2 cut(s) 30, 313
MlyI GAGTC 2 cut(s) 142, 179
MmeI TCCRAC 1 cut(s) 307
MnlI CCTC 1 cut(s) 157
MseI TTAA 1 cut(s) 376
MspA1I CMGCKG 1 cut(s) 263
MvnI CGCG 1 cut(s) 151
MwoI GCNNNNNNNGC 1 cut(s) 309
NdeII GATC 2 cut(s) 127, 164
NlaIV GGNNCC 3 cut(s) 145, 227, 321
PfeI GAWTC 1 cut(s) 243
Ple19I CGATCG 1 cut(s) 167
PleI GAGTC 2 cut(s) 141, 178
PpsI GAGTC 2 cut(s) 141, 178
Psp124BI GAGCTC 1 cut(s) 342
Psp1406I AACGTT 1 cut(s) 330
PspN4I GGNNCC 3 cut(s) 145, 227, 321
PspPI GGNCC 1 cut(s) 226
PvuI CGATCG 1 cut(s) 167
PvuII CAGCTG 1 cut(s) 263
SacI GAGCTC 1 cut(s) 342
SaqAI TTAA 1 cut(s) 376
Sau3AI GATC 2 cut(s) 127, 164
Sau96I GGNCC 1 cut(s) 226
SchI GAGTC 2 cut(s) 142, 179
SduI GDGCHC 2 cut(s) 42, 342
SetI ASST 7 cut(s) 57, 90, 189, 265, 281, 333, 342
SinI GGWCC 1 cut(s) 226
Sse9I AATT 2 cut(s) 30, 313
SsiI CCGC 1 cut(s) 78
SstI GAGCTC 1 cut(s) 342
TaaI ACNGT 1 cut(s) 324
TaiI ACGT 1 cut(s) 333
TaqI TCGA 4 cut(s) 42, 126, 163, 291
TasI AATT 2 cut(s) 30, 313
TfiI GAWTC 1 cut(s) 243
Tru1I TTAA 1 cut(s) 376
Tru9I TTAA 1 cut(s) 376
TscAI CASTG 2 cut(s) 73, 310
TspRI CASTG 2 cut(s) 73, 310
VpaK11BI GGWCC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.