Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0010269

Physical Location & Seq

Genomic Coordinates Forward (+)

39600403 .. 39605427

Gene Structure 5025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00359380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCCACCACAAGTGCGACAATTTCCTCCCCGTTAAGCCCTCTATCATGGTTGACGTCAAATTGGTATAAAATCCTCTTGACCTTCTCTGATTTGCTCCCTGTCATCGCCATTATACCTTGCCCCCCAAAACGACTTGTTGCTCAAGTCCCCTTTGCCCTTTTTACAGACTCCAGTGTTCCTCAAGCTCAATCACAAAGACAGAGATCAAAACCTAGCAACTCAAAAGAGAAGAAGAAGGAGATGGAGTCTATCTTCGGCTTGGTTGGGAACGATTTCGCCATAGTGGCGGCGGACACGTCGGCGGTGCACAGCATACTGGTGCACAAGTCCAACGAGGACAAGATCATGGTGCTCGACTCCCACAAGCTAATCGCCGCCAGCGGTGAGCCCGGAGACAGGGTTCAGTTCACGGAGTACATCCAGAAAAACGTGTCGCTGTATCAGTTTCGCAATGGGATTCCTCTGACCACAGCCGCCGCTGCTAATTTCACCCGCGGTGAGCTCGCCACCGCCTTGCGTAAGAACCCATACCATGTGAACATTCTCATGGCTGGATATGATAAAGAGAAGGGGGCAGAATTGTACTACATTGATTACATTGCTTCCCTCCACAAGGTTGAAAAGGGCGCCTTTGGTTACGGGTCCTATTTTGCTCTCTCCCTTATGGATCGACTCTATCACAAAGGTATGTCTGTTGAAGAAGCCATTGCCTTAGTTGACAAGATCATTATTGAGATCCGATCGAGGCTCGTCGTTGCTCCACCTAACTTTGTCATCAAGATAGTGGACAAGGATGGAGCTAGGGAGTATGCGTGGCGTGAGTCCATCAAGGATGCTGGTGTGGCTGGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005839 GO:0005886 GO:0016020 GO:0019774 GO:0031090 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944 GO:0098588 GO:0098805 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

285

Amino Acids

31.46

Weight (kDa)

8.92

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	84 - 263	2.4e-40	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22630 AT4G14800 AT4G14800
fragaria_vesca	FvH4_4g15960 FvH4_7g08790
malus_domestica	MD13G1196600.v1.1 MD16G1197000.v1.1
prunus_persica	Prupe.1G017400_v2.0.a1 Prupe.1G017400_v2.0.a1
pyrus_communis	pycom01g08470 pycom16g16580
rosa_chinensis	RchiOBHm_Chr4g0415561
rosa_laevigata	RLG00000008063
rosa_multiflora	Rmu_sc0004599.1_g000004
rosa_roxburghii	Rroxscaffold_5G00359380
rosa_rugosa	Rorug04G0134700
rosa_samantha	Rh4AG196100 Rh4BG194800 Rh4CG206800 Rh4DG193600
rosa_wichuraiana	Rw4G016670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	629
AccII	CGCG	1 cut(s)	498
AclWI	GGATC	2 cut(s)	678, 733
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	2 cut(s)	56, 630
AfaI	GTAC	2 cut(s)	419, 587
AfiI	CCNNNNNNNGG	2 cut(s)	399, 616
AflIII	ACRYGT	2 cut(s)	297, 432
AgsI	TTSAA	2 cut(s)	623, 701
AjiI	CACGTC	1 cut(s)	300
AloI	GAACNNNNNNTCC	2 cut(s)	387, 419
AluBI	AGCT	4 cut(s)	188, 370, 505, 803
AluI	AGCT	4 cut(s)	188, 370, 505, 803
Alw21I	GWGCWC	4 cut(s)	312, 327, 357, 507
Alw26I	GTCTC	1 cut(s)	390
Alw44I	GTGCAC	2 cut(s)	308, 323
AlwI	GGATC	2 cut(s)	678, 733
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	2 cut(s)	308, 323
ApeKI	GCWGC	1 cut(s)	482
Asp700I	GAANNNNTTC	1 cut(s)	275
AspLEI	GCGC	1 cut(s)	632
AspS9I	GGNCC	1 cut(s)	645
AsuC2I	CCSGG	1 cut(s)	393
AsuHPI	GGTGA	3 cut(s)	398, 484, 512
AvaII	GGWCC	1 cut(s)	645
BaeGI	GKGCMC	2 cut(s)	312, 327
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	629
BanII	GRGCYC	2 cut(s)	393, 507
Bbv12I	GWGCWC	4 cut(s)	312, 327, 357, 507
BbvI	GCAGC	1 cut(s)	469
BccI	CCATC	3 cut(s)	238, 791, 836
BcnI	CCSGG	1 cut(s)	393
BcoDI	GTCTC	1 cut(s)	390
BfaI	CTAG	2 cut(s)	216, 804
BfoI	RGCGCY	1 cut(s)	633
BglI	GCCNNNNNGGC	1 cut(s)	287
BisI	GCNGC	5 cut(s)	291, 378, 477, 480, 483
BlsI	GCNGC	5 cut(s)	292, 379, 478, 481, 484
Bme1390I	CCNGG	1 cut(s)	393
Bme18I	GGWCC	1 cut(s)	645
BmgBI	CACGTC	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	645
BmiI	GGNNCC	2 cut(s)	631, 646
BmrFI	CCNGG	1 cut(s)	393
BmsI	GCATC	1 cut(s)	826
BpmI	CTGGAG	1 cut(s)	157
BpuEI	CTTGAG	2 cut(s)	129, 168
BpuMI	CCSGG	1 cut(s)	393
BsaHI	GRCGYC	2 cut(s)	56, 630
BsaJI	CCNNGG	1 cut(s)	496
BsaXI	ACNNNNNCTCC	6 cut(s)	233, 263, 387, 417, 800, 830
Bsc4I	CCNNNNNNNGG	2 cut(s)	399, 616
Bse1I	ACTGG	2 cut(s)	174, 324
Bse3DI	GCAATG	3 cut(s)	460, 600, 708
BseDI	CCNNGG	1 cut(s)	496
BseGI	GGATG	3 cut(s)	420, 802, 841
BseLI	CCNNNNNNNGG	2 cut(s)	399, 616
BseMI	GCAATG	3 cut(s)	460, 600, 708
BseNI	ACTGG	2 cut(s)	174, 324
BseSI	GKGCMC	2 cut(s)	312, 327
BseXI	GCAGC	1 cut(s)	469
Bsh1236I	CGCG	1 cut(s)	498
Bsh1285I	CGRYCG	1 cut(s)	746
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	629
BsiEI	CGRYCG	1 cut(s)	746
BsiHKAI	GWGCWC	4 cut(s)	312, 327, 357, 507
BsiSI	CCGG	1 cut(s)	393
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	2 cut(s)	399, 616
BsmAI	GTCTC	1 cut(s)	390
BsmFI	GGGAC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	5 cut(s)	312, 327, 357, 393, 507
Bsp143I	GATC	6 cut(s)	206, 345, 670, 726, 738, 743
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	498
BspLI	GGNNCC	2 cut(s)	631, 646
BspPI	GGATC	2 cut(s)	678, 733
BspT107I	GGYRCC	1 cut(s)	629
BsrDI	GCAATG	3 cut(s)	460, 600, 708
BsrI	ACTGG	2 cut(s)	174, 324
BssECI	CCNNGG	1 cut(s)	496
BssMI	GATC	6 cut(s)	206, 345, 670, 726, 738, 743
BssNI	GRCGYC	2 cut(s)	56, 630
BstACI	GRCGYC	2 cut(s)	56, 630
BstC8I	GCNNGC	2 cut(s)	382, 507
BstDEI	CTNAG	1 cut(s)	715
BstDSI	CCRYGG	1 cut(s)	496
BstENI	CCTNNNNNAGG	1 cut(s)	614
BstF5I	GGATG	3 cut(s)	420, 802, 841
BstFNI	CGCG	1 cut(s)	498
BstH2I	RGCGCY	1 cut(s)	633
BstHHI	GCGC	1 cut(s)	632
BstKTI	GATC	6 cut(s)	209, 348, 673, 729, 741, 746
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	6 cut(s)	206, 345, 670, 726, 738, 743
BstMCI	CGRYCG	1 cut(s)	746
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 482, 845
BstSCI	CCNGG	1 cut(s)	391
BstSLI	GKGCMC	2 cut(s)	312, 327
BstUI	CGCG	1 cut(s)	498
BstV1I	GCAGC	1 cut(s)	469
BstX2I	RGATCY	1 cut(s)	738
BstYI	RGATCY	1 cut(s)	738
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	496
BtgZI	GCGATG	1 cut(s)	91
BtrI	CACGTC	1 cut(s)	300
BtsCI	GGATG	3 cut(s)	420, 802, 841
BtsIMutI	CAGTG	1 cut(s)	181
Cac8I	GCNNGC	2 cut(s)	382, 507
CfoI	GCGC	1 cut(s)	632
Cfr13I	GGNCC	1 cut(s)	645
Cfr42I	CCGCGG	1 cut(s)	499
Csp6I	GTAC	2 cut(s)	418, 586
CviAII	CATG	4 cut(s)	48, 349, 536, 550
CviQI	GTAC	2 cut(s)	418, 586
DdeI	CTNAG	1 cut(s)	715
DinI	GGCGCC	1 cut(s)	631
DpnI	GATC	6 cut(s)	208, 347, 672, 728, 740, 745
DpnII	GATC	6 cut(s)	206, 345, 670, 726, 738, 743
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	308
Ecl136II	GAGCTC	1 cut(s)	505
Eco24I	GRGCYC	2 cut(s)	393, 507
Eco47I	GGWCC	1 cut(s)	645
Eco53kI	GAGCTC	1 cut(s)	505
EcoICRI	GAGCTC	1 cut(s)	505
EcoNI	CCTNNNNNAGG	1 cut(s)	614
EcoO109I	RGGNCCY	1 cut(s)	645
EcoT38I	GRGCYC	2 cut(s)	393, 507
EgeI	GGCGCC	1 cut(s)	631
EheI	GGCGCC	1 cut(s)	631
FaeI	CATG	4 cut(s)	51, 352, 539, 553
FalI	AAGNNNNNCTT	2 cut(s)	617, 649
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	4 cut(s)	47, 348, 535, 549
FauI	CCCGC	1 cut(s)	503
Fnu4HI	GCNGC	5 cut(s)	291, 378, 477, 480, 483
FokI	GGATG	3 cut(s)	407, 809, 848
FriOI	GRGCYC	2 cut(s)	393, 507
Fsp4HI	GCNGC	5 cut(s)	291, 378, 477, 480, 483
FspBI	CTAG	2 cut(s)	216, 804
GlaI	GCGC	1 cut(s)	631
GluI	GCNGC	5 cut(s)	291, 378, 477, 480, 483
GsuI	CTGGAG	1 cut(s)	157
HaeII	RGCGCY	1 cut(s)	633
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	393
HhaI	GCGC	1 cut(s)	632
Hin1I	GRCGYC	2 cut(s)	56, 630
Hin1II	CATG	4 cut(s)	51, 352, 539, 553
Hin6I	GCGC	1 cut(s)	630
HinP1I	GCGC	1 cut(s)	630
HincII	GTYRAC	2 cut(s)	54, 721
HindII	GTYRAC	2 cut(s)	54, 721
HinfI	GANTC	6 cut(s)	170, 248, 359, 460, 675, 824
HpaII	CCGG	1 cut(s)	393
HphI	GGTGA	3 cut(s)	398, 484, 512
Hpy166II	GTNNAC	7 cut(s)	54, 310, 325, 411, 541, 721, 790
Hpy188I	TCNGA	3 cut(s)	91, 468, 743
Hpy188III	TCNNGA	3 cut(s)	79, 424, 781
Hpy8I	GTNNAC	7 cut(s)	54, 310, 325, 411, 541, 721, 790
Hpy99I	CGWCG	2 cut(s)	304, 758
HpyAV	CCTTC	3 cut(s)	94, 232, 565
HpyCH4IV	ACGT	3 cut(s)	56, 299, 432
HpyCH4V	TGCA	2 cut(s)	310, 325
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 482, 845
HpyF3I	CTNAG	1 cut(s)	715
HpySE526I	ACGT	3 cut(s)	56, 299, 432
Hsp92I	GRCGYC	2 cut(s)	56, 630
Hsp92II	CATG	4 cut(s)	51, 352, 539, 553
HspAI	GCGC	1 cut(s)	630
KasI	GGCGCC	1 cut(s)	629
KspI	CCGCGG	1 cut(s)	499
Kzo9I	GATC	6 cut(s)	206, 345, 670, 726, 738, 743
LmnI	GCTCC	3 cut(s)	102, 766, 800
Lsp1109I	GCAGC	1 cut(s)	469
LweI	GCATC	1 cut(s)	826
MaeI	CTAG	2 cut(s)	216, 804
MaeII	ACGT	3 cut(s)	56, 299, 432
MaeIII	GTNAC	1 cut(s)	638
MalI	GATC	6 cut(s)	208, 347, 672, 728, 740, 745
MboI	GATC	6 cut(s)	206, 345, 670, 726, 738, 743
MboII	GAAGA	4 cut(s)	244, 247, 247, 713
MflI	RGATCY	1 cut(s)	738
MhlI	GDGCHC	5 cut(s)	312, 327, 357, 393, 507
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	21, 61, 487, 581
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	630
MlyI	GAGTC	5 cut(s)	164, 257, 353, 669, 833
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	8 cut(s)	37, 51, 86, 192, 331, 474, 620, 741
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	35
MslI	CAYNNNNRTG	2 cut(s)	320, 548
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	3 cut(s)	384, 482, 498
MspI	CCGG	1 cut(s)	393
MspR9I	CCNGG	1 cut(s)	393
MvnI	CGCG	1 cut(s)	498
MwoI	GCNNNNNNNGC	3 cut(s)	287, 482, 845
NarI	GGCGCC	1 cut(s)	630
NciI	CCSGG	1 cut(s)	393
NdeII	GATC	6 cut(s)	206, 345, 670, 726, 738, 743
NlaIII	CATG	4 cut(s)	51, 352, 539, 553
NlaIV	GGNNCC	2 cut(s)	631, 646
PdmI	GAANNNNTTC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	460
PkrI	GCNGC	5 cut(s)	292, 379, 478, 481, 484
Ple19I	CGATCG	1 cut(s)	746
PleI	GAGTC	5 cut(s)	164, 256, 353, 669, 832
PluTI	GGCGCC	1 cut(s)	633
PpsI	GAGTC	5 cut(s)	164, 256, 353, 669, 832
PpuMI	RGGWCCY	1 cut(s)	645
Psp124BI	GAGCTC	1 cut(s)	507
Psp5II	RGGWCCY	1 cut(s)	645
PspN4I	GGNNCC	2 cut(s)	631, 646
PspPI	GGNCC	1 cut(s)	645
PspPPI	RGGWCCY	1 cut(s)	645
PsuI	RGATCY	1 cut(s)	738
PvuI	CGATCG	1 cut(s)	746
RsaI	GTAC	2 cut(s)	419, 587
RsaNI	GTAC	2 cut(s)	418, 586
RseI	CAYNNNNRTG	2 cut(s)	320, 548
SacI	GAGCTC	1 cut(s)	507
SacII	CCGCGG	1 cut(s)	499
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	5 cut(s)	291, 378, 477, 480, 483
Sau3AI	GATC	6 cut(s)	206, 345, 670, 726, 738, 743
Sau96I	GGNCC	1 cut(s)	645
SchI	GAGTC	5 cut(s)	164, 257, 353, 669, 833
ScrFI	CCNGG	1 cut(s)	393
SduI	GDGCHC	5 cut(s)	312, 327, 357, 393, 507
SfaNI	GCATC	1 cut(s)	826
SfoI	GGCGCC	1 cut(s)	631
Sfr303I	CCGCGG	1 cut(s)	499
SgrBI	CCGCGG	1 cut(s)	499
SinI	GGWCC	1 cut(s)	645
SmiMI	CAYNNNNRTG	2 cut(s)	320, 548
SmlI	CTYRAG	2 cut(s)	144, 183
SmoI	CTYRAG	2 cut(s)	144, 183
Sse9I	AATT	4 cut(s)	21, 61, 487, 581
SspDI	GGCGCC	1 cut(s)	629
SspMI	CTAG	2 cut(s)	216, 804
SstI	GAGCTC	1 cut(s)	507
StyD4I	CCNGG	1 cut(s)	391
TaiI	ACGT	3 cut(s)	59, 302, 435
TaqI	TCGA	3 cut(s)	357, 673, 746
TasI	AATT	4 cut(s)	21, 61, 487, 581
TatI	WGTACW	2 cut(s)	417, 585
TauI	GCSGC	4 cut(s)	293, 380, 479, 482
TfiI	GAWTC	1 cut(s)	460
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	1 cut(s)	482
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	1 cut(s)	181
VneI	GTGCAC	2 cut(s)	308, 323
VpaK11BI	GGWCC	1 cut(s)	645
XagI	CCTNNNNNAGG	1 cut(s)	614
XmnI	GAANNNNTTC	1 cut(s)	275
XspI	CTAG	2 cut(s)	216, 804
ZraI	GACGTC	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.