Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004599.1

Orthogroup ID

OG0010269

Physical Location & Seq

Genomic Coordinates Forward (+)

13740 .. 16853

Gene Structure 3114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004599.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atggagtctatcttcggtttggttgggaacgatttcgccatagtggcggcggacacgtcggcggtgcacagcatactggtgcacaagaacaacgaggacaagatcatggtgcttgactcgcacaagctaatcgcggccagcggtgagcccggagacagggttcagttcacggagtacatccagaaaaacgtgtcgctctatcagtttcgcaatgggattcctctgaccactgccgccgctgctaatttcacccgcggtgagctcgccacggccttgcgtaagttcacggagtacatccagaagaacgtgtcgctctatcagtttcgcaatgggattcctctgaccactgccgccgcagctaatttcacccgcggtgagctcgccacggccttgcgtaagaacccataccatgtgaacattctcatggctggatatgataaagagaagggggcagaactgtactacattgattacattgcttccctccacaaggttgaaaagggcgcctttggttacgggtcctattttgctctctcccttatggatcgactctatcacaaaggtatgtctgttgaagaagccattgccttagttgacaagatcattattgagatccgatcaaggctcgtcgttgctccacctaactttgtcatcaagatagtggacaaggatggagctagggagtatgcgtggcgtgagtccatcaaggatgctggtgtggctggtgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005839 GO:0005886 GO:0016020 GO:0019774 GO:0031090 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944 GO:0098588 GO:0098805 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

243

Amino Acids

26.89

Weight (kDa)

7.86

Isoelectric Point (pI)

20.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22630 AT4G14800 AT4G14800
fragaria_vesca	FvH4_4g15960 FvH4_7g08790
malus_domestica	MD13G1196600.v1.1 MD16G1197000.v1.1
prunus_persica	Prupe.1G017400_v2.0.a1 Prupe.1G017400_v2.0.a1
pyrus_communis	pycom01g08470 pycom16g16580
rosa_chinensis	RchiOBHm_Chr4g0415561
rosa_laevigata	RLG00000008063
rosa_multiflora	Rmu_sc0004599.1_g000004
rosa_roxburghii	Rroxscaffold_5G00359380
rosa_rugosa	Rorug04G0134700
rosa_samantha	Rh4AG196100 Rh4BG194800 Rh4CG206800 Rh4DG193600
rosa_wichuraiana	Rw4G016670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	503
AccII	CGCG	3 cut(s)	134, 255, 372
AclWI	GGATC	2 cut(s)	552, 607
AcoI	YGGCCR	1 cut(s)	135
AcyI	GRCGYC	1 cut(s)	504
AfaI	GTAC	3 cut(s)	176, 293, 461
AfiI	CCNNNNNNNGG	2 cut(s)	156, 490
AflIII	ACRYGT	3 cut(s)	54, 189, 306
AgsI	TTSAA	2 cut(s)	497, 575
AjiI	CACGTC	1 cut(s)	57
AloI	GAACNNNNNNTCC	2 cut(s)	144, 176
AluBI	AGCT	5 cut(s)	127, 262, 359, 379, 677
AluI	AGCT	5 cut(s)	127, 262, 359, 379, 677
Alw21I	GWGCWC	4 cut(s)	69, 84, 264, 381
Alw26I	GTCTC	1 cut(s)	147
Alw44I	GTGCAC	2 cut(s)	65, 80
AlwI	GGATC	2 cut(s)	552, 607
AoxI	GGCC	3 cut(s)	135, 270, 387
ApaLI	GTGCAC	2 cut(s)	65, 80
ApeKI	GCWGC	2 cut(s)	239, 356
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	506
AspS9I	GGNCC	1 cut(s)	519
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	5 cut(s)	155, 241, 269, 358, 386
AvaII	GGWCC	1 cut(s)	519
BaeGI	GKGCMC	2 cut(s)	69, 84
BanI	GGYRCC	1 cut(s)	503
BanII	GRGCYC	3 cut(s)	150, 264, 381
Bbv12I	GWGCWC	4 cut(s)	69, 84, 264, 381
BbvI	GCAGC	2 cut(s)	226, 368
BccI	CCATC	2 cut(s)	665, 710
BceAI	ACGGC	2 cut(s)	285, 402
BcnI	CCSGG	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	1 cut(s)	678
BfoI	RGCGCY	1 cut(s)	507
BglI	GCCNNNNNGGC	1 cut(s)	44
BisI	GCNGC	8 cut(s)	48, 135, 234, 237, 240, 351, 354, 357
BlsI	GCNGC	8 cut(s)	49, 136, 235, 238, 241, 352, 355, 358
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	1 cut(s)	519
BmgBI	CACGTC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	519
BmiI	GGNNCC	2 cut(s)	505, 520
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	1 cut(s)	700
BpuMI	CCSGG	1 cut(s)	150
BsaHI	GRCGYC	1 cut(s)	504
BsaJI	CCNNGG	4 cut(s)	253, 267, 370, 384
BsaXI	ACNNNNNCTCC	4 cut(s)	144, 174, 674, 704
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 490
Bse1I	ACTGG	1 cut(s)	81
Bse3DI	GCAATG	4 cut(s)	217, 334, 474, 582
BseDI	CCNNGG	4 cut(s)	253, 267, 370, 384
BseGI	GGATG	4 cut(s)	177, 294, 676, 715
BseLI	CCNNNNNNNGG	2 cut(s)	156, 490
BseMI	GCAATG	4 cut(s)	217, 334, 474, 582
BseNI	ACTGG	1 cut(s)	81
BseSI	GKGCMC	2 cut(s)	69, 84
BseXI	GCAGC	2 cut(s)	226, 368
Bsh1236I	CGCG	3 cut(s)	134, 255, 372
BshFI	GGCC	3 cut(s)	137, 272, 389
BshNI	GGYRCC	1 cut(s)	503
BsiHKAI	GWGCWC	4 cut(s)	69, 84, 264, 381
BsiSI	CCGG	1 cut(s)	150
BslI	CCNNNNNNNGG	2 cut(s)	156, 490
BsmAI	GTCTC	1 cut(s)	147
BsnI	GGCC	3 cut(s)	137, 272, 389
Bsp1286I	GDGCHC	5 cut(s)	69, 84, 150, 264, 381
Bsp143I	GATC	5 cut(s)	102, 544, 600, 612, 617
BspANI	GGCC	3 cut(s)	137, 272, 389
BspFNI	CGCG	3 cut(s)	134, 255, 372
BspLI	GGNNCC	2 cut(s)	505, 520
BspPI	GGATC	2 cut(s)	552, 607
BspT107I	GGYRCC	1 cut(s)	503
BsrDI	GCAATG	4 cut(s)	217, 334, 474, 582
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	4 cut(s)	253, 267, 370, 384
BssMI	GATC	5 cut(s)	102, 544, 600, 612, 617
BssNI	GRCGYC	1 cut(s)	504
Bst4CI	ACNGT	1 cut(s)	459
BstACI	GRCGYC	1 cut(s)	504
BstC8I	GCNNGC	3 cut(s)	139, 264, 381
BstDEI	CTNAG	1 cut(s)	589
BstDSI	CCRYGG	4 cut(s)	253, 267, 370, 384
BstENI	CCTNNNNNAGG	1 cut(s)	488
BstF5I	GGATG	4 cut(s)	177, 294, 676, 715
BstFNI	CGCG	3 cut(s)	134, 255, 372
BstH2I	RGCGCY	1 cut(s)	507
BstHHI	GCGC	1 cut(s)	506
BstKTI	GATC	5 cut(s)	105, 547, 603, 615, 620
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	5 cut(s)	102, 544, 600, 612, 617
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 118, 239, 356, 719
BstSCI	CCNGG	1 cut(s)	148
BstSLI	GKGCMC	2 cut(s)	69, 84
BstUI	CGCG	3 cut(s)	134, 255, 372
BstV1I	GCAGC	2 cut(s)	226, 368
BstX2I	RGATCY	1 cut(s)	612
BstYI	RGATCY	1 cut(s)	612
BsuRI	GGCC	3 cut(s)	137, 272, 389
BtgI	CCRYGG	4 cut(s)	253, 267, 370, 384
BtrI	CACGTC	1 cut(s)	57
BtsCI	GGATG	4 cut(s)	177, 294, 676, 715
BtsI	GCAGTG	2 cut(s)	228, 345
BtsIMutI	CAGTG	2 cut(s)	228, 345
Cac8I	GCNNGC	3 cut(s)	139, 264, 381
CfoI	GCGC	1 cut(s)	506
Cfr13I	GGNCC	1 cut(s)	519
Cfr42I	CCGCGG	2 cut(s)	256, 373
Csp6I	GTAC	3 cut(s)	175, 292, 460
CviAII	CATG	3 cut(s)	106, 410, 424
CviQI	GTAC	3 cut(s)	175, 292, 460
DdeI	CTNAG	1 cut(s)	589
DinI	GGCGCC	1 cut(s)	505
DpnI	GATC	5 cut(s)	104, 546, 602, 614, 619
DpnII	GATC	5 cut(s)	102, 544, 600, 612, 617
EaeI	YGGCCR	1 cut(s)	135
EciI	GGCGGA	1 cut(s)	65
Ecl136II	GAGCTC	2 cut(s)	262, 379
Eco24I	GRGCYC	3 cut(s)	150, 264, 381
Eco47I	GGWCC	1 cut(s)	519
Eco53kI	GAGCTC	2 cut(s)	262, 379
EcoICRI	GAGCTC	2 cut(s)	262, 379
EcoNI	CCTNNNNNAGG	1 cut(s)	488
EcoO109I	RGGNCCY	1 cut(s)	519
EcoT38I	GRGCYC	3 cut(s)	150, 264, 381
EgeI	GGCGCC	1 cut(s)	505
EheI	GGCGCC	1 cut(s)	505
FaeI	CATG	3 cut(s)	109, 413, 427
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FatI	CATG	3 cut(s)	105, 409, 423
FauI	CCCGC	2 cut(s)	260, 377
Fnu4HI	GCNGC	8 cut(s)	48, 135, 234, 237, 240, 351, 354, 357
FokI	GGATG	4 cut(s)	164, 281, 683, 722
FriOI	GRGCYC	3 cut(s)	150, 264, 381
Fsp4HI	GCNGC	8 cut(s)	48, 135, 234, 237, 240, 351, 354, 357
FspBI	CTAG	1 cut(s)	678
GlaI	GCGC	1 cut(s)	505
GluI	GCNGC	8 cut(s)	48, 135, 234, 237, 240, 351, 354, 357
HaeII	RGCGCY	1 cut(s)	507
HaeIII	GGCC	3 cut(s)	137, 272, 389
HapII	CCGG	1 cut(s)	150
HhaI	GCGC	1 cut(s)	506
Hin1I	GRCGYC	1 cut(s)	504
Hin1II	CATG	3 cut(s)	109, 413, 427
Hin6I	GCGC	1 cut(s)	504
HinP1I	GCGC	1 cut(s)	504
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HinfI	GANTC	6 cut(s)	5, 116, 217, 334, 549, 698
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	5 cut(s)	155, 241, 269, 358, 386
Hpy166II	GTNNAC	7 cut(s)	67, 82, 168, 285, 415, 595, 664
Hpy188I	TCNGA	3 cut(s)	225, 342, 617
Hpy188III	TCNNGA	3 cut(s)	181, 298, 655
Hpy8I	GTNNAC	7 cut(s)	67, 82, 168, 285, 415, 595, 664
Hpy99I	CGWCG	2 cut(s)	61, 632
HpyAV	CCTTC	1 cut(s)	439
HpyCH4III	ACNGT	1 cut(s)	459
HpyCH4IV	ACGT	3 cut(s)	56, 189, 306
HpyCH4V	TGCA	2 cut(s)	67, 82
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 118, 239, 356, 719
HpyF3I	CTNAG	1 cut(s)	589
HpySE526I	ACGT	3 cut(s)	56, 189, 306
Hsp92I	GRCGYC	1 cut(s)	504
Hsp92II	CATG	3 cut(s)	109, 413, 427
HspAI	GCGC	1 cut(s)	504
KasI	GGCGCC	1 cut(s)	503
KspI	CCGCGG	2 cut(s)	256, 373
Kzo9I	GATC	5 cut(s)	102, 544, 600, 612, 617
LmnI	GCTCC	2 cut(s)	640, 674
LpnPI	CCDG	9 cut(s)	62, 142, 151, 163, 194, 311, 414, 699, 708
Lsp1109I	GCAGC	2 cut(s)	226, 368
LweI	GCATC	1 cut(s)	700
MaeI	CTAG	1 cut(s)	678
MaeII	ACGT	3 cut(s)	56, 189, 306
MaeIII	GTNAC	1 cut(s)	512
MalI	GATC	5 cut(s)	104, 546, 602, 614, 619
MboI	GATC	5 cut(s)	102, 544, 600, 612, 617
MboII	GAAGA	3 cut(s)	4, 313, 587
MflI	RGATCY	1 cut(s)	612
MhlI	GDGCHC	5 cut(s)	69, 84, 150, 264, 381
MluCI	AATT	2 cut(s)	244, 361
Mly113I	GGCGCC	1 cut(s)	504
MlyI	GAGTC	4 cut(s)	14, 110, 543, 707
MnlI	CCTC	4 cut(s)	88, 231, 348, 494
MroXI	GAANNNNTTC	1 cut(s)	32
MslI	CAYNNNNRTG	2 cut(s)	77, 422
MspA1I	CMGCKG	4 cut(s)	141, 239, 255, 372
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	150
MvnI	CGCG	3 cut(s)	134, 255, 372
MwoI	GCNNNNNNNGC	5 cut(s)	44, 118, 239, 356, 719
NarI	GGCGCC	1 cut(s)	504
NciI	CCSGG	1 cut(s)	150
NdeII	GATC	5 cut(s)	102, 544, 600, 612, 617
NlaIII	CATG	3 cut(s)	109, 413, 427
NlaIV	GGNNCC	2 cut(s)	505, 520
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	217, 334
PkrI	GCNGC	8 cut(s)	49, 136, 235, 238, 241, 352, 355, 358
PleI	GAGTC	4 cut(s)	13, 110, 543, 706
PluTI	GGCGCC	1 cut(s)	507
PpsI	GAGTC	4 cut(s)	13, 110, 543, 706
PpuMI	RGGWCCY	1 cut(s)	519
Psp124BI	GAGCTC	2 cut(s)	264, 381
Psp5II	RGGWCCY	1 cut(s)	519
PspN4I	GGNNCC	2 cut(s)	505, 520
PspPI	GGNCC	1 cut(s)	519
PspPPI	RGGWCCY	1 cut(s)	519
PsuI	RGATCY	1 cut(s)	612
RsaI	GTAC	3 cut(s)	176, 293, 461
RsaNI	GTAC	3 cut(s)	175, 292, 460
RseI	CAYNNNNRTG	2 cut(s)	77, 422
SacI	GAGCTC	2 cut(s)	264, 381
SacII	CCGCGG	2 cut(s)	256, 373
SatI	GCNGC	8 cut(s)	48, 135, 234, 237, 240, 351, 354, 357
Sau3AI	GATC	5 cut(s)	102, 544, 600, 612, 617
Sau96I	GGNCC	1 cut(s)	519
SchI	GAGTC	4 cut(s)	14, 110, 543, 707
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	5 cut(s)	69, 84, 150, 264, 381
SfaNI	GCATC	1 cut(s)	700
SfoI	GGCGCC	1 cut(s)	505
Sfr303I	CCGCGG	2 cut(s)	256, 373
SgrBI	CCGCGG	2 cut(s)	256, 373
SinI	GGWCC	1 cut(s)	519
SmiMI	CAYNNNNRTG	2 cut(s)	77, 422
Sse9I	AATT	2 cut(s)	244, 361
SspDI	GGCGCC	1 cut(s)	503
SspMI	CTAG	1 cut(s)	678
SstI	GAGCTC	2 cut(s)	264, 381
StyD4I	CCNGG	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	459
TaiI	ACGT	3 cut(s)	59, 192, 309
TaqI	TCGA	1 cut(s)	547
TasI	AATT	2 cut(s)	244, 361
TatI	WGTACW	3 cut(s)	174, 291, 459
TauI	GCSGC	6 cut(s)	50, 137, 236, 239, 353, 356
TfiI	GAWTC	2 cut(s)	217, 334
TscAI	CASTG	2 cut(s)	235, 352
TseI	GCWGC	2 cut(s)	239, 356
TspGWI	ACGGA	2 cut(s)	185, 302
TspRI	CASTG	2 cut(s)	235, 352
VneI	GTGCAC	2 cut(s)	65, 80
VpaK11BI	GGWCC	1 cut(s)	519
XagI	CCTNNNNNAGG	1 cut(s)	488
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.