Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0010269

Physical Location & Seq

Genomic Coordinates Reverse (-)

17500658 .. 17503744

Gene Structure 3087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1197000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGAGTCCATCTTCGGTTTGGTAGGCGATGGCTTTGCCGTCGTGGCAGCGGACACTTCAGCCGTGCACAGCATACTGGTCCACAAGTCCAACGAAGACAAGATCATGGTGCTCGACTCCCACAAGCTCGTCGCTGCTAGCGGCGAGCCCGGCGACAGGGTTCAGTTCACGGAATACATACAGAAGAACGTGGCATTGTACCAGTTCCGGAATGGGATTCCGTTGACCACCGCTGCTGCTGCCAATTTCACCCGCGGCGAGCTCGCCACTGCCTTGCGAAAGAATCCATACATGGTGAACATCTTGATGGCTGGTTTTGACAAGGAGGCTGGGGCATCCCTTTACTACATCGATTACATTGCCTCTCTTCACAAGGTTGAGAAAGGAGCCTTTGGATATGGGTCGTACTTCGCACTCTCACTGATGGACAGGCACTACCACAGTGGCATGTCTGTGGAGGAAGCAATTGACTTGGTCGACAAGTGCATCATTGAGATCCGGTCAAGGCTGGTGGTGGCTCCCCCAAACTTTGTGATCAAGATTGTTGACAAGGATGGGGCAAGGGAATATGCGTGGCGAGAGTCCATCAGGGATGCCGGTGTTGCTGCAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005839 GO:0005886 GO:0016020 GO:0019774 GO:0031090 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944 GO:0098588 GO:0098805 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

205

Amino Acids

22.34

Weight (kDa)

5.86

Isoelectric Point (pI)

30.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	3 - 182	3e-41	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22630 AT4G14800 AT4G14800
fragaria_vesca	FvH4_4g15960 FvH4_7g08790
malus_domestica	MD13G1196600.v1.1 MD16G1197000.v1.1
prunus_persica	Prupe.1G017400_v2.0.a1 Prupe.1G017400_v2.0.a1
pyrus_communis	pycom01g08470 pycom16g16580
rosa_chinensis	RchiOBHm_Chr4g0415561
rosa_laevigata	RLG00000008063
rosa_multiflora	Rmu_sc0004599.1_g000004
rosa_roxburghii	Rroxscaffold_5G00359380
rosa_rugosa	Rorug04G0134700
rosa_samantha	Rh4AG196100 Rh4BG194800 Rh4CG206800 Rh4DG193600
rosa_wichuraiana	Rw4G016670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	477
AccII	CGCG	1 cut(s)	255
AccIII	TCCGGA	1 cut(s)	207
AciI	CCGC	5 cut(s)	50, 141, 231, 253, 255
AclWI	GGATC	1 cut(s)	490
AcuI	CTGAAG	1 cut(s)	42
AfaI	GTAC	2 cut(s)	200, 407
AfiI	CCNNNNNNNGG	1 cut(s)	156
AluBI	AGCT	2 cut(s)	127, 262
AluI	AGCT	2 cut(s)	127, 262
Alw21I	GWGCWC	3 cut(s)	69, 114, 264
Alw44I	GTGCAC	1 cut(s)	65
AlwI	GGATC	1 cut(s)	490
Aor13HI	TCCGGA	1 cut(s)	207
ApaLI	GTGCAC	1 cut(s)	65
ApeKI	GCWGC	7 cut(s)	47, 134, 233, 236, 239, 605, 608
AspS9I	GGNCC	1 cut(s)	79
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	2 cut(s)	241, 307
AsuNHI	GCTAGC	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	69
BanII	GRGCYC	2 cut(s)	150, 264
BbsI	GAAGAC	1 cut(s)	102
Bbv12I	GWGCWC	3 cut(s)	69, 114, 264
BbvI	GCAGC	6 cut(s)	59, 121, 220, 223, 226, 592
BccI	CCATC	6 cut(s)	17, 23, 301, 418, 548, 593
BceAI	ACGGC	2 cut(s)	23, 47
BcgI	CGANNNNNNTGC	4 cut(s)	17, 51, 341, 375
BclI	TGATCA	1 cut(s)	534
BcnI	CCSGG	1 cut(s)	150
BfaI	CTAG	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	606
BglI	GCCNNNNNGGC	1 cut(s)	44
BisI	GCNGC	9 cut(s)	48, 135, 142, 234, 237, 240, 256, 606, 609
BlsI	GCNGC	9 cut(s)	49, 136, 143, 235, 238, 241, 257, 607, 610
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	2 cut(s)	388, 519
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	3 cut(s)	344, 495, 583
BmtI	GCTAGC	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	102
BpuMI	CCSGG	1 cut(s)	150
Bsa29I	ATCGAT	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	253
BsaWI	WCCGGW	2 cut(s)	207, 498
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse118I	RCCGGY	1 cut(s)	596
Bse1I	ACTGG	2 cut(s)	81, 202
Bse3DI	GCAATG	1 cut(s)	357
BseAI	TCCGGA	1 cut(s)	207
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	3 cut(s)	335, 559, 598
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMI	GCAATG	1 cut(s)	357
BseNI	ACTGG	2 cut(s)	81, 202
BseSI	GKGCMC	1 cut(s)	69
BseXI	GCAGC	6 cut(s)	59, 121, 220, 223, 226, 592
BseYI	CCCAGC	1 cut(s)	329
Bsh1236I	CGCG	1 cut(s)	255
BshVI	ATCGAT	1 cut(s)	351
BsiHKAI	GWGCWC	3 cut(s)	69, 114, 264
BsiSI	CCGG	4 cut(s)	150, 208, 499, 597
BslI	CCNNNNNNNGG	1 cut(s)	156
Bsp1286I	GDGCHC	4 cut(s)	69, 114, 150, 264
Bsp13I	TCCGGA	1 cut(s)	207
Bsp143I	GATC	3 cut(s)	102, 495, 534
BspACI	CCGC	5 cut(s)	50, 141, 231, 253, 255
BspDI	ATCGAT	1 cut(s)	351
BspEI	TCCGGA	1 cut(s)	207
BspFNI	CGCG	1 cut(s)	255
BspLI	GGNNCC	2 cut(s)	388, 519
BspMAI	CTGCAG	1 cut(s)	610
BspOI	GCTAGC	1 cut(s)	141
BspPI	GGATC	1 cut(s)	490
BsrDI	GCAATG	1 cut(s)	357
BsrFI	RCCGGY	1 cut(s)	596
BsrI	ACTGG	2 cut(s)	81, 202
BssAI	RCCGGY	1 cut(s)	596
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	3 cut(s)	102, 495, 534
Bst4CI	ACNGT	1 cut(s)	443
Bst6I	CTCTTC	1 cut(s)	372
BstC8I	GCNNGC	4 cut(s)	139, 146, 260, 264
BstDSI	CCRYGG	1 cut(s)	253
BstF5I	GGATG	3 cut(s)	335, 559, 598
BstFNI	CGCG	1 cut(s)	255
BstKTI	GATC	3 cut(s)	105, 498, 537
BstMBI	GATC	3 cut(s)	102, 495, 534
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 150, 239, 602
BstNSI	RCATGY	1 cut(s)	451
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	1 cut(s)	606
BstSLI	GKGCMC	1 cut(s)	69
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	6 cut(s)	59, 121, 220, 223, 226, 592
BstV2I	GAAGAC	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	495
BstYI	RGATCY	1 cut(s)	495
Bsu15I	ATCGAT	1 cut(s)	351
BsuTUI	ATCGAT	1 cut(s)	351
BtgI	CCRYGG	1 cut(s)	253
BtgZI	GCGATG	1 cut(s)	42
BtsCI	GGATG	3 cut(s)	335, 559, 598
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	3 cut(s)	267, 419, 448
Cac8I	GCNNGC	4 cut(s)	139, 146, 260, 264
Cfr10I	RCCGGY	1 cut(s)	596
Cfr13I	GGNCC	1 cut(s)	79
Cfr42I	CCGCGG	1 cut(s)	256
ClaI	ATCGAT	1 cut(s)	351
Csp6I	GTAC	2 cut(s)	199, 406
CspCI	CAANNNNNGTGG	2 cut(s)	492, 527
CviAII	CATG	4 cut(s)	106, 292, 448, 612
CviQI	GTAC	2 cut(s)	199, 406
DpnI	GATC	3 cut(s)	104, 497, 536
DpnII	GATC	3 cut(s)	102, 495, 534
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Ecl136II	GAGCTC	1 cut(s)	262
Eco24I	GRGCYC	2 cut(s)	150, 264
Eco47I	GGWCC	1 cut(s)	79
Eco53kI	GAGCTC	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	42
EcoICRI	GAGCTC	1 cut(s)	262
EcoT38I	GRGCYC	2 cut(s)	150, 264
FaeI	CATG	4 cut(s)	109, 295, 451, 615
FaiI	YATR	9 cut(s)	74, 107, 179, 289, 293, 399, 449, 570, 613
FatI	CATG	4 cut(s)	105, 291, 447, 611
FauI	CCCGC	1 cut(s)	260
FbaI	TGATCA	1 cut(s)	534
FblI	GTMKAC	1 cut(s)	477
Fnu4HI	GCNGC	9 cut(s)	48, 135, 142, 234, 237, 240, 256, 606, 609
FokI	GGATG	3 cut(s)	322, 566, 605
FriOI	GRGCYC	2 cut(s)	150, 264
Fsp4HI	GCNGC	9 cut(s)	48, 135, 142, 234, 237, 240, 256, 606, 609
FspBI	CTAG	1 cut(s)	138
GluI	GCNGC	9 cut(s)	48, 135, 142, 234, 237, 240, 256, 606, 609
GsaI	CCCAGC	1 cut(s)	333
HapII	CCGG	4 cut(s)	150, 208, 499, 597
Hin1II	CATG	4 cut(s)	109, 295, 451, 615
HincII	GTYRAC	3 cut(s)	225, 478, 547
HindII	GTYRAC	3 cut(s)	225, 478, 547
HinfI	GANTC	5 cut(s)	5, 116, 217, 283, 581
HpaII	CCGG	4 cut(s)	150, 208, 499, 597
HphI	GGTGA	2 cut(s)	241, 307
Hpy166II	GTNNAC	7 cut(s)	67, 82, 168, 225, 298, 478, 547
Hpy188III	TCNNGA	3 cut(s)	208, 304, 538
Hpy8I	GTNNAC	7 cut(s)	67, 82, 168, 225, 298, 478, 547
Hpy99I	CGWCG	2 cut(s)	44, 134
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	3 cut(s)	67, 486, 608
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 150, 239, 602
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	4 cut(s)	109, 295, 451, 615
Kpn2I	TCCGGA	1 cut(s)	207
Ksp22I	TGATCA	1 cut(s)	534
KspI	CCGCGG	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	102, 495, 534
LmnI	GCTCC	2 cut(s)	386, 523
Lsp1109I	GCAGC	6 cut(s)	59, 121, 220, 223, 226, 592
LweI	GCATC	3 cut(s)	344, 495, 583
MaeI	CTAG	1 cut(s)	138
MaeII	ACGT	1 cut(s)	189
MalI	GATC	3 cut(s)	104, 497, 536
MboI	GATC	3 cut(s)	102, 495, 534
MboII	GAAGA	4 cut(s)	4, 107, 196, 359
MfeI	CAATTG	1 cut(s)	465
MflI	RGATCY	1 cut(s)	495
MhlI	GDGCHC	4 cut(s)	69, 114, 150, 264
MluCI	AATT	2 cut(s)	244, 465
MlyI	GAGTC	3 cut(s)	14, 110, 590
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	3 cut(s)	319, 373, 451
MroI	TCCGGA	1 cut(s)	207
MslI	CAYNNNNRTG	2 cut(s)	305, 452
MspA1I	CMGCKG	3 cut(s)	50, 233, 255
MspI	CCGG	4 cut(s)	150, 208, 499, 597
MspR9I	CCNGG	1 cut(s)	150
MunI	CAATTG	1 cut(s)	465
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	4 cut(s)	44, 150, 239, 602
NciI	CCSGG	1 cut(s)	150
NdeII	GATC	3 cut(s)	102, 495, 534
NheI	GCTAGC	1 cut(s)	137
NlaIII	CATG	4 cut(s)	109, 295, 451, 615
NlaIV	GGNNCC	2 cut(s)	388, 519
NspI	RCATGY	1 cut(s)	451
PfeI	GAWTC	2 cut(s)	217, 283
PflFI	GACNNNGTC	1 cut(s)	473
PkrI	GCNGC	9 cut(s)	49, 136, 143, 235, 238, 241, 257, 607, 610
PleI	GAGTC	3 cut(s)	13, 110, 589
PpsI	GAGTC	3 cut(s)	13, 110, 589
Psp124BI	GAGCTC	1 cut(s)	264
PspFI	CCCAGC	1 cut(s)	329
PspN4I	GGNNCC	2 cut(s)	388, 519
PspPI	GGNCC	1 cut(s)	79
PstI	CTGCAG	1 cut(s)	610
PsuI	RGATCY	1 cut(s)	495
PsyI	GACNNNGTC	1 cut(s)	473
RsaI	GTAC	2 cut(s)	200, 407
RsaNI	GTAC	2 cut(s)	199, 406
RseI	CAYNNNNRTG	2 cut(s)	305, 452
SacI	GAGCTC	1 cut(s)	264
SacII	CCGCGG	1 cut(s)	256
SalI	GTCGAC	1 cut(s)	476
SatI	GCNGC	9 cut(s)	48, 135, 142, 234, 237, 240, 256, 606, 609
Sau3AI	GATC	3 cut(s)	102, 495, 534
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	3 cut(s)	14, 110, 590
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	4 cut(s)	69, 114, 150, 264
SetI	ASST	4 cut(s)	129, 192, 264, 378
SfaNI	GCATC	3 cut(s)	344, 495, 583
SfcI	CTRYAG	1 cut(s)	606
Sfr303I	CCGCGG	1 cut(s)	256
SgrBI	CCGCGG	1 cut(s)	256
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	2 cut(s)	305, 452
Sse9I	AATT	2 cut(s)	244, 465
SsiI	CCGC	5 cut(s)	50, 141, 231, 253, 255
SspMI	CTAG	1 cut(s)	138
SstI	GAGCTC	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	443
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	3 cut(s)	114, 351, 477
TasI	AATT	2 cut(s)	244, 465
TauI	GCSGC	2 cut(s)	144, 258
TfiI	GAWTC	2 cut(s)	217, 283
TscAI	CASTG	3 cut(s)	274, 426, 448
TseI	GCWGC	7 cut(s)	47, 134, 233, 236, 239, 605, 608
TspGWI	ACGGA	2 cut(s)	185, 210
TspRI	CASTG	3 cut(s)	274, 426, 448
Tth111I	GACNNNGTC	1 cut(s)	473
VneI	GTGCAC	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	79
XceI	RCATGY	1 cut(s)	451
XcmI	CCANNNNNNNNNTGG	2 cut(s)	16, 209
XmiI	GTMKAC	1 cut(s)	477
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.