Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007528

Physical Location & Seq

Genomic Coordinates Reverse (-)

10841580 .. 10845443

Gene Structure 3864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g11880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGAAATTCTTCCACAACCCCAATCATCTTCACTCCTTAGTCTCCTCCATCATCGACACCTCCAAGAAGAAAGCCCAGTTCAACTACTTCACCAGGTGCTTCACTACTCGGGTCGACTTTGAGTCTCCACACACAAACCCACCCATGGATTCCAGCAAGCTACAGGAAAATACAGAAGCTTCATATTCGTCTTCTTCGTCTTCAAAGCTGGTGCTCTATTCCTACTGGCAGAGCTCATGCTCTTGGCGAGTTCGTTTCGCTCTAAACCTTAAAGGGCTTTCGTACGACTACAAGCCGGTGAACCTTGAGAAAGGGGAGCAGTTTAGTCCAGAATTTGAGCGTCTGAATCCTCTGCATTGTGTTCCTGTGTTGGTTGACGGTGATGTGGTGGTTTCGGACTCCTTTGCAATATTGCTGTATCTGGAGGAGAAGTACCCTCAGAGACCGTTATTGCCTGCTGACCCTCGGCTAAAAGCTCTTAACCTCCAGGGTGCAAGCATTATCAGCTCTAGTATACAGCCTCTTCACATGCTATCAAAGCTGAAGTACATGGAGGAAAAGATTGGTTCTGAAGAGAGTCTTTCTTGGGCTCAACTGCATATAGGAAAAGGTTTCCTTGCTCTTGAGAAGTTGCTGAAGGATTTTGCTAGCAAATTTGCCACAGGAAATGAAGTGTATATGACTGACGTGTTCTTAGCACCACAGATTGCTATAGCTGCAGCAAGGTTCAATATAAACATGTCCACATTCCCCAGTTTAAGTAGGGTGAATGAAACATACAAGGGTTTACCAGAATTCCAAGCTTCATCACCGGAAAGGCAACCTGATGCTGTGCATGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

GST_C_2 GST_C_3 GST_N_2 GST_N_3

Protein Analysis

282

Amino Acids

31.77

Weight (kDa)

7.72

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	69 - 142	1.5e-16	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	72 - 149	6.7e-16	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	78 - 143	4.9e-18	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g11880 FvH4_7g11880 FvH4_7g11880 FvH4_7g11880 FvH4_7g11880 FvH4_7g11880
malus_domestica	MD02G1204200.v1.1 MD07G1121100.v1.1
prunus_persica	Prupe.2G145300_v2.0.a1 Prupe.2G145300_v2.0.a1 Prupe.2G145300_v2.0.a1
pyrus_communis	pycom02g16660
rosa_chinensis	RchiOBHm_Chr1g0350551
rosa_laevigata	RLG00000028476
rosa_multiflora	Rmu_sc0009041.1_g000005
rosa_roxburghii	Rroxscaffold_4G00304750
rosa_rugosa	Rorug01G0211800 Rorug01G0211900 Rorug01G0212000 Rorug01G0212100
rosa_samantha	Rh1AG226600 Rh1BG195100 Rh1CG211400 Rh1DG223300
rosa_wichuraiana	Rw1G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	114, 514
AcsI	RAATTY	4 cut(s)	5, 332, 653, 794
AcuI	CTGAAG	3 cut(s)	563, 591, 656
AdeI	CACNNNGTG	1 cut(s)	96
AfaI	GTAC	3 cut(s)	284, 434, 548
AfiI	CCNNNNNNNGG	1 cut(s)	145
AflIII	ACRYGT	2 cut(s)	687, 738
AgsI	TTSAA	3 cut(s)	82, 204, 730
AhdI	GACNNNNNGTC	1 cut(s)	121
AjiI	CACGTC	1 cut(s)	688
AjnI	CCWGG	2 cut(s)	92, 486
AluBI	AGCT	9 cut(s)	160, 179, 208, 234, 476, 507, 541, 716, 803
AluI	AGCT	9 cut(s)	160, 179, 208, 234, 476, 507, 541, 716, 803
Alw21I	GWGCWC	2 cut(s)	216, 236
Alw26I	GTCTC	3 cut(s)	46, 129, 436
Ama87I	CYCGRG	1 cut(s)	108
ApeKI	GCWGC	2 cut(s)	716, 719
ApoI	RAATTY	4 cut(s)	5, 332, 653, 794
Asp700I	GAANNNNTTC	1 cut(s)	8
AsuHPI	GGTGA	5 cut(s)	82, 310, 392, 778, 801
AsuNHI	GCTAGC	1 cut(s)	647
AvaI	CYCGRG	1 cut(s)	108
BanII	GRGCYC	2 cut(s)	236, 592
BbsI	GAAGAC	2 cut(s)	183, 192
Bbv12I	GWGCWC	2 cut(s)	216, 236
BbvI	GCAGC	2 cut(s)	703, 731
BccI	CCATC	1 cut(s)	56
BciT130I	CCWGG	2 cut(s)	94, 488
BcoDI	GTCTC	3 cut(s)	46, 129, 436
BfaI	CTAG	2 cut(s)	510, 648
BfmI	CTRYAG	3 cut(s)	161, 711, 717
BisI	GCNGC	2 cut(s)	717, 720
BlsI	GCNGC	2 cut(s)	718, 721
Bme1390I	CCNGG	2 cut(s)	94, 488
BmeRI	GACNNNNNGTC	1 cut(s)	121
BmeT110I	CYCGRG	1 cut(s)	108
BmgBI	CACGTC	1 cut(s)	688
BmrFI	CCNGG	2 cut(s)	94, 488
BmrI	ACTGGG	2 cut(s)	70, 747
BmsI	GCATC	1 cut(s)	817
BmtI	GCTAGC	1 cut(s)	651
BmuI	ACTGGG	2 cut(s)	70, 747
BpiI	GAAGAC	2 cut(s)	183, 192
BpmI	CTGGAG	2 cut(s)	443, 470
BpuEI	CTTGAG	2 cut(s)	326, 644
BsaI	GGTCTC	1 cut(s)	436
BsaJI	CCNNGG	3 cut(s)	144, 464, 487
BsaWI	WCCGGW	1 cut(s)	811
BsaXI	ACNNNNNCTCC	2 cut(s)	416, 446
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse118I	RCCGGY	1 cut(s)	295
Bse1I	ACTGG	3 cut(s)	76, 230, 753
BseBI	CCWGG	2 cut(s)	94, 488
BseDI	CCNNGG	3 cut(s)	144, 464, 487
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMII	CTCAG	1 cut(s)	452
BseNI	ACTGG	3 cut(s)	76, 230, 753
BseRI	GAGGAG	2 cut(s)	34, 440
BseXI	GCAGC	2 cut(s)	703, 731
BsiHKAI	GWGCWC	2 cut(s)	216, 236
BsiHKCI	CYCGRG	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	296, 812
BsiWI	CGTACG	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	3 cut(s)	46, 129, 436
Bso31I	GGTCTC	1 cut(s)	436
BsoBI	CYCGRG	1 cut(s)	108
Bsp1286I	GDGCHC	3 cut(s)	216, 236, 592
Bsp19I	CCATGG	1 cut(s)	144
BspCNI	CTCAG	1 cut(s)	451
BspMAI	CTGCAG	1 cut(s)	721
BspOI	GCTAGC	1 cut(s)	651
BspTNI	GGTCTC	1 cut(s)	436
BsrFI	RCCGGY	1 cut(s)	295
BsrI	ACTGG	3 cut(s)	76, 230, 753
BssAI	RCCGGY	1 cut(s)	295
BssECI	CCNNGG	3 cut(s)	144, 464, 487
BssNAI	GTATAC	1 cut(s)	515
BssT1I	CCWWGG	1 cut(s)	144
Bst1107I	GTATAC	1 cut(s)	515
Bst2UI	CCWGG	2 cut(s)	94, 488
Bst4CI	ACNGT	2 cut(s)	380, 447
Bst6I	CTCTTC	2 cut(s)	528, 567
BstC8I	GCNNGC	4 cut(s)	158, 456, 496, 649
BstDEI	CTNAG	3 cut(s)	37, 438, 694
BstDSI	CCRYGG	1 cut(s)	144
BstMAI	GTCTC	3 cut(s)	46, 129, 436
BstMWI	GCNNNNNNNGC	3 cut(s)	504, 538, 716
BstNI	CCWGG	2 cut(s)	94, 488
BstNSI	RCATGY	2 cut(s)	532, 742
BstSCI	CCNGG	2 cut(s)	92, 486
BstSFI	CTRYAG	3 cut(s)	161, 711, 717
BstV1I	GCAGC	2 cut(s)	703, 731
BstV2I	GAAGAC	2 cut(s)	183, 192
BstZ17I	GTATAC	1 cut(s)	515
BtgI	CCRYGG	1 cut(s)	144
BtrI	CACGTC	1 cut(s)	688
Cac8I	GCNNGC	4 cut(s)	158, 456, 496, 649
Cfr10I	RCCGGY	1 cut(s)	295
CseI	GACGC	1 cut(s)	329
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	3 cut(s)	283, 433, 547
CviAII	CATG	6 cut(s)	145, 237, 529, 550, 739, 836
CviQI	GTAC	3 cut(s)	283, 433, 547
DdeI	CTNAG	3 cut(s)	37, 438, 694
DraIII	CACNNNGTG	1 cut(s)	96
DriI	GACNNNNNGTC	1 cut(s)	121
Eam1104I	CTCTTC	2 cut(s)	528, 567
Eam1105I	GACNNNNNGTC	1 cut(s)	121
EarI	CTCTTC	2 cut(s)	528, 567
Ecl136II	GAGCTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	2 cut(s)	236, 592
Eco31I	GGTCTC	1 cut(s)	436
Eco53kI	GAGCTC	1 cut(s)	234
Eco57I	CTGAAG	3 cut(s)	563, 591, 656
Eco88I	CYCGRG	1 cut(s)	108
EcoICRI	GAGCTC	1 cut(s)	234
EcoRI	GAATTC	1 cut(s)	794
EcoRII	CCWGG	2 cut(s)	92, 486
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	2 cut(s)	236, 592
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	6 cut(s)	148, 240, 532, 553, 742, 839
FalI	AAGNNNNNCTT	4 cut(s)	564, 596, 600, 632
FatI	CATG	6 cut(s)	144, 236, 528, 549, 738, 835
FblI	GTMKAC	2 cut(s)	114, 514
Fnu4HI	GCNGC	2 cut(s)	717, 720
FriOI	GRGCYC	2 cut(s)	236, 592
Fsp4HI	GCNGC	2 cut(s)	717, 720
FspBI	CTAG	2 cut(s)	510, 648
GluI	GCNGC	2 cut(s)	717, 720
GsuI	CTGGAG	2 cut(s)	443, 470
HapII	CCGG	2 cut(s)	296, 812
HgaI	GACGC	1 cut(s)	329
Hin1II	CATG	6 cut(s)	148, 240, 532, 553, 742, 839
HincII	GTYRAC	2 cut(s)	115, 376
HindII	GTYRAC	2 cut(s)	115, 376
HindIII	AAGCTT	2 cut(s)	177, 801
HinfI	GANTC	5 cut(s)	122, 149, 346, 398, 577
HpaII	CCGG	2 cut(s)	296, 812
HphI	GGTGA	5 cut(s)	82, 310, 392, 778, 801
Hpy166II	GTNNAC	6 cut(s)	115, 301, 376, 515, 744, 788
Hpy188I	TCNGA	4 cut(s)	345, 397, 441, 571
Hpy188III	TCNNGA	3 cut(s)	329, 422, 623
Hpy8I	GTNNAC	6 cut(s)	115, 301, 376, 515, 744, 788
HpyAV	CCTTC	1 cut(s)	631
HpyCH4III	ACNGT	2 cut(s)	380, 447
HpyCH4IV	ACGT	1 cut(s)	687
HpyCH4V	TGCA	6 cut(s)	355, 407, 494, 598, 719, 835
HpyF10VI	GCNNNNNNNGC	3 cut(s)	504, 538, 716
HpyF3I	CTNAG	3 cut(s)	37, 438, 694
HpySE526I	ACGT	1 cut(s)	687
Hsp92II	CATG	6 cut(s)	148, 240, 532, 553, 742, 839
LmnI	GCTCC	1 cut(s)	316
Lsp1109I	GCAGC	2 cut(s)	703, 731
LweI	GCATC	1 cut(s)	817
MabI	ACCWGGT	1 cut(s)	92
MaeI	CTAG	2 cut(s)	510, 648
MaeII	ACGT	1 cut(s)	687
MboII	GAAGA	7 cut(s)	20, 79, 183, 186, 192, 515, 584
MhlI	GDGCHC	3 cut(s)	216, 236, 592
MluCI	AATT	4 cut(s)	5, 332, 653, 794
MlyI	GAGTC	3 cut(s)	131, 392, 586
MnlI	CCTC	9 cut(s)	55, 70, 360, 418, 447, 474, 494, 531, 547
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	3 cut(s)	270, 480, 758
MspI	CCGG	2 cut(s)	296, 812
MspR9I	CCNGG	2 cut(s)	94, 488
MvaI	CCWGG	2 cut(s)	94, 488
MwoI	GCNNNNNNNGC	3 cut(s)	504, 538, 716
NcoI	CCATGG	1 cut(s)	144
NheI	GCTAGC	1 cut(s)	647
NlaIII	CATG	6 cut(s)	148, 240, 532, 553, 742, 839
NmeAIII	GCCGAG	1 cut(s)	445
NspI	RCATGY	2 cut(s)	532, 742
PciI	ACATGT	1 cut(s)	738
PcsI	WCGNNNNNNNCGW	1 cut(s)	194
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	149, 346
Pfl23II	CGTACG	1 cut(s)	282
PkrI	GCNGC	2 cut(s)	718, 721
PleI	GAGTC	3 cut(s)	130, 392, 585
PpsI	GAGTC	3 cut(s)	130, 392, 585
PscI	ACATGT	1 cut(s)	738
Psp124BI	GAGCTC	1 cut(s)	236
Psp6I	CCWGG	2 cut(s)	92, 486
PspGI	CCWGG	2 cut(s)	92, 486
PspLI	CGTACG	1 cut(s)	282
PstI	CTGCAG	1 cut(s)	721
RsaI	GTAC	3 cut(s)	284, 434, 548
RsaNI	GTAC	3 cut(s)	283, 433, 547
SacI	GAGCTC	1 cut(s)	236
SalI	GTCGAC	1 cut(s)	113
SaqAI	TTAA	3 cut(s)	270, 480, 758
SatI	GCNGC	2 cut(s)	717, 720
SchI	GAGTC	3 cut(s)	131, 392, 586
ScrFI	CCNGG	2 cut(s)	94, 488
SduI	GDGCHC	3 cut(s)	216, 236, 592
SexAI	ACCWGGT	1 cut(s)	92
SfaNI	GCATC	1 cut(s)	817
SfcI	CTRYAG	3 cut(s)	161, 711, 717
SmlI	CTYRAG	2 cut(s)	305, 623
SmoI	CTYRAG	2 cut(s)	305, 623
Sse9I	AATT	4 cut(s)	5, 332, 653, 794
SspI	AATATT	1 cut(s)	411
SspMI	CTAG	2 cut(s)	510, 648
SstI	GAGCTC	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	92, 486
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	2 cut(s)	380, 447
TaiI	ACGT	1 cut(s)	690
TaqI	TCGA	2 cut(s)	54, 114
TasI	AATT	4 cut(s)	5, 332, 653, 794
TatI	WGTACW	1 cut(s)	546
TfiI	GAWTC	2 cut(s)	149, 346
Tru1I	TTAA	3 cut(s)	270, 480, 758
Tru9I	TTAA	3 cut(s)	270, 480, 758
TseI	GCWGC	2 cut(s)	716, 719
TspDTI	ATGAA	5 cut(s)	17, 171, 684, 786, 795
XapI	RAATTY	4 cut(s)	5, 332, 653, 794
XceI	RCATGY	2 cut(s)	532, 742
XmiI	GTMKAC	2 cut(s)	114, 514
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	2 cut(s)	510, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.