Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0007528

Physical Location & Seq

Genomic Coordinates Forward (+)

15147330 .. 15148910

Gene Structure 1581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1121100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGAAACCACCAGCAGCAGCAGCAATCAGGTACCGGCTGCTTCAAAGCTCCTTCTCTATTCCTACTGGCAAAGCTCTTGCTCTTGGCGCGTCCGCTTCGCTCTCAATCTTAAAGGAGAGGAATCCGTGGGTATTGAACCCGTACCAAGTTGCATAGGACTCCCGTACGAGTACAAACCGGTGAGCCTACCAGCTGGAGAGCAGTTCAGTCCAGAGTTCAAGTGTTTGAATCCTCTTCATTTTGTTCCGGTGTTGGTCGATGGGGATACAGTGGTTTCAGACTCCTTTGCAATATTGCTGGTTAGTGTAGTTTGTTGGGAAATGGATCATCTGTTTCCAGTTTTTAAAGGTTTACTTGTTCCTCTAATTGTTCTGTTATTTGGGTACGATGTGTTCTTGTGGTGCTCGATTAGTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

GST_C_2 GST_C_3 GST_N_2 GST_N_3

Protein Analysis

140

Amino Acids

15.45

Weight (kDa)

4.66

Isoelectric Point (pI)

51.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_3	PF13417	19 - 99	5e-07	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	53 - 99	5e-09	Glutathione S-transferase, N-terminal domain
GST_N	PF02798	53 - 99	9.7e-08	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g11880 FvH4_7g11880 FvH4_7g11880 FvH4_7g11880 FvH4_7g11880 FvH4_7g11880
malus_domestica	MD02G1204200.v1.1 MD07G1121100.v1.1
prunus_persica	Prupe.2G145300_v2.0.a1 Prupe.2G145300_v2.0.a1 Prupe.2G145300_v2.0.a1
pyrus_communis	pycom02g16660
rosa_chinensis	RchiOBHm_Chr1g0350551
rosa_laevigata	RLG00000028476
rosa_multiflora	Rmu_sc0009041.1_g000005
rosa_roxburghii	Rroxscaffold_4G00304750
rosa_rugosa	Rorug01G0211800 Rorug01G0211900 Rorug01G0212000 Rorug01G0212100
rosa_samantha	Rh1AG226600 Rh1BG195100 Rh1CG211400 Rh1DG223300
rosa_wichuraiana	Rw1G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	31
AccB1I	GGYRCC	1 cut(s)	31
AccII	CGCG	1 cut(s)	90
AciI	CCGC	1 cut(s)	94
AclWI	GGATC	1 cut(s)	333
AfaI	GTAC	5 cut(s)	33, 144, 167, 173, 386
AgeI	ACCGGT	1 cut(s)	178
AgsI	TTSAA	4 cut(s)	45, 137, 220, 229
AluBI	AGCT	3 cut(s)	49, 75, 194
AluI	AGCT	3 cut(s)	49, 75, 194
Alw21I	GWGCWC	1 cut(s)	407
AlwI	GGATC	1 cut(s)	333
ApeKI	GCWGC	4 cut(s)	15, 18, 21, 38
AsiGI	ACCGGT	1 cut(s)	178
Asp718I	GGTACC	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	90
AsuHPI	GGTGA	1 cut(s)	193
BaeI	ACNNNNGTAYC	2 cut(s)	258, 291
BanI	GGYRCC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	407
BbvI	GCAGC	4 cut(s)	25, 27, 30, 33
BccI	CCATC	1 cut(s)	254
BciVI	GTATCC	1 cut(s)	259
BfuI	GTATCC	1 cut(s)	259
BisI	GCNGC	4 cut(s)	16, 19, 22, 39
BlsI	GCNGC	4 cut(s)	17, 20, 23, 40
BmiI	GGNNCC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	126
BsaWI	WCCGGW	2 cut(s)	178, 247
Bse118I	RCCGGY	2 cut(s)	34, 178
Bse1I	ACTGG	2 cut(s)	71, 338
BseDI	CCNNGG	1 cut(s)	126
BseNI	ACTGG	2 cut(s)	71, 338
BseXI	GCAGC	4 cut(s)	25, 27, 30, 33
Bsh1236I	CGCG	1 cut(s)	90
BshNI	GGYRCC	1 cut(s)	31
BshTI	ACCGGT	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	407
BsiSI	CCGG	3 cut(s)	35, 179, 248
BsiWI	CGTACG	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	407
Bsp143I	GATC	1 cut(s)	325
BspACI	CCGC	1 cut(s)	94
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	333
BspT107I	GGYRCC	1 cut(s)	31
BsrFI	RCCGGY	2 cut(s)	34, 178
BsrI	ACTGG	2 cut(s)	71, 338
BssAI	RCCGGY	2 cut(s)	34, 178
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	1 cut(s)	325
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	240
BstDSI	CCRYGG	1 cut(s)	126
BstFNI	CGCG	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	1 cut(s)	328
BstMBI	GATC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 87
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	4 cut(s)	25, 27, 30, 33
BsuI	GTATCC	1 cut(s)	259
BtgI	CCRYGG	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	276
CfoI	GCGC	1 cut(s)	90
Cfr10I	RCCGGY	2 cut(s)	34, 178
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	5 cut(s)	32, 143, 166, 172, 385
CspAI	ACCGGT	1 cut(s)	178
CviJI	RGCY	5 cut(s)	38, 49, 75, 186, 194
CviKI_1	RGCY	5 cut(s)	38, 49, 75, 186, 194
CviQI	GTAC	5 cut(s)	32, 143, 166, 172, 385
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
DraI	TTTAAA	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
FaiI	YATR	1 cut(s)	155
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
Fnu4HI	GCNGC	4 cut(s)	16, 19, 22, 39
Fsp4HI	GCNGC	4 cut(s)	16, 19, 22, 39
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	4 cut(s)	16, 19, 22, 39
GsuI	CTGGAG	1 cut(s)	216
HapII	CCGG	3 cut(s)	35, 179, 248
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	1 cut(s)	90
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HinfI	GANTC	4 cut(s)	122, 159, 229, 281
HpaII	CCGG	3 cut(s)	35, 179, 248
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	1 cut(s)	280
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	1 cut(s)	353
HpyAV	CCTTC	1 cut(s)	62
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4V	TGCA	2 cut(s)	153, 290
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 87
HspAI	GCGC	1 cut(s)	88
KpnI	GGTACC	1 cut(s)	35
Kzo9I	GATC	1 cut(s)	325
LmnI	GCTCC	1 cut(s)	54
Lsp1109I	GCAGC	4 cut(s)	25, 27, 30, 33
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	1 cut(s)	227
MhlI	GDGCHC	1 cut(s)	407
MluCI	AATT	1 cut(s)	366
MlyI	GAGTC	2 cut(s)	153, 275
MnlI	CCTC	3 cut(s)	112, 243, 372
MseI	TTAA	2 cut(s)	111, 345
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	3 cut(s)	35, 179, 248
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	21, 87
NdeII	GATC	1 cut(s)	325
NlaIV	GGNNCC	1 cut(s)	33
PfeI	GAWTC	2 cut(s)	122, 229
Pfl23II	CGTACG	1 cut(s)	165
PinAI	ACCGGT	1 cut(s)	178
PkrI	GCNGC	4 cut(s)	17, 20, 23, 40
PleI	GAGTC	2 cut(s)	153, 275
PpsI	GAGTC	2 cut(s)	153, 275
PspLI	CGTACG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	33
PsrI	GAACNNNNNNTAC	2 cut(s)	377, 409
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	5 cut(s)	33, 144, 167, 173, 386
RsaNI	GTAC	5 cut(s)	32, 143, 166, 172, 385
SaqAI	TTAA	2 cut(s)	111, 345
SatI	GCNGC	4 cut(s)	16, 19, 22, 39
Sau3AI	GATC	1 cut(s)	325
SchI	GAGTC	2 cut(s)	153, 275
SduI	GDGCHC	1 cut(s)	407
SetI	ASST	5 cut(s)	33, 51, 77, 196, 352
Sse9I	AATT	1 cut(s)	366
SsiI	CCGC	1 cut(s)	94
SspI	AATATT	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	271
TaqI	TCGA	2 cut(s)	258, 407
TasI	AATT	1 cut(s)	366
TatI	WGTACW	1 cut(s)	171
TfiI	GAWTC	2 cut(s)	122, 229
Tru1I	TTAA	2 cut(s)	111, 345
Tru9I	TTAA	2 cut(s)	111, 345
TscAI	CASTG	1 cut(s)	276
TseI	GCWGC	4 cut(s)	15, 18, 21, 38
TspDTI	ATGAA	1 cut(s)	227
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.