Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0007528

Physical Location & Seq

Genomic Coordinates Reverse (-)

31178839 .. 31189768

Gene Structure 10930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG195100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTCGTCGTCTTCCTCGTTTCACTGTCAGATTGTCAATCAGTTCAGCAACTATTCAACCCTGTACAAGTTACGACCAAAATCCACGTCGCTGTCTGGAAATAGAAAGAAGAAAAAAATGAAATTCTACCACAATCCCAGCCATCTTCACTCCTTAGTCTCCTCCATCATCAAAAGCTCCAGGAGAACCCAGTTGAACAACTTCACCAGGTGCTTCACTACTCGTGTCGGGTATGAGAGTCCACGCACAAGTCGACCCATGGATTCCAGCAAGCTCCAGAAAAATACAGAAGCTTCATATTCATCTTCTTCAAAGCTGGTGCTCTATTCCTACTGGCAGAGCTCATGCTCTTGGCGAGTTCGCTTCGCTCTAAACCTTAAAGGGCTTTCGTACGAGTACAAACCGGTGAACCTAGCGAACAGAGAGCAGTTTAATCCAGACTTTGAGCGTCTGAATCCTCTGCATTATGTTCCGGTGTTGGTTGATGGTGACACCGTGATTTCAGACTCCTATGCAATATTTCTGGTTAGTGTAATTTCTCAGGAAGTGAATCATTTTTCTTTTTTCTGTGATATGCAACCAATGAGTCGAGGACCTGAAAGCCTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

GST_C_2 GST_C_3 GST_N_2 GST_N_3

Protein Analysis

203

Amino Acids

23.48

Weight (kDa)

9.72

Isoelectric Point (pI)

49.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	105 - 174	1.8e-14	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	108 - 174	1.9e-13	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	114 - 173	1.9e-15	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g11880 FvH4_7g11880 FvH4_7g11880 FvH4_7g11880 FvH4_7g11880 FvH4_7g11880
malus_domestica	MD02G1204200.v1.1 MD07G1121100.v1.1
prunus_persica	Prupe.2G145300_v2.0.a1 Prupe.2G145300_v2.0.a1 Prupe.2G145300_v2.0.a1
pyrus_communis	pycom02g16660
rosa_chinensis	RchiOBHm_Chr1g0350551
rosa_laevigata	RLG00000028476
rosa_multiflora	Rmu_sc0009041.1_g000005
rosa_roxburghii	Rroxscaffold_4G00304750
rosa_rugosa	Rorug01G0211800 Rorug01G0211900 Rorug01G0212000 Rorug01G0212100
rosa_samantha	Rh1AG226600 Rh1BG195100 Rh1CG211400 Rh1DG223300
rosa_wichuraiana	Rw1G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	122
AdeI	CACNNNGTG	1 cut(s)	210
AfaI	GTAC	3 cut(s)	65, 392, 398
AgeI	ACCGGT	1 cut(s)	403
AgsI	TTSAA	3 cut(s)	57, 196, 312
AjiI	CACGTC	1 cut(s)	87
AjnI	CCWGG	2 cut(s)	179, 206
AluBI	AGCT	5 cut(s)	177, 274, 293, 316, 342
AluI	AGCT	5 cut(s)	177, 274, 293, 316, 342
Alw21I	GWGCWC	2 cut(s)	324, 344
Alw26I	GTCTC	1 cut(s)	163
ApoI	RAATTY	1 cut(s)	122
ArsI	GACNNNNNNTTYG	2 cut(s)	71, 103
AsiGI	ACCGGT	1 cut(s)	403
Asp700I	GAANNNNTTC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	593
AsuHPI	GGTGA	3 cut(s)	196, 418, 500
AvaII	GGWCC	1 cut(s)	593
BanII	GRGCYC	1 cut(s)	344
BauI	CACGAG	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	3
Bbv12I	GWGCWC	2 cut(s)	324, 344
BccI	CCATC	3 cut(s)	150, 173, 479
BciT130I	CCWGG	2 cut(s)	181, 208
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	1 cut(s)	413
Bme1390I	CCNGG	2 cut(s)	181, 208
Bme18I	GGWCC	1 cut(s)	593
BmgBI	CACGTC	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	593
BmrFI	CCNGG	2 cut(s)	181, 208
BmrI	ACTGGG	1 cut(s)	184
BmuI	ACTGGG	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	3
BpmI	CTGGAG	2 cut(s)	163, 260
BsaJI	CCNNGG	1 cut(s)	258
BsaWI	WCCGGW	2 cut(s)	403, 472
Bse118I	RCCGGY	1 cut(s)	403
Bse1I	ACTGG	2 cut(s)	190, 338
BseBI	CCWGG	2 cut(s)	181, 208
BseDI	CCNNGG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	554
BseNI	ACTGG	2 cut(s)	190, 338
BseRI	GAGGAG	1 cut(s)	151
BseYI	CCCAGC	1 cut(s)	137
BshTI	ACCGGT	1 cut(s)	403
BsiHKAI	GWGCWC	2 cut(s)	324, 344
BsiSI	CCGG	2 cut(s)	404, 473
BsiWI	CGTACG	1 cut(s)	390
BsmAI	GTCTC	1 cut(s)	163
Bsp1286I	GDGCHC	2 cut(s)	324, 344
Bsp1407I	TGTACA	1 cut(s)	63
Bsp19I	CCATGG	1 cut(s)	258
BspCNI	CTCAG	1 cut(s)	553
BsrFI	RCCGGY	1 cut(s)	403
BsrGI	TGTACA	1 cut(s)	63
BsrI	ACTGG	2 cut(s)	190, 338
BssAI	RCCGGY	1 cut(s)	403
BssECI	CCNNGG	1 cut(s)	258
BssSI	CACGAG	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	258
Bst2BI	CACGAG	1 cut(s)	222
Bst2UI	CCWGG	2 cut(s)	181, 208
Bst4CI	ACNGT	2 cut(s)	26, 496
BstAUI	TGTACA	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	272
BstDEI	CTNAG	2 cut(s)	154, 540
BstDSI	CCRYGG	1 cut(s)	258
BstMAI	GTCTC	1 cut(s)	163
BstNI	CCWGG	2 cut(s)	181, 208
BstSCI	CCNGG	2 cut(s)	179, 206
BstV2I	GAAGAC	1 cut(s)	3
BtgI	CCRYGG	1 cut(s)	258
BtrI	CACGTC	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	22
Cac8I	GCNNGC	1 cut(s)	272
Cfr10I	RCCGGY	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	593
CseI	GACGC	1 cut(s)	437
CsiI	ACCWGGT	1 cut(s)	206
Csp6I	GTAC	3 cut(s)	64, 391, 397
CspAI	ACCGGT	1 cut(s)	403
CviAII	CATG	2 cut(s)	259, 345
CviJI	RGCY	8 cut(s)	141, 177, 274, 293, 316, 342, 385, 603
CviKI_1	RGCY	8 cut(s)	141, 177, 274, 293, 316, 342, 385, 603
CviQI	GTAC	3 cut(s)	64, 391, 397
DdeI	CTNAG	2 cut(s)	154, 540
DraIII	CACNNNGTG	1 cut(s)	210
Ecl136II	GAGCTC	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	344
Eco47I	GGWCC	1 cut(s)	593
Eco53kI	GAGCTC	1 cut(s)	342
EcoICRI	GAGCTC	1 cut(s)	342
EcoO109I	RGGNCCY	1 cut(s)	593
EcoRII	CCWGG	2 cut(s)	179, 206
EcoT14I	CCWWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	344
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	2 cut(s)	262, 348
FaiI	YATR	7 cut(s)	234, 260, 298, 346, 468, 513, 575
FatI	CATG	2 cut(s)	258, 344
FblI	GTMKAC	1 cut(s)	253
FriOI	GRGCYC	1 cut(s)	344
FspBI	CTAG	1 cut(s)	413
GsaI	CCCAGC	1 cut(s)	141
GsuI	CTGGAG	2 cut(s)	163, 260
HapII	CCGG	2 cut(s)	404, 473
HgaI	GACGC	1 cut(s)	437
Hin1II	CATG	2 cut(s)	262, 348
HincII	GTYRAC	1 cut(s)	254
HindII	GTYRAC	1 cut(s)	254
HindIII	AAGCTT	1 cut(s)	291
HinfI	GANTC	6 cut(s)	238, 263, 454, 506, 550, 586
HpaII	CCGG	2 cut(s)	404, 473
HphI	GGTGA	3 cut(s)	196, 418, 500
Hpy166II	GTNNAC	3 cut(s)	242, 254, 409
Hpy188I	TCNGA	3 cut(s)	30, 453, 505
Hpy188III	TCNNGA	4 cut(s)	96, 277, 437, 542
Hpy8I	GTNNAC	3 cut(s)	242, 254, 409
Hpy99I	CGWCG	2 cut(s)	10, 91
HpyCH4III	ACNGT	2 cut(s)	26, 496
HpyCH4IV	ACGT	1 cut(s)	86
HpyCH4V	TGCA	3 cut(s)	463, 515, 577
HpyF3I	CTNAG	2 cut(s)	154, 540
HpySE526I	ACGT	1 cut(s)	86
Hsp92II	CATG	2 cut(s)	262, 348
LmnI	GCTCC	2 cut(s)	182, 279
MabI	ACCWGGT	1 cut(s)	206
MaeI	CTAG	1 cut(s)	413
MaeII	ACGT	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	69, 488
MboII	GAAGA	5 cut(s)	3, 121, 137, 297, 300
MhlI	GDGCHC	2 cut(s)	324, 344
MluCI	AATT	2 cut(s)	122, 534
MlyI	GAGTC	3 cut(s)	247, 500, 595
MnlI	CCTC	4 cut(s)	25, 172, 468, 584
MroXI	GAANNNNTTC	1 cut(s)	200
MseI	TTAA	2 cut(s)	378, 432
MspI	CCGG	2 cut(s)	404, 473
MspR9I	CCNGG	2 cut(s)	181, 208
MvaI	CCWGG	2 cut(s)	181, 208
NcoI	CCATGG	1 cut(s)	258
NlaIII	CATG	2 cut(s)	262, 348
NmuCI	GTSAC	1 cut(s)	488
PcsI	WCGNNNNNNNCGW	2 cut(s)	14, 250
PdmI	GAANNNNTTC	1 cut(s)	200
PfeI	GAWTC	3 cut(s)	263, 454, 550
Pfl23II	CGTACG	1 cut(s)	390
PfoI	TCCNGGA	1 cut(s)	179
PinAI	ACCGGT	1 cut(s)	403
PleI	GAGTC	3 cut(s)	246, 500, 594
PpsI	GAGTC	3 cut(s)	246, 500, 594
PpuMI	RGGWCCY	1 cut(s)	593
Psp124BI	GAGCTC	1 cut(s)	344
Psp5II	RGGWCCY	1 cut(s)	593
Psp6I	CCWGG	2 cut(s)	179, 206
PspFI	CCCAGC	1 cut(s)	137
PspGI	CCWGG	2 cut(s)	179, 206
PspLI	CGTACG	1 cut(s)	390
PspPI	GGNCC	1 cut(s)	593
PspPPI	RGGWCCY	1 cut(s)	593
RsaI	GTAC	3 cut(s)	65, 392, 398
RsaNI	GTAC	3 cut(s)	64, 391, 397
SacI	GAGCTC	1 cut(s)	344
SalI	GTCGAC	1 cut(s)	252
SaqAI	TTAA	2 cut(s)	378, 432
Sau96I	GGNCC	1 cut(s)	593
SchI	GAGTC	3 cut(s)	247, 500, 595
ScrFI	CCNGG	2 cut(s)	181, 208
SduI	GDGCHC	2 cut(s)	324, 344
SexAI	ACCWGGT	1 cut(s)	206
SinI	GGWCC	1 cut(s)	593
Sse9I	AATT	2 cut(s)	122, 534
SspI	AATATT	1 cut(s)	519
SspMI	CTAG	1 cut(s)	413
SstI	GAGCTC	1 cut(s)	344
StyD4I	CCNGG	2 cut(s)	179, 206
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	2 cut(s)	26, 496
TaiI	ACGT	1 cut(s)	89
TaqI	TCGA	2 cut(s)	253, 589
TasI	AATT	2 cut(s)	122, 534
TatI	WGTACW	2 cut(s)	63, 396
TfiI	GAWTC	3 cut(s)	263, 454, 550
Tru1I	TTAA	2 cut(s)	378, 432
Tru9I	TTAA	2 cut(s)	378, 432
TscAI	CASTG	1 cut(s)	29
TseFI	GTSAC	1 cut(s)	488
Tsp45I	GTSAC	1 cut(s)	488
TspDTI	ATGAA	3 cut(s)	134, 285, 291
TspRI	CASTG	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	593
XapI	RAATTY	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	253
XmnI	GAANNNNTTC	1 cut(s)	200
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.