Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007528

Physical Location & Seq

Genomic Coordinates Forward (+)

30134543 .. 30135001

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0212100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGAACCACAAACCCAGCAACCAATCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAAGCGGAGCAGGTGGACTCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTATAGAGCAGGTTGAGAGGATCTATCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACATCTATTTTTGGTTCGTGAACCAAAGGGCTTGGGAGAAGCAGAAGAAGAAGTCCATTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGTTACCAATTGGAAACATGAGGATCAGTATATTAACTTTGGATCTTCTGCACCTGCTTCTGCTTCTTCCGCTGGTGTGATTGTCACGCCCCGGATTTTGAATGATAAATTCAAATCCGAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

GST_C_2 GST_C_3 GST_N_2 GST_N_3

Protein Analysis

152

Amino Acids

17.46

Weight (kDa)

9.46

Isoelectric Point (pI)

55.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	27 - 89	6e-08	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g11880 FvH4_7g11880 FvH4_7g11880 FvH4_7g11880 FvH4_7g11880 FvH4_7g11880
malus_domestica	MD02G1204200.v1.1 MD07G1121100.v1.1
prunus_persica	Prupe.2G145300_v2.0.a1 Prupe.2G145300_v2.0.a1 Prupe.2G145300_v2.0.a1
pyrus_communis	pycom02g16660
rosa_chinensis	RchiOBHm_Chr1g0350551
rosa_laevigata	RLG00000028476
rosa_multiflora	Rmu_sc0009041.1_g000005
rosa_roxburghii	Rroxscaffold_4G00304750
rosa_rugosa	Rorug01G0211800 Rorug01G0211900 Rorug01G0212000 Rorug01G0212100
rosa_samantha	Rh1AG226600 Rh1BG195100 Rh1CG211400 Rh1DG223300
rosa_wichuraiana	Rw1G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	78, 394
Acc36I	ACCTGC	3 cut(s)	78, 160, 394
AciI	CCGC	2 cut(s)	82, 402
AclWI	GGATC	3 cut(s)	188, 363, 382
AcsI	RAATTY	1 cut(s)	440
AfaI	GTAC	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	220, 433, 445
AluBI	AGCT	2 cut(s)	130, 193
AluI	AGCT	2 cut(s)	130, 193
AlwI	GGATC	3 cut(s)	188, 363, 382
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	440
AspS9I	GGNCC	1 cut(s)	153
AsuC2I	CCSGG	2 cut(s)	55, 424
AsuHPI	GGTGA	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	153
BaeGI	GKGCMC	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	220
BcnI	CCSGG	2 cut(s)	55, 424
BfmI	CTRYAG	2 cut(s)	102, 162
BfuAI	ACCTGC	3 cut(s)	78, 160, 394
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	2 cut(s)	55, 424
Bme18I	GGWCC	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	2 cut(s)	6, 155
BmrFI	CCNGG	2 cut(s)	55, 424
BpmI	CTGGAG	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	2 cut(s)	55, 424
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	422
Bse8I	GATNNNNATC	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	422
BseGI	GGATG	2 cut(s)	37, 292
BseJI	GATNNNNATC	1 cut(s)	116
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	366
BsiSI	CCGG	2 cut(s)	54, 424
BslFI	GGGAC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	6 cut(s)	106, 180, 210, 308, 355, 374
BspACI	CCGC	2 cut(s)	82, 402
BspLI	GGNNCC	2 cut(s)	6, 155
BspMI	ACCTGC	3 cut(s)	78, 160, 394
BspPI	GGATC	3 cut(s)	188, 363, 382
BssECI	CCNNGG	1 cut(s)	422
BssMI	GATC	6 cut(s)	106, 180, 210, 308, 355, 374
BstF5I	GGATG	2 cut(s)	37, 292
BstKTI	GATC	6 cut(s)	109, 183, 213, 311, 358, 377
BstMBI	GATC	6 cut(s)	106, 180, 210, 308, 355, 374
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 401
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	2 cut(s)	53, 422
BstSFI	CTRYAG	2 cut(s)	102, 162
BstSLI	GKGCMC	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	62
BstX2I	RGATCY	2 cut(s)	180, 374
BstYI	RGATCY	2 cut(s)	180, 374
BtsCI	GGATG	2 cut(s)	37, 292
BveI	ACCTGC	3 cut(s)	78, 160, 394
Cfr13I	GGNCC	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	4 cut(s)	70, 293, 301, 350
CviJI	RGCY	5 cut(s)	53, 130, 193, 254, 316
CviKI_1	RGCY	5 cut(s)	53, 130, 193, 254, 316
CviQI	GTAC	1 cut(s)	202
DpnI	GATC	6 cut(s)	108, 182, 212, 310, 357, 376
DpnII	GATC	6 cut(s)	106, 180, 210, 308, 355, 374
Eco47I	GGWCC	1 cut(s)	153
EcoO109I	RGGNCCY	1 cut(s)	153
FaeI	CATG	4 cut(s)	73, 296, 304, 353
FaiI	YATR	6 cut(s)	71, 164, 294, 302, 351, 363
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	4 cut(s)	69, 292, 300, 349
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	2 cut(s)	44, 299
Fsp4HI	GCNGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	51
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	173
HapII	CCGG	2 cut(s)	54, 424
Hin1II	CATG	4 cut(s)	73, 296, 304, 353
HinfI	GANTC	2 cut(s)	94, 117
HpaII	CCGG	2 cut(s)	54, 424
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	2 cut(s)	93, 244
Hpy188I	TCNGA	3 cut(s)	111, 286, 451
Hpy188III	TCNNGA	2 cut(s)	220, 241
Hpy8I	GTNNAC	2 cut(s)	93, 244
HpyCH4V	TGCA	2 cut(s)	304, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 401
Hsp92II	CATG	4 cut(s)	73, 296, 304, 353
Kzo9I	GATC	6 cut(s)	106, 180, 210, 308, 355, 374
LmnI	GCTCC	2 cut(s)	84, 127
LpnPI	CCDG	9 cut(s)	29, 67, 73, 155, 203, 297, 390, 399, 437
Lsp1109I	GCAGC	1 cut(s)	62
MaeIII	GTNAC	2 cut(s)	334, 415
MalI	GATC	6 cut(s)	108, 182, 212, 310, 357, 376
MboI	GATC	6 cut(s)	106, 180, 210, 308, 355, 374
MboII	GAAGA	4 cut(s)	280, 283, 369, 390
MfeI	CAATTG	1 cut(s)	340
MflI	RGATCY	2 cut(s)	180, 374
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	2 cut(s)	340, 440
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	5 cut(s)	22, 29, 131, 171, 346
MseI	TTAA	1 cut(s)	366
MspA1I	CMGCKG	2 cut(s)	193, 404
MspI	CCGG	2 cut(s)	54, 424
MspR9I	CCNGG	2 cut(s)	55, 424
MunI	CAATTG	1 cut(s)	340
MwoI	GCNNNNNNNGC	2 cut(s)	79, 401
NciI	CCSGG	2 cut(s)	55, 424
NdeII	GATC	6 cut(s)	106, 180, 210, 308, 355, 374
NlaIII	CATG	4 cut(s)	73, 296, 304, 353
NlaIV	GGNNCC	2 cut(s)	6, 155
NmuCI	GTSAC	1 cut(s)	415
NspI	RCATGY	1 cut(s)	73
PaqCI	CACCTGC	2 cut(s)	78, 394
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	2 cut(s)	6, 155
PspPI	GGNCC	1 cut(s)	153
PspPPI	RGGWCCY	1 cut(s)	153
PsuI	RGATCY	2 cut(s)	180, 374
PvuII	CAGCTG	1 cut(s)	193
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	6 cut(s)	106, 180, 210, 308, 355, 374
Sau96I	GGNCC	1 cut(s)	153
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	2 cut(s)	55, 424
SduI	GDGCHC	1 cut(s)	300
SetI	ASST	7 cut(s)	92, 132, 155, 174, 195, 388, 458
SfcI	CTRYAG	2 cut(s)	102, 162
SinI	GGWCC	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	340, 440
SsiI	CCGC	2 cut(s)	82, 402
StyD4I	CCNGG	2 cut(s)	53, 422
TaqI	TCGA	2 cut(s)	27, 213
TasI	AATT	2 cut(s)	340, 440
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	153
XapI	RAATTY	1 cut(s)	440
XceI	RCATGY	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.