Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0007528

Physical Location & Seq

Genomic Coordinates Reverse (-)

45612447 .. 45617957

Gene Structure 5511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG211400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGAAATTCTACCACAATCCCAGCCATCTTCACTCCTTAGTCTCCTCCATCATCAAAAGCTCCAAGAGAACCCAGTTGAACAACTTCACCAGATGCTTCACTACTCGTGTCGGGTTCGAGAGTCCACGCACAAGTCGACCCATGGATTCCAGCAAGCACCAGGAAAATACAGAAGCTTCGTATTCATCTTCTTCAAAGCTGGTGCTCTATTCCTACTGGCAGAGCTCATGCTCTTGGCGAGTTCGCTTCGCTCTAAACCTTAAAGGGCTTTCGTACGAGTACAAACCGGTGAACCTAGCGAAAGGAGAGCAGTTTAATCCAGACTTTGAGCATCTGAATCCTCTGCATTATGTTCCGGTGTTGGTTGATGGTGACACCGTGATTTCGGACTCCTATGCAATATTTCTGTATCTGGAGGAGAAGTACCCTCAGAGACCGTTATTGCCTGCTGACCCTCGGCTAAAAGCTCTTAACCTCCAGGGTGCAAGCATTATCAGCTCTAGTATACAGCCTCTCCACATGCTATCAATGCTGAAGTACATTGAGGAAAAGATTGGTCCTGAAGAGAGCCTGTCATGGGCTCAATTGCATATAGAAAAAGGTTTCTGTGGTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

GST_C_2 GST_C_3 GST_N_2 GST_N_3

Protein Analysis

205

Amino Acids

23.51

Weight (kDa)

8.35

Isoelectric Point (pI)

50.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	66 - 139	1.6e-16	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	69 - 146	6.7e-18	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	75 - 140	1.8e-17	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g11880 FvH4_7g11880 FvH4_7g11880 FvH4_7g11880 FvH4_7g11880 FvH4_7g11880
malus_domestica	MD02G1204200.v1.1 MD07G1121100.v1.1
prunus_persica	Prupe.2G145300_v2.0.a1 Prupe.2G145300_v2.0.a1 Prupe.2G145300_v2.0.a1
pyrus_communis	pycom02g16660
rosa_chinensis	RchiOBHm_Chr1g0350551
rosa_laevigata	RLG00000028476
rosa_multiflora	Rmu_sc0009041.1_g000005
rosa_roxburghii	Rroxscaffold_4G00304750
rosa_rugosa	Rorug01G0211800 Rorug01G0211900 Rorug01G0212000 Rorug01G0212100
rosa_samantha	Rh1AG226600 Rh1BG195100 Rh1CG211400 Rh1DG223300
rosa_wichuraiana	Rw1G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	136, 505
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	2 cut(s)	554, 582
AfaI	GTAC	4 cut(s)	275, 281, 425, 539
AfiI	CCNNNNNNNGG	1 cut(s)	577
AgeI	ACCGGT	1 cut(s)	286
AgsI	TTSAA	2 cut(s)	79, 195
AjnI	CCWGG	2 cut(s)	159, 477
AluBI	AGCT	6 cut(s)	60, 176, 199, 225, 467, 498
AluI	AGCT	6 cut(s)	60, 176, 199, 225, 467, 498
Alw21I	GWGCWC	2 cut(s)	207, 227
Alw26I	GTCTC	2 cut(s)	46, 427
ApoI	RAATTY	1 cut(s)	5
AsiGI	ACCGGT	1 cut(s)	286
Asp700I	GAANNNNTTC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	557
AsuHPI	GGTGA	3 cut(s)	79, 301, 383
AvaII	GGWCC	1 cut(s)	557
BanII	GRGCYC	2 cut(s)	227, 583
BauI	CACGAG	1 cut(s)	105
Bbv12I	GWGCWC	2 cut(s)	207, 227
BccI	CCATC	3 cut(s)	33, 56, 362
BciT130I	CCWGG	2 cut(s)	161, 479
BcoDI	GTCTC	2 cut(s)	46, 427
BfaI	CTAG	2 cut(s)	296, 501
Bme1390I	CCNGG	2 cut(s)	161, 479
Bme18I	GGWCC	1 cut(s)	557
BmgT120I	GGNCC	1 cut(s)	557
BmrFI	CCNGG	2 cut(s)	161, 479
BmrI	ACTGGG	1 cut(s)	67
BmsI	GCATC	2 cut(s)	83, 340
BmuI	ACTGGG	1 cut(s)	67
BpmI	CTGGAG	2 cut(s)	434, 461
BsaI	GGTCTC	1 cut(s)	427
BsaJI	CCNNGG	3 cut(s)	141, 455, 478
BsaWI	WCCGGW	2 cut(s)	286, 355
BsaXI	ACNNNNNCTCC	4 cut(s)	407, 437, 498, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	577
Bse118I	RCCGGY	1 cut(s)	286
Bse1I	ACTGG	2 cut(s)	73, 221
BseBI	CCWGG	2 cut(s)	161, 479
BseDI	CCNNGG	3 cut(s)	141, 455, 478
BseLI	CCNNNNNNNGG	1 cut(s)	577
BseMII	CTCAG	1 cut(s)	443
BseNI	ACTGG	2 cut(s)	73, 221
BseRI	GAGGAG	2 cut(s)	34, 431
BseYI	CCCAGC	1 cut(s)	20
BshTI	ACCGGT	1 cut(s)	286
BsiHKAI	GWGCWC	2 cut(s)	207, 227
BsiSI	CCGG	2 cut(s)	287, 356
BsiWI	CGTACG	1 cut(s)	273
BslI	CCNNNNNNNGG	1 cut(s)	577
BsmAI	GTCTC	2 cut(s)	46, 427
Bso31I	GGTCTC	1 cut(s)	427
Bsp1286I	GDGCHC	3 cut(s)	207, 227, 583
Bsp19I	CCATGG	1 cut(s)	141
BspCNI	CTCAG	1 cut(s)	442
BspTNI	GGTCTC	1 cut(s)	427
BsrFI	RCCGGY	1 cut(s)	286
BsrI	ACTGG	2 cut(s)	73, 221
BssAI	RCCGGY	1 cut(s)	286
BssECI	CCNNGG	3 cut(s)	141, 455, 478
BssNAI	GTATAC	1 cut(s)	506
BssSI	CACGAG	1 cut(s)	105
BssT1I	CCWWGG	1 cut(s)	141
Bst1107I	GTATAC	1 cut(s)	506
Bst2BI	CACGAG	1 cut(s)	105
Bst2UI	CCWGG	2 cut(s)	161, 479
Bst4CI	ACNGT	2 cut(s)	379, 438
Bst6I	CTCTTC	1 cut(s)	558
BstC8I	GCNNGC	3 cut(s)	155, 447, 487
BstDEI	CTNAG	2 cut(s)	37, 429
BstDSI	CCRYGG	1 cut(s)	141
BstMAI	GTCTC	2 cut(s)	46, 427
BstMWI	GCNNNNNNNGC	2 cut(s)	495, 529
BstNI	CCWGG	2 cut(s)	161, 479
BstNSI	RCATGY	1 cut(s)	523
BstSCI	CCNGG	2 cut(s)	159, 477
BstZ17I	GTATAC	1 cut(s)	506
BtgI	CCRYGG	1 cut(s)	141
Cac8I	GCNNGC	3 cut(s)	155, 447, 487
Cfr10I	RCCGGY	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	557
Csp6I	GTAC	4 cut(s)	274, 280, 424, 538
CspAI	ACCGGT	1 cut(s)	286
CviAII	CATG	4 cut(s)	142, 228, 520, 576
CviQI	GTAC	4 cut(s)	274, 280, 424, 538
DdeI	CTNAG	2 cut(s)	37, 429
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
Ecl136II	GAGCTC	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	141
Eco24I	GRGCYC	2 cut(s)	227, 583
Eco31I	GGTCTC	1 cut(s)	427
Eco47I	GGWCC	1 cut(s)	557
Eco53kI	GAGCTC	1 cut(s)	225
Eco57I	CTGAAG	2 cut(s)	554, 582
EcoICRI	GAGCTC	1 cut(s)	225
EcoRII	CCWGG	2 cut(s)	159, 477
EcoT14I	CCWWGG	1 cut(s)	141
EcoT38I	GRGCYC	2 cut(s)	227, 583
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	4 cut(s)	145, 231, 523, 579
FaiI	YATR	9 cut(s)	143, 229, 351, 396, 506, 521, 577, 591, 593
FatI	CATG	4 cut(s)	141, 227, 519, 575
FblI	GTMKAC	2 cut(s)	136, 505
FriOI	GRGCYC	2 cut(s)	227, 583
FspBI	CTAG	2 cut(s)	296, 501
GsaI	CCCAGC	1 cut(s)	24
GsuI	CTGGAG	2 cut(s)	434, 461
HapII	CCGG	2 cut(s)	287, 356
Hin1II	CATG	4 cut(s)	145, 231, 523, 579
HincII	GTYRAC	1 cut(s)	137
HindII	GTYRAC	1 cut(s)	137
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	4 cut(s)	121, 146, 337, 389
HpaII	CCGG	2 cut(s)	287, 356
HphI	GGTGA	3 cut(s)	79, 301, 383
Hpy166II	GTNNAC	4 cut(s)	125, 137, 292, 506
Hpy188I	TCNGA	3 cut(s)	336, 388, 432
Hpy188III	TCNNGA	4 cut(s)	118, 320, 413, 560
Hpy8I	GTNNAC	4 cut(s)	125, 137, 292, 506
HpyCH4III	ACNGT	2 cut(s)	379, 438
HpyCH4V	TGCA	4 cut(s)	346, 398, 485, 589
HpyF10VI	GCNNNNNNNGC	2 cut(s)	495, 529
HpyF3I	CTNAG	2 cut(s)	37, 429
Hsp92II	CATG	4 cut(s)	145, 231, 523, 579
LmnI	GCTCC	1 cut(s)	65
LweI	GCATC	2 cut(s)	83, 340
MaeI	CTAG	2 cut(s)	296, 501
MaeIII	GTNAC	1 cut(s)	371
MboII	GAAGA	4 cut(s)	20, 180, 183, 575
MfeI	CAATTG	1 cut(s)	584
MhlI	GDGCHC	3 cut(s)	207, 227, 583
MluCI	AATT	2 cut(s)	5, 584
MlyI	GAGTC	2 cut(s)	130, 383
MnlI	CCTC	8 cut(s)	55, 351, 409, 438, 465, 485, 522, 538
MroXI	GAANNNNTTC	1 cut(s)	83
MseI	TTAA	3 cut(s)	261, 315, 471
MspI	CCGG	2 cut(s)	287, 356
MspR9I	CCNGG	2 cut(s)	161, 479
MunI	CAATTG	1 cut(s)	584
MvaI	CCWGG	2 cut(s)	161, 479
MwoI	GCNNNNNNNGC	2 cut(s)	495, 529
NcoI	CCATGG	1 cut(s)	141
NlaIII	CATG	4 cut(s)	145, 231, 523, 579
NmeAIII	GCCGAG	1 cut(s)	436
NmuCI	GTSAC	1 cut(s)	371
NspI	RCATGY	1 cut(s)	523
PcsI	WCGNNNNNNNCGW	1 cut(s)	133
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	2 cut(s)	146, 337
Pfl23II	CGTACG	1 cut(s)	273
PinAI	ACCGGT	1 cut(s)	286
PleI	GAGTC	2 cut(s)	129, 383
PpsI	GAGTC	2 cut(s)	129, 383
Psp124BI	GAGCTC	1 cut(s)	227
Psp6I	CCWGG	2 cut(s)	159, 477
PspFI	CCCAGC	1 cut(s)	20
PspGI	CCWGG	2 cut(s)	159, 477
PspLI	CGTACG	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	557
RsaI	GTAC	4 cut(s)	275, 281, 425, 539
RsaNI	GTAC	4 cut(s)	274, 280, 424, 538
SacI	GAGCTC	1 cut(s)	227
SalI	GTCGAC	1 cut(s)	135
SaqAI	TTAA	3 cut(s)	261, 315, 471
Sau96I	GGNCC	1 cut(s)	557
SchI	GAGTC	2 cut(s)	130, 383
ScrFI	CCNGG	2 cut(s)	161, 479
SduI	GDGCHC	3 cut(s)	207, 227, 583
SfaNI	GCATC	2 cut(s)	83, 340
SinI	GGWCC	1 cut(s)	557
Sse9I	AATT	2 cut(s)	5, 584
SspI	AATATT	1 cut(s)	402
SspMI	CTAG	2 cut(s)	296, 501
SstI	GAGCTC	1 cut(s)	227
StyD4I	CCNGG	2 cut(s)	159, 477
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	379, 438
TaqI	TCGA	2 cut(s)	117, 136
TasI	AATT	2 cut(s)	5, 584
TatI	WGTACW	2 cut(s)	279, 537
TfiI	GAWTC	2 cut(s)	146, 337
Tru1I	TTAA	3 cut(s)	261, 315, 471
Tru9I	TTAA	3 cut(s)	261, 315, 471
TseFI	GTSAC	1 cut(s)	371
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	2 cut(s)	17, 174
VpaK11BI	GGWCC	1 cut(s)	557
XapI	RAATTY	1 cut(s)	5
XceI	RCATGY	1 cut(s)	523
XmiI	GTMKAC	2 cut(s)	136, 505
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	2 cut(s)	296, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.