Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0007528

Physical Location & Seq

Genomic Coordinates Reverse (-)

42706176 .. 42711396

Gene Structure 5221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G019580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGAAATTCTACCACAATCCCAGCCATCTTCACTCCTTGGTCTCCTCCATCATCAAAAGCTCCAAGAGAACCCAGTTGAACAACTTCACCAGATGCTTCACTACTCGTGTCGGGTTCGAGAGTCCACGCACAAAAGCTTCGTATTCATCTTCTTCAAAGCTGGTGCTCTATTCCTACTGGCAGAGCTCATGCTCTTGGCGAGTTCGCTTCGCTCTAAACCTGAAAGGGCTTTCGTATGAGTACAAACCGGTGAACCTAGCGAAAGGAGAGCAGTTTAATCCAGACTTTGAGCGTCTGAATCCTCTGCATTATGTTCCGGTGTTGGTTGATGGTGACACCGTGATTTCAGACTCCTATGCAATATTTCTGTATCTGGAGGAGAAGTACCCTCAGAGACCGTTATTTCCTGCTGACCCTCGGCTAAAAGCTCTTAACCTCCAGGCTGCAAGCATTATCAGCTCTAGTATACAGCCTCTCCACATGCTATCAATGCTGAAGGACATTGAGGAAAAGATTGGTCCTGAAGAGAGCCTGTCATGGGCTCAATTGCATATAGAAAAAGGTTTCTGTGCACTTGAGAAGTTGCTGAAGGATTTTGCTAGCAGATTTGCCACAGGAAATGAAGTGTATATGACTGACGTGTTCTTAGCACCACAGATTGCTATAGCTACAGGAAGGTTCAATATAAATATGTCCACATTCCCCAGTTTAAGTAGGGTGAATGAATCATACAAGGGTCTACCAGAATTCCAAGCTTCATCACCAGAAAGGCAACCTGATGCTGTGCATGGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

GST_C_2 GST_C_3 GST_N_2 GST_N_3

Protein Analysis

265

Amino Acids

30.13

Weight (kDa)

8.84

Isoelectric Point (pI)

51.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	53 - 126	9.6e-17	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	56 - 133	5.4e-18	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	62 - 127	5.2e-18	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g11880 FvH4_7g11880 FvH4_7g11880 FvH4_7g11880 FvH4_7g11880 FvH4_7g11880
malus_domestica	MD02G1204200.v1.1 MD07G1121100.v1.1
prunus_persica	Prupe.2G145300_v2.0.a1 Prupe.2G145300_v2.0.a1 Prupe.2G145300_v2.0.a1
pyrus_communis	pycom02g16660
rosa_chinensis	RchiOBHm_Chr1g0350551
rosa_laevigata	RLG00000028476
rosa_multiflora	Rmu_sc0009041.1_g000005
rosa_roxburghii	Rroxscaffold_4G00304750
rosa_rugosa	Rorug01G0211800 Rorug01G0211900 Rorug01G0212000 Rorug01G0212100
rosa_samantha	Rh1AG226600 Rh1BG195100 Rh1CG211400 Rh1DG223300
rosa_wichuraiana	Rw1G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	466, 739
AcsI	RAATTY	2 cut(s)	5, 746
AcuI	CTGAAG	3 cut(s)	515, 543, 608
AfaI	GTAC	2 cut(s)	242, 386
AfiI	CCNNNNNNNGG	1 cut(s)	538
AflIII	ACRYGT	1 cut(s)	639
AgeI	ACCGGT	1 cut(s)	247
AgsI	TTSAA	3 cut(s)	79, 156, 682
AjiI	CACGTC	1 cut(s)	640
AjnI	CCWGG	1 cut(s)	438
AluBI	AGCT	8 cut(s)	60, 137, 160, 186, 428, 459, 668, 755
AluI	AGCT	8 cut(s)	60, 137, 160, 186, 428, 459, 668, 755
Alw21I	GWGCWC	3 cut(s)	168, 188, 574
Alw26I	GTCTC	2 cut(s)	46, 388
Alw44I	GTGCAC	1 cut(s)	570
ApaLI	GTGCAC	1 cut(s)	570
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	2 cut(s)	5, 746
AsiGI	ACCGGT	1 cut(s)	247
Asp700I	GAANNNNTTC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	518
AsuHPI	GGTGA	5 cut(s)	79, 262, 344, 730, 753
AsuNHI	GCTAGC	1 cut(s)	599
AvaII	GGWCC	1 cut(s)	518
BaeGI	GKGCMC	1 cut(s)	574
BanII	GRGCYC	2 cut(s)	188, 544
BauI	CACGAG	1 cut(s)	105
Bbv12I	GWGCWC	3 cut(s)	168, 188, 574
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	3 cut(s)	33, 56, 323
BciT130I	CCWGG	1 cut(s)	440
BcoDI	GTCTC	2 cut(s)	46, 388
BfaI	CTAG	3 cut(s)	257, 462, 600
BfmI	CTRYAG	2 cut(s)	663, 669
BisI	GCNGC	1 cut(s)	444
BlsI	GCNGC	1 cut(s)	445
Bme1390I	CCNGG	1 cut(s)	440
Bme18I	GGWCC	1 cut(s)	518
BmgBI	CACGTC	1 cut(s)	640
BmgT120I	GGNCC	1 cut(s)	518
BmrFI	CCNGG	1 cut(s)	440
BmrI	ACTGGG	2 cut(s)	67, 699
BmsI	GCATC	2 cut(s)	83, 769
BmtI	GCTAGC	1 cut(s)	603
BmuI	ACTGGG	2 cut(s)	67, 699
BpmI	CTGGAG	2 cut(s)	395, 422
BpuEI	CTTGAG	1 cut(s)	596
BsaI	GGTCTC	2 cut(s)	46, 388
BsaJI	CCNNGG	2 cut(s)	36, 416
BsaWI	WCCGGW	2 cut(s)	247, 316
BsaXI	ACNNNNNCTCC	4 cut(s)	368, 398, 459, 489
Bsc4I	CCNNNNNNNGG	1 cut(s)	538
Bse118I	RCCGGY	1 cut(s)	247
Bse1I	ACTGG	3 cut(s)	73, 182, 705
BseBI	CCWGG	1 cut(s)	440
BseDI	CCNNGG	2 cut(s)	36, 416
BseLI	CCNNNNNNNGG	1 cut(s)	538
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	3 cut(s)	73, 182, 705
BseRI	GAGGAG	2 cut(s)	34, 392
BseSI	GKGCMC	1 cut(s)	574
BseXI	GCAGC	1 cut(s)	430
BseYI	CCCAGC	1 cut(s)	20
BshTI	ACCGGT	1 cut(s)	247
BsiHKAI	GWGCWC	3 cut(s)	168, 188, 574
BsiSI	CCGG	2 cut(s)	248, 317
BslI	CCNNNNNNNGG	1 cut(s)	538
BsmAI	GTCTC	2 cut(s)	46, 388
Bso31I	GGTCTC	2 cut(s)	46, 388
Bsp1286I	GDGCHC	4 cut(s)	168, 188, 544, 574
BspCNI	CTCAG	1 cut(s)	403
BspOI	GCTAGC	1 cut(s)	603
BspTNI	GGTCTC	2 cut(s)	46, 388
BsrFI	RCCGGY	1 cut(s)	247
BsrI	ACTGG	3 cut(s)	73, 182, 705
BssAI	RCCGGY	1 cut(s)	247
BssECI	CCNNGG	2 cut(s)	36, 416
BssNAI	GTATAC	1 cut(s)	467
BssSI	CACGAG	1 cut(s)	105
BssT1I	CCWWGG	1 cut(s)	36
Bst1107I	GTATAC	1 cut(s)	467
Bst2BI	CACGAG	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	440
Bst4CI	ACNGT	2 cut(s)	340, 399
Bst6I	CTCTTC	1 cut(s)	519
BstC8I	GCNNGC	2 cut(s)	448, 601
BstDEI	CTNAG	2 cut(s)	390, 646
BstMAI	GTCTC	2 cut(s)	46, 388
BstMWI	GCNNNNNNNGC	2 cut(s)	456, 490
BstNI	CCWGG	1 cut(s)	440
BstNSI	RCATGY	1 cut(s)	484
BstSCI	CCNGG	1 cut(s)	438
BstSFI	CTRYAG	2 cut(s)	663, 669
BstSLI	GKGCMC	1 cut(s)	574
BstV1I	GCAGC	1 cut(s)	430
BstZ17I	GTATAC	1 cut(s)	467
BtrI	CACGTC	1 cut(s)	640
Cac8I	GCNNGC	2 cut(s)	448, 601
Cfr10I	RCCGGY	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	518
CseI	GACGC	1 cut(s)	281
Csp6I	GTAC	2 cut(s)	241, 385
CspAI	ACCGGT	1 cut(s)	247
CviAII	CATG	4 cut(s)	189, 481, 537, 788
CviQI	GTAC	2 cut(s)	241, 385
DdeI	CTNAG	2 cut(s)	390, 646
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
Ecl136II	GAGCTC	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	36
Eco24I	GRGCYC	2 cut(s)	188, 544
Eco31I	GGTCTC	2 cut(s)	46, 388
Eco47I	GGWCC	1 cut(s)	518
Eco53kI	GAGCTC	1 cut(s)	186
Eco57I	CTGAAG	3 cut(s)	515, 543, 608
EcoICRI	GAGCTC	1 cut(s)	186
EcoRI	GAATTC	1 cut(s)	746
EcoRII	CCWGG	1 cut(s)	438
EcoT14I	CCWWGG	1 cut(s)	36
EcoT38I	GRGCYC	2 cut(s)	188, 544
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	4 cut(s)	192, 484, 540, 791
FatI	CATG	4 cut(s)	188, 480, 536, 787
FblI	GTMKAC	2 cut(s)	466, 739
Fnu4HI	GCNGC	1 cut(s)	444
FriOI	GRGCYC	2 cut(s)	188, 544
Fsp4HI	GCNGC	1 cut(s)	444
FspBI	CTAG	3 cut(s)	257, 462, 600
GluI	GCNGC	1 cut(s)	444
GsaI	CCCAGC	1 cut(s)	24
GsuI	CTGGAG	2 cut(s)	395, 422
HapII	CCGG	2 cut(s)	248, 317
HgaI	GACGC	1 cut(s)	281
Hin1II	CATG	4 cut(s)	192, 484, 540, 791
HindIII	AAGCTT	2 cut(s)	135, 753
HinfI	GANTC	4 cut(s)	121, 298, 350, 725
HpaII	CCGG	2 cut(s)	248, 317
HphI	GGTGA	5 cut(s)	79, 262, 344, 730, 753
Hpy166II	GTNNAC	6 cut(s)	125, 253, 467, 572, 696, 740
Hpy188I	TCNGA	3 cut(s)	297, 349, 393
Hpy188III	TCNNGA	4 cut(s)	118, 281, 374, 521
Hpy8I	GTNNAC	6 cut(s)	125, 253, 467, 572, 696, 740
HpyAV	CCTTC	3 cut(s)	490, 583, 669
HpyCH4III	ACNGT	2 cut(s)	340, 399
HpyCH4IV	ACGT	1 cut(s)	639
HpyCH4V	TGCA	6 cut(s)	307, 359, 446, 550, 572, 787
HpyF10VI	GCNNNNNNNGC	2 cut(s)	456, 490
HpyF3I	CTNAG	2 cut(s)	390, 646
HpySE526I	ACGT	1 cut(s)	639
Hsp92II	CATG	4 cut(s)	192, 484, 540, 791
LmnI	GCTCC	1 cut(s)	65
Lsp1109I	GCAGC	1 cut(s)	430
LweI	GCATC	2 cut(s)	83, 769
MaeI	CTAG	3 cut(s)	257, 462, 600
MaeII	ACGT	1 cut(s)	639
MaeIII	GTNAC	1 cut(s)	332
MboII	GAAGA	4 cut(s)	20, 141, 144, 536
MfeI	CAATTG	1 cut(s)	545
MhlI	GDGCHC	4 cut(s)	168, 188, 544, 574
MluCI	AATT	3 cut(s)	5, 545, 746
MlyI	GAGTC	2 cut(s)	130, 344
MnlI	CCTC	8 cut(s)	55, 312, 370, 399, 426, 446, 483, 499
MroXI	GAANNNNTTC	1 cut(s)	83
MseI	TTAA	3 cut(s)	276, 432, 710
MspI	CCGG	2 cut(s)	248, 317
MspR9I	CCNGG	1 cut(s)	440
MunI	CAATTG	1 cut(s)	545
MvaI	CCWGG	1 cut(s)	440
MwoI	GCNNNNNNNGC	2 cut(s)	456, 490
NheI	GCTAGC	1 cut(s)	599
NlaIII	CATG	4 cut(s)	192, 484, 540, 791
NmeAIII	GCCGAG	1 cut(s)	397
NmuCI	GTSAC	1 cut(s)	332
NspI	RCATGY	1 cut(s)	484
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	2 cut(s)	298, 725
PinAI	ACCGGT	1 cut(s)	247
PkrI	GCNGC	1 cut(s)	445
PleI	GAGTC	2 cut(s)	129, 344
PpsI	GAGTC	2 cut(s)	129, 344
Psp124BI	GAGCTC	1 cut(s)	188
Psp6I	CCWGG	1 cut(s)	438
PspFI	CCCAGC	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	438
PspPI	GGNCC	1 cut(s)	518
RsaI	GTAC	2 cut(s)	242, 386
RsaNI	GTAC	2 cut(s)	241, 385
SacI	GAGCTC	1 cut(s)	188
SaqAI	TTAA	3 cut(s)	276, 432, 710
SatI	GCNGC	1 cut(s)	444
Sau96I	GGNCC	1 cut(s)	518
SchI	GAGTC	2 cut(s)	130, 344
ScrFI	CCNGG	1 cut(s)	440
SduI	GDGCHC	4 cut(s)	168, 188, 544, 574
SfaNI	GCATC	2 cut(s)	83, 769
SfcI	CTRYAG	2 cut(s)	663, 669
SinI	GGWCC	1 cut(s)	518
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
Sse9I	AATT	3 cut(s)	5, 545, 746
SspI	AATATT	1 cut(s)	363
SspMI	CTAG	3 cut(s)	257, 462, 600
SstI	GAGCTC	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	438
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	340, 399
TaiI	ACGT	1 cut(s)	642
TaqI	TCGA	1 cut(s)	117
TasI	AATT	3 cut(s)	5, 545, 746
TatI	WGTACW	1 cut(s)	240
TfiI	GAWTC	2 cut(s)	298, 725
Tru1I	TTAA	3 cut(s)	276, 432, 710
Tru9I	TTAA	3 cut(s)	276, 432, 710
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	1 cut(s)	443
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	5 cut(s)	17, 135, 636, 738, 747
VneI	GTGCAC	1 cut(s)	570
VpaK11BI	GGWCC	1 cut(s)	518
XapI	RAATTY	2 cut(s)	5, 746
XceI	RCATGY	1 cut(s)	484
XmiI	GTMKAC	2 cut(s)	466, 739
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	3 cut(s)	257, 462, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.