FvH4_7g15590

ABIL1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0004948
Physical Location & Seq
Forward (+)
13465427 .. 13468861
3435 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g15590.t4

Sequence Viewer

Length: 900 bp
ATGGAGTTGGAGCAATCCCGGCCGGCCATGACCTTCGACGAGGTCTCCATGGAGCGCAGCAAAAGCTTCGTCAAGGCCTTACAGGAACTCAAGAACTTGAGGCCTCAGCTTTACTCTGCTGCGGAATATTGTGAAAAGTCGTATCTTCATAGCGAGCAGAAACAAATGGTACTGGATAACCTGAAAGATTATGCTGTACGAGCCCTTGTTAATGCTGTTGATCACCTTGGTACTGTGGCCTACAAGTTAACTGACCTTCTTGACCAGCAAACCTTAGATGTCTCAACGATGGACCTGAAAGTTACTTGCCTTAACCAGAAACTTTTTACATGCAAAACATTCATGGATAAAGAAGGTGCAAGGCAGCAGCAGCTGTTGCCATTCATCCCAAGACATCACAAGCACTATATTTTACCCAATTCTGTCAATAAGAAGGTACATTTCAGTCCACATGTACAGACTGATACTAGGCAACATGCTTATCAAGCAAGACCACATGTTCAACCGTCAAGCGCCGCTGCATCAAAAACTCTTTCCTGGCATTTAGCTTCAGAAACAAAGTCAACCTTGAAGGGGACTTCGCAGGCTCTGGCTAGCTCTGCAGACACTAAAATATCTGTAAATACATCAGGTGTTTTCCAGCTTTTAGATAATGAGGGGACTGCCACTACAAAATCCTCAGGAGCTCATCTGCAGCTACCTAGTCGAGTTCCTGGTTCTGAATCATTCGTTGCTGGACATAGGGATGCGGTAGATGGATACAGGCCACTGGGAGCGGCCAGGTCATTTGACAACCAAAATCGACAGATCGTGCGAGTTCCTGTTCGCAGTAAAAGTCTGCTATCAGCTTTCTTTGTCAAACAGAAAAGCACAAAACTGAAGACTGGGTCAGTCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

300

Amino Acids

33.32

Weight (kDa)

9.56

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 776
AciI CCGC 4 cut(s) 122, 516, 749, 776
AcoI YGGCCR 3 cut(s) 20, 24, 777
AcuI CTGAAG 2 cut(s) 534, 899
AfaI GTAC 5 cut(s) 171, 198, 232, 438, 456
AfiI CCNNNNNNNGG 1 cut(s) 573
AflIII ACRYGT 2 cut(s) 451, 496
AgsI TTSAA 2 cut(s) 503, 571
AjnI CCWGG 3 cut(s) 536, 712, 779
AluBI AGCT 9 cut(s) 66, 109, 373, 548, 597, 643, 686, 697, 848
AluI AGCT 9 cut(s) 66, 109, 373, 548, 597, 643, 686, 697, 848
Alw21I GWGCWC 1 cut(s) 688
Alw26I GTCTC 2 cut(s) 49, 286
AlwNI CAGNNNCTG 2 cut(s) 373, 589
AoxI GGCC 7 cut(s) 20, 24, 75, 101, 237, 764, 777
ApeKI GCWGC 7 cut(s) 57, 119, 364, 367, 370, 518, 694
ArsI GACNNNNNNTTYG 2 cut(s) 54, 86
AspLEI GCGC 2 cut(s) 57, 515
AspS9I GGNCC 1 cut(s) 292
AsuC2I CCSGG 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 215
AsuNHI GCTAGC 1 cut(s) 593
AvaII GGWCC 1 cut(s) 292
AxyI CCTNAGG 1 cut(s) 679
BanII GRGCYC 2 cut(s) 205, 688
BbsI GAAGAC 1 cut(s) 887
Bbv12I GWGCWC 1 cut(s) 688
BbvCI CCTCAGC 1 cut(s) 105
BbvI GCAGC 7 cut(s) 69, 106, 376, 379, 382, 505, 706
BccI CCATC 2 cut(s) 283, 749
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BciT130I CCWGG 3 cut(s) 538, 714, 781
BciVI GTATCC 1 cut(s) 752
BclI TGATCA 1 cut(s) 220
BcnI CCSGG 1 cut(s) 19
BcoDI GTCTC 2 cut(s) 49, 286
BfaI CTAG 3 cut(s) 468, 594, 702
BfmI CTRYAG 2 cut(s) 600, 692
BfoI RGCGCY 1 cut(s) 516
BfuI GTATCC 1 cut(s) 752
BisI GCNGC 9 cut(s) 58, 120, 365, 368, 371, 516, 519, 695, 777
BlsI GCNGC 9 cut(s) 59, 121, 366, 369, 372, 517, 520, 696, 778
Bme1390I CCNGG 4 cut(s) 19, 538, 714, 781
Bme18I GGWCC 1 cut(s) 292
BmgT120I GGNCC 1 cut(s) 292
BmrFI CCNGG 4 cut(s) 19, 538, 714, 781
BmrI ACTGGG 2 cut(s) 779, 894
BmsI GCATC 2 cut(s) 530, 736
BmtI GCTAGC 1 cut(s) 597
BmuI ACTGGG 2 cut(s) 779, 894
BpiI GAAGAC 1 cut(s) 887
Bpu10I CCTNAGC 1 cut(s) 105
BpuEI CTTGAG 2 cut(s) 74, 118
BpuMI CCSGG 1 cut(s) 19
BsaI GGTCTC 1 cut(s) 49
BsaJI CCNNGG 2 cut(s) 48, 226
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 1 cut(s) 573
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 3 cut(s) 177, 774, 889
Bse21I CCTNAGG 1 cut(s) 679
BseBI CCWGG 3 cut(s) 538, 714, 781
BseDI CCNNGG 2 cut(s) 48, 226
BseGI GGATG 2 cut(s) 384, 751
BseLI CCNNNNNNNGG 1 cut(s) 573
BseMII CTCAG 2 cut(s) 119, 693
BseNI ACTGG 3 cut(s) 177, 774, 889
BseX3I CGGCCG 1 cut(s) 20
BseXI GCAGC 7 cut(s) 69, 106, 376, 379, 382, 505, 706
Bsh1285I CGRYCG 1 cut(s) 23
BshFI GGCC 7 cut(s) 22, 26, 77, 103, 239, 766, 779
BsiEI CGRYCG 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 688
BsiSI CCGG 2 cut(s) 19, 23
BslFI GGGAC 2 cut(s) 589, 673
BslI CCNNNNNNNGG 1 cut(s) 573
BsmAI GTCTC 2 cut(s) 49, 286
BsmFI GGGAC 2 cut(s) 589, 673
BsnI GGCC 7 cut(s) 22, 26, 77, 103, 239, 766, 779
Bso31I GGTCTC 1 cut(s) 49
Bsp1286I GDGCHC 2 cut(s) 205, 688
Bsp1407I TGTACA 1 cut(s) 454
Bsp143I GATC 2 cut(s) 220, 807
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 4 cut(s) 122, 516, 749, 776
BspANI GGCC 7 cut(s) 22, 26, 77, 103, 239, 766, 779
BspCNI CTCAG 2 cut(s) 118, 692
BspMAI CTGCAG 2 cut(s) 604, 696
BspOI GCTAGC 1 cut(s) 597
BspTNI GGTCTC 1 cut(s) 49
BsrBI CCGCTC 1 cut(s) 776
BsrFI RCCGGY 1 cut(s) 22
BsrGI TGTACA 1 cut(s) 454
BsrI ACTGG 3 cut(s) 177, 774, 889
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 2 cut(s) 48, 226
BssMI GATC 2 cut(s) 220, 807
BssT1I CCWWGG 2 cut(s) 48, 226
Bst2UI CCWGG 3 cut(s) 538, 714, 781
Bst4CI ACNGT 2 cut(s) 235, 507
BstAPI GCANNNNNTGC 1 cut(s) 376
BstAUI TGTACA 1 cut(s) 454
BstC8I GCNNGC 4 cut(s) 24, 155, 585, 595
BstDEI CTNAG 3 cut(s) 105, 274, 679
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 2 cut(s) 384, 751
BstH2I RGCGCY 1 cut(s) 516
BstHHI GCGC 2 cut(s) 57, 515
BstKTI GATC 2 cut(s) 223, 810
BstMAI GTCTC 2 cut(s) 49, 286
BstMBI GATC 2 cut(s) 220, 807
BstMCI CGRYCG 1 cut(s) 23
BstMWI GCNNNNNNNGC 7 cut(s) 19, 63, 200, 370, 376, 485, 599
BstNI CCWGG 3 cut(s) 538, 714, 781
BstNSI RCATGY 4 cut(s) 333, 455, 479, 500
BstSCI CCNGG 4 cut(s) 17, 536, 712, 779
BstSFI CTRYAG 2 cut(s) 600, 692
BstV1I GCAGC 7 cut(s) 69, 106, 376, 379, 382, 505, 706
BstV2I GAAGAC 1 cut(s) 887
BstZI CGGCCG 1 cut(s) 20
Bsu36I CCTNAGG 1 cut(s) 679
BsuI GTATCC 1 cut(s) 752
BsuRI GGCC 7 cut(s) 22, 26, 77, 103, 239, 766, 779
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 2 cut(s) 384, 751
BtsIMutI CAGTG 1 cut(s) 767
Cac8I GCNNGC 4 cut(s) 24, 155, 585, 595
CaiI CAGNNNCTG 2 cut(s) 373, 589
CfoI GCGC 2 cut(s) 57, 515
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 292
Csp6I GTAC 5 cut(s) 170, 197, 231, 437, 455
CviAII CATG 7 cut(s) 28, 49, 330, 343, 452, 476, 497
CviQI GTAC 5 cut(s) 170, 197, 231, 437, 455
DdeI CTNAG 3 cut(s) 105, 274, 679
DpnI GATC 2 cut(s) 222, 809
DpnII GATC 2 cut(s) 220, 807
EaeI YGGCCR 3 cut(s) 20, 24, 777
EagI CGGCCG 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 686
EclXI CGGCCG 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 48, 226
Eco147I AGGCCT 2 cut(s) 77, 103
Eco24I GRGCYC 2 cut(s) 205, 688
Eco31I GGTCTC 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 292
Eco52I CGGCCG 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 686
Eco57I CTGAAG 2 cut(s) 534, 899
Eco81I CCTNAGG 1 cut(s) 679
EcoICRI GAGCTC 1 cut(s) 686
EcoRII CCWGG 3 cut(s) 536, 712, 779
EcoT14I CCWWGG 2 cut(s) 48, 226
EcoT38I GRGCYC 2 cut(s) 205, 688
ErhI CCWWGG 2 cut(s) 48, 226
FaeI CATG 7 cut(s) 31, 52, 333, 346, 455, 479, 500
FalI AAGNNNNNCTT 2 cut(s) 551, 583
FaqI GGGAC 2 cut(s) 589, 673
FatI CATG 7 cut(s) 27, 48, 329, 342, 451, 475, 496
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 9 cut(s) 58, 120, 365, 368, 371, 516, 519, 695, 777
FokI GGATG 2 cut(s) 371, 758
FriOI GRGCYC 2 cut(s) 205, 688
FseI GGCCGGCC 1 cut(s) 26
Fsp4HI GCNGC 9 cut(s) 58, 120, 365, 368, 371, 516, 519, 695, 777
FspBI CTAG 3 cut(s) 468, 594, 702
GlaI GCGC 2 cut(s) 56, 514
GluI GCNGC 9 cut(s) 58, 120, 365, 368, 371, 516, 519, 695, 777
HaeII RGCGCY 1 cut(s) 516
HaeIII GGCC 7 cut(s) 22, 26, 77, 103, 239, 766, 779
HapII CCGG 2 cut(s) 19, 23
HhaI GCGC 2 cut(s) 57, 515
Hin1II CATG 7 cut(s) 31, 52, 333, 346, 455, 479, 500
Hin6I GCGC 2 cut(s) 55, 513
HinP1I GCGC 2 cut(s) 55, 513
HincII GTYRAC 2 cut(s) 249, 564
HindII GTYRAC 2 cut(s) 249, 564
HindIII AAGCTT 1 cut(s) 64
HinfI GANTC 1 cut(s) 722
HpaI GTTAAC 1 cut(s) 249
HpaII CCGG 2 cut(s) 19, 23
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 3 cut(s) 249, 449, 564
Hpy188I TCNGA 2 cut(s) 553, 721
Hpy188III TCNNGA 4 cut(s) 91, 260, 681, 897
Hpy8I GTNNAC 3 cut(s) 249, 449, 564
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 5 cut(s) 43, 266, 347, 427, 565
HpyCH4III ACNGT 2 cut(s) 235, 507
HpyCH4V TGCA 5 cut(s) 333, 359, 521, 602, 694
HpyF10VI GCNNNNNNNGC 7 cut(s) 19, 63, 200, 370, 376, 485, 599
HpyF3I CTNAG 3 cut(s) 105, 274, 679
Hsp92II CATG 7 cut(s) 31, 52, 333, 346, 455, 479, 500
HspAI GCGC 2 cut(s) 55, 513
KroI GCCGGC 1 cut(s) 22
KroNI GCCGGC 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 220
KspAI GTTAAC 1 cut(s) 249
Kzo9I GATC 2 cut(s) 220, 807
LmnI GCTCC 4 cut(s) 10, 52, 683, 773
Lsp1109I GCAGC 7 cut(s) 69, 106, 376, 379, 382, 505, 706
LweI GCATC 2 cut(s) 530, 736
MaeI CTAG 3 cut(s) 468, 594, 702
MaeIII GTNAC 1 cut(s) 301
MalI GATC 2 cut(s) 222, 809
MbiI CCGCTC 1 cut(s) 776
MboI GATC 2 cut(s) 220, 807
MboII GAAGA 2 cut(s) 137, 892
MhlI GDGCHC 2 cut(s) 205, 688
MluCI AATT 1 cut(s) 418
MnlI CCTC 5 cut(s) 34, 93, 114, 649, 688
MroNI GCCGGC 1 cut(s) 22
MseI TTAA 3 cut(s) 210, 248, 312
MslI CAYNNNNRTG 1 cut(s) 744
MspA1I CMGCKG 2 cut(s) 373, 518
MspI CCGG 2 cut(s) 19, 23
MspR9I CCNGG 4 cut(s) 19, 538, 714, 781
MvaI CCWGG 3 cut(s) 538, 714, 781
MwoI GCNNNNNNNGC 7 cut(s) 19, 63, 200, 370, 376, 485, 599
NaeI GCCGGC 1 cut(s) 24
NciI CCSGG 1 cut(s) 19
NcoI CCATGG 1 cut(s) 48
NdeII GATC 2 cut(s) 220, 807
NgoMIV GCCGGC 1 cut(s) 22
NheI GCTAGC 1 cut(s) 593
NlaIII CATG 7 cut(s) 31, 52, 333, 346, 455, 479, 500
NspI RCATGY 4 cut(s) 333, 455, 479, 500
PceI AGGCCT 2 cut(s) 77, 103
PciI ACATGT 2 cut(s) 451, 496
PdiI GCCGGC 1 cut(s) 24
PfeI GAWTC 1 cut(s) 722
PflFI GACNNNGTC 2 cut(s) 41, 886
PkrI GCNGC 9 cut(s) 59, 121, 366, 369, 372, 517, 520, 696, 778
PscI ACATGT 2 cut(s) 451, 496
Psp124BI GAGCTC 1 cut(s) 688
Psp6I CCWGG 3 cut(s) 536, 712, 779
PspGI CCWGG 3 cut(s) 536, 712, 779
PspPI GGNCC 1 cut(s) 292
PstI CTGCAG 2 cut(s) 604, 696
PstNI CAGNNNCTG 2 cut(s) 373, 589
PsyI GACNNNGTC 2 cut(s) 41, 886
PvuII CAGCTG 1 cut(s) 373
RigI GGCCGGCC 1 cut(s) 26
RsaI GTAC 5 cut(s) 171, 198, 232, 438, 456
RsaNI GTAC 5 cut(s) 170, 197, 231, 437, 455
RseI CAYNNNNRTG 1 cut(s) 744
SacI GAGCTC 1 cut(s) 688
SaqAI TTAA 3 cut(s) 210, 248, 312
SatI GCNGC 9 cut(s) 58, 120, 365, 368, 371, 516, 519, 695, 777
Sau3AI GATC 2 cut(s) 220, 807
Sau96I GGNCC 1 cut(s) 292
ScrFI CCNGG 4 cut(s) 19, 538, 714, 781
SduI GDGCHC 2 cut(s) 205, 688
SfaNI GCATC 2 cut(s) 530, 736
SfcI CTRYAG 2 cut(s) 600, 692
SinI GGWCC 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 744
SmlI CTYRAG 2 cut(s) 89, 97
SmoI CTYRAG 2 cut(s) 89, 97
Sse9I AATT 1 cut(s) 418
SseBI AGGCCT 2 cut(s) 77, 103
SsiI CCGC 4 cut(s) 122, 516, 749, 776
SspI AATATT 1 cut(s) 128
SspMI CTAG 3 cut(s) 468, 594, 702
SstI GAGCTC 1 cut(s) 688
StuI AGGCCT 2 cut(s) 77, 103
StyD4I CCNGG 4 cut(s) 17, 536, 712, 779
StyI CCWWGG 2 cut(s) 48, 226
TaaI ACNGT 2 cut(s) 235, 507
TaqI TCGA 3 cut(s) 36, 706, 802
TasI AATT 1 cut(s) 418
TatI WGTACW 1 cut(s) 454
TauI GCSGC 2 cut(s) 518, 779
TfiI GAWTC 1 cut(s) 722
Tru1I TTAA 3 cut(s) 210, 248, 312
Tru9I TTAA 3 cut(s) 210, 248, 312
TscAI CASTG 1 cut(s) 774
TseI GCWGC 7 cut(s) 57, 119, 364, 367, 370, 518, 694
TspDTI ATGAA 3 cut(s) 137, 331, 373
TspRI CASTG 1 cut(s) 774
Tth111I GACNNNGTC 2 cut(s) 41, 886
VpaK11BI GGWCC 1 cut(s) 292
XceI RCATGY 4 cut(s) 333, 455, 479, 500
XspI CTAG 3 cut(s) 468, 594, 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.