Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004948

Physical Location & Seq

Genomic Coordinates Reverse (-)

13978707 .. 13980050

Gene Structure 1344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g12670.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGCTGTACGGGCCCTTGTTAATGCCGTTGATCGACCTTGGCACTGTGGCTTACAAGTTAACTGACCTTCTTGATCAGCAAACCTCAGATGTCTCAACCATGGATCTGAAAGTTACTTGCCTAAATCAGAAACTTCTTACATGCAAAACATACATGGATAAAGAAGGGTCGAGGCAGCAGCAGTTGTTGGCATTCATCCCGAGACATCACAAGCACTACATTTTACCAAATTCTGTCAATAAGAAGGTACATTTTAGTCCACATGTTCAGACTGACACTAGGCAACATCCTTATCAAACAAGAGCACATCTTCAGCCTTCAAGCGCTGCTGCATCAAAAACTCTTTCTTGGCATTTAGCTTCAGAAACAAAGTCAACCTTGAGGGGGACTCCACAGGTCCGGACTAGCACTGGAGACACAAAAATTTCTGTAAACACTGCTGGTGTTTTCCAGCTTGTAGAAAATGAAAGGAGTACCCCTAAATCCTCGGCAACGCAGCTTCAGCAATCAAGTGGATTTCCTGCTTCTGGTGGGGTTAAGCAAACGTCAGGTGCTGGACACAAGGAAGCGGTAGATGGTTCCAGACCAATGACGGCATTCAGGTCATTTGAAAATCCAAGACGGGAGATAGTGCGCGTCCCTGTTCGCAGCAAAAGCGTGCTATCGGCGTTCTTTGCCAAACAGAAATCGAATAAGCTGAAGGCTGGATCTGTCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

240

Amino Acids

26.33

Weight (kDa)

10.07

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46225 AT2G46225 AT2G46225
fragaria_vesca	FvH4_7g15590 FvH4_7g15590 FvH4_7g15590 FvH4_7g15590 FvH4_7g15590 FvH4_7g15590
malus_domestica	MD01G1073200.v1.1 MD07G1129600.v1.1
prunus_persica	Prupe.2G179600_v2.0.a1 Prupe.2G179600_v2.0.a1
pyrus_communis	pycom01g10230 pycom07g12670
rosa_chinensis	RchiOBHm_Chr1g0358271
rosa_laevigata	RLG00000027977
rosa_multiflora	Rmu_sc0002071.1_g000020
rosa_roxburghii	Rroxscaffold_4G00298230 Rroxscaffold_4G00298280
rosa_rugosa	Rorug01G0260000 Rorug01G0260100 Rorug01G0260200 Rorug01G0260300 Rorug01G0260400
rosa_samantha	Rh1AG274100 Rh1BG241300 Rh1CG257700 Rh1DG270100
rosa_wichuraiana	Rw1G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	636
AccIII	TCCGGA	1 cut(s)	399
AciI	CCGC	1 cut(s)	569
AclWI	GGATC	2 cut(s)	111, 715
AcsI	RAATTY	2 cut(s)	229, 423
AcuI	CTGAAG	4 cut(s)	296, 345, 485, 719
AfaI	GTAC	3 cut(s)	8, 249, 475
AfeI	AGCGCT	1 cut(s)	325
AfiI	CCNNNNNNNGG	2 cut(s)	384, 527
AflIII	ACRYGT	1 cut(s)	262
AgsI	TTSAA	2 cut(s)	321, 611
AluBI	AGCT	4 cut(s)	359, 454, 499, 697
AluI	AGCT	4 cut(s)	359, 454, 499, 697
Alw21I	GWGCWC	1 cut(s)	307
Alw26I	GTCTC	3 cut(s)	97, 196, 408
AlwI	GGATC	2 cut(s)	111, 715
AlwNI	CAGNNNCTG	1 cut(s)	554
Ama87I	CYCGRG	1 cut(s)	199
Aor13HI	TCCGGA	1 cut(s)	399
Aor51HI	AGCGCT	1 cut(s)	325
AoxI	GGCC	1 cut(s)	11
ApaI	GGGCCC	1 cut(s)	15
ApeKI	GCWGC	6 cut(s)	175, 178, 326, 329, 496, 648
ApoI	RAATTY	2 cut(s)	229, 423
AspLEI	GCGC	2 cut(s)	326, 636
AspS9I	GGNCC	3 cut(s)	11, 12, 397
AvaI	CYCGRG	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	397
BaeGI	GKGCMC	1 cut(s)	15
BanII	GRGCYC	1 cut(s)	15
BauI	CACGAG	1 cut(s)	715
Bbv12I	GWGCWC	1 cut(s)	307
BbvI	GCAGC	6 cut(s)	187, 190, 313, 316, 508, 660
BccI	CCATC	1 cut(s)	569
BceAI	ACGGC	2 cut(s)	10, 609
BclI	TGATCA	1 cut(s)	73
BcoDI	GTCTC	3 cut(s)	97, 196, 408
BfaI	CTAG	2 cut(s)	279, 405
BfoI	RGCGCY	1 cut(s)	327
BisI	GCNGC	6 cut(s)	176, 179, 327, 330, 497, 649
BlsI	GCNGC	6 cut(s)	177, 180, 328, 331, 498, 650
Bme18I	GGWCC	1 cut(s)	397
BmeT110I	CYCGRG	1 cut(s)	199
BmgT120I	GGNCC	3 cut(s)	11, 12, 397
BmiI	GGNNCC	2 cut(s)	13, 580
BmsI	GCATC	1 cut(s)	341
BplI	GAGNNNNNCTC	2 cut(s)	373, 405
BpmI	CTGGAG	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	400
BsaJI	CCNNGG	3 cut(s)	37, 99, 486
BsaWI	WCCGGW	1 cut(s)	399
Bsc4I	CCNNNNNNNGG	2 cut(s)	384, 527
Bse1I	ACTGG	1 cut(s)	415
BseAI	TCCGGA	1 cut(s)	399
BseDI	CCNNGG	3 cut(s)	37, 99, 486
BseGI	GGATG	2 cut(s)	195, 286
BseLI	CCNNNNNNNGG	2 cut(s)	384, 527
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	415
BseSI	GKGCMC	1 cut(s)	15
BseXI	GCAGC	6 cut(s)	187, 190, 313, 316, 508, 660
Bsh1236I	CGCG	1 cut(s)	636
BshFI	GGCC	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	307
BsiHKCI	CYCGRG	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	400
BslFI	GGGAC	2 cut(s)	400, 623
BslI	CCNNNNNNNGG	2 cut(s)	384, 527
BsmAI	GTCTC	3 cut(s)	97, 196, 408
BsmFI	GGGAC	2 cut(s)	400, 623
BsmI	GAATGC	2 cut(s)	191, 596
BsnI	GGCC	1 cut(s)	13
BsoBI	CYCGRG	1 cut(s)	199
Bsp120I	GGGCCC	1 cut(s)	11
Bsp1286I	GDGCHC	2 cut(s)	15, 307
Bsp13I	TCCGGA	1 cut(s)	399
Bsp143I	GATC	4 cut(s)	30, 73, 103, 707
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	1 cut(s)	569
BspANI	GGCC	1 cut(s)	13
BspCNI	CTCAG	1 cut(s)	98
BspEI	TCCGGA	1 cut(s)	399
BspFNI	CGCG	1 cut(s)	636
BspLI	GGNNCC	2 cut(s)	13, 580
BspPI	GGATC	2 cut(s)	111, 715
BsrI	ACTGG	1 cut(s)	415
BssECI	CCNNGG	3 cut(s)	37, 99, 486
BssMI	GATC	4 cut(s)	30, 73, 103, 707
BssSI	CACGAG	1 cut(s)	715
BssT1I	CCWWGG	2 cut(s)	37, 99
Bst2BI	CACGAG	1 cut(s)	715
Bst4CI	ACNGT	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	659
BstDEI	CTNAG	1 cut(s)	85
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	2 cut(s)	195, 286
BstFNI	CGCG	1 cut(s)	636
BstH2I	RGCGCY	1 cut(s)	327
BstHHI	GCGC	2 cut(s)	326, 636
BstKTI	GATC	4 cut(s)	33, 76, 106, 710
BstMAI	GTCTC	3 cut(s)	97, 196, 408
BstMBI	GATC	4 cut(s)	30, 73, 103, 707
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 502, 654, 674
BstNSI	RCATGY	2 cut(s)	144, 266
BstSLI	GKGCMC	1 cut(s)	15
BstUI	CGCG	1 cut(s)	636
BstV1I	GCAGC	6 cut(s)	187, 190, 313, 316, 508, 660
BstX2I	RGATCY	2 cut(s)	103, 707
BstYI	RGATCY	2 cut(s)	103, 707
BsuRI	GGCC	1 cut(s)	13
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	195, 286
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	3 cut(s)	42, 408, 435
Cac8I	GCNNGC	1 cut(s)	659
CaiI	CAGNNNCTG	1 cut(s)	554
CfoI	GCGC	2 cut(s)	326, 636
Cfr13I	GGNCC	3 cut(s)	11, 12, 397
CseI	GACGC	1 cut(s)	625
Csp6I	GTAC	3 cut(s)	7, 248, 474
CviAII	CATG	4 cut(s)	100, 141, 154, 263
CviJI	RGCY	8 cut(s)	13, 50, 316, 359, 454, 499, 697, 704
CviKI_1	RGCY	8 cut(s)	13, 50, 316, 359, 454, 499, 697, 704
CviQI	GTAC	3 cut(s)	7, 248, 474
DdeI	CTNAG	1 cut(s)	85
DpnI	GATC	4 cut(s)	32, 75, 105, 709
DpnII	GATC	4 cut(s)	30, 73, 103, 707
Eco130I	CCWWGG	2 cut(s)	37, 99
Eco24I	GRGCYC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	397
Eco47III	AGCGCT	1 cut(s)	325
Eco57I	CTGAAG	4 cut(s)	296, 345, 485, 719
Eco88I	CYCGRG	1 cut(s)	199
EcoO109I	RGGNCCY	1 cut(s)	12
EcoT14I	CCWWGG	2 cut(s)	37, 99
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	2 cut(s)	37, 99
FaeI	CATG	4 cut(s)	103, 144, 157, 266
FaiI	YATR	5 cut(s)	101, 142, 151, 155, 264
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FaqI	GGGAC	2 cut(s)	400, 623
FatI	CATG	4 cut(s)	99, 140, 153, 262
FbaI	TGATCA	1 cut(s)	73
Fnu4HI	GCNGC	6 cut(s)	176, 179, 327, 330, 497, 649
FokI	GGATG	2 cut(s)	182, 273
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	6 cut(s)	176, 179, 327, 330, 497, 649
FspBI	CTAG	2 cut(s)	279, 405
GlaI	GCGC	2 cut(s)	325, 635
GluI	GCNGC	6 cut(s)	176, 179, 327, 330, 497, 649
GsuI	CTGGAG	1 cut(s)	432
HaeII	RGCGCY	1 cut(s)	327
HaeIII	GGCC	1 cut(s)	13
HapII	CCGG	1 cut(s)	400
HgaI	GACGC	1 cut(s)	625
HhaI	GCGC	2 cut(s)	326, 636
Hin1II	CATG	4 cut(s)	103, 144, 157, 266
Hin6I	GCGC	2 cut(s)	324, 634
HinP1I	GCGC	2 cut(s)	324, 634
HincII	GTYRAC	2 cut(s)	60, 375
HindII	GTYRAC	2 cut(s)	60, 375
HinfI	GANTC	1 cut(s)	388
HpaI	GTTAAC	1 cut(s)	60
HpaII	CCGG	1 cut(s)	400
Hpy166II	GTNNAC	4 cut(s)	60, 260, 375, 433
Hpy188I	TCNGA	5 cut(s)	88, 108, 129, 270, 364
Hpy188III	TCNNGA	5 cut(s)	71, 199, 400, 582, 717
Hpy8I	GTNNAC	4 cut(s)	60, 260, 375, 433
HpyAV	CCTTC	5 cut(s)	77, 158, 238, 327, 694
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	545
HpyCH4V	TGCA	2 cut(s)	144, 332
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 502, 654, 674
HpyF3I	CTNAG	1 cut(s)	85
HpySE526I	ACGT	1 cut(s)	545
Hsp92II	CATG	4 cut(s)	103, 144, 157, 266
HspAI	GCGC	2 cut(s)	324, 634
Kpn2I	TCCGGA	1 cut(s)	399
Ksp22I	TGATCA	1 cut(s)	73
KspAI	GTTAAC	1 cut(s)	60
Kzo9I	GATC	4 cut(s)	30, 73, 103, 707
Lsp1109I	GCAGC	6 cut(s)	187, 190, 313, 316, 508, 660
LweI	GCATC	1 cut(s)	341
MaeI	CTAG	2 cut(s)	279, 405
MaeII	ACGT	1 cut(s)	545
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	4 cut(s)	32, 75, 105, 709
MboI	GATC	4 cut(s)	30, 73, 103, 707
MboII	GAAGA	1 cut(s)	302
MflI	RGATCY	2 cut(s)	103, 707
MhlI	GDGCHC	2 cut(s)	15, 307
MluCI	AATT	2 cut(s)	229, 423
MlyI	GAGTC	1 cut(s)	382
MnlI	CCTC	4 cut(s)	94, 165, 375, 496
MroI	TCCGGA	1 cut(s)	399
MseI	TTAA	3 cut(s)	20, 59, 537
MspI	CCGG	1 cut(s)	400
Mva1269I	GAATGC	2 cut(s)	191, 596
MvnI	CGCG	1 cut(s)	636
MwoI	GCNNNNNNNGC	4 cut(s)	10, 502, 654, 674
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	4 cut(s)	30, 73, 103, 707
NlaIII	CATG	4 cut(s)	103, 144, 157, 266
NlaIV	GGNNCC	2 cut(s)	13, 580
NmeAIII	GCCGAG	1 cut(s)	467
NspI	RCATGY	2 cut(s)	144, 266
PciI	ACATGT	1 cut(s)	262
PctI	GAATGC	2 cut(s)	191, 596
PkrI	GCNGC	6 cut(s)	177, 180, 328, 331, 498, 650
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
PscI	ACATGT	1 cut(s)	262
PspN4I	GGNNCC	2 cut(s)	13, 580
PspOMI	GGGCCC	1 cut(s)	11
PspPI	GGNCC	3 cut(s)	11, 12, 397
PstNI	CAGNNNCTG	1 cut(s)	554
PsuI	RGATCY	2 cut(s)	103, 707
RsaI	GTAC	3 cut(s)	8, 249, 475
RsaNI	GTAC	3 cut(s)	7, 248, 474
SaqAI	TTAA	3 cut(s)	20, 59, 537
SatI	GCNGC	6 cut(s)	176, 179, 327, 330, 497, 649
Sau3AI	GATC	4 cut(s)	30, 73, 103, 707
Sau96I	GGNCC	3 cut(s)	11, 12, 397
SchI	GAGTC	1 cut(s)	382
SduI	GDGCHC	2 cut(s)	15, 307
SfaNI	GCATC	1 cut(s)	341
SinI	GGWCC	1 cut(s)	397
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
Sse9I	AATT	2 cut(s)	229, 423
SsiI	CCGC	1 cut(s)	569
SspMI	CTAG	2 cut(s)	279, 405
StyI	CCWWGG	2 cut(s)	37, 99
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	1 cut(s)	548
TaqI	TCGA	3 cut(s)	33, 170, 689
TasI	AATT	2 cut(s)	229, 423
Tru1I	TTAA	3 cut(s)	20, 59, 537
Tru9I	TTAA	3 cut(s)	20, 59, 537
TscAI	CASTG	3 cut(s)	49, 415, 442
TseI	GCWGC	6 cut(s)	175, 178, 326, 329, 496, 648
TspDTI	ATGAA	2 cut(s)	184, 480
TspRI	CASTG	3 cut(s)	49, 415, 442
VpaK11BI	GGWCC	1 cut(s)	397
XapI	RAATTY	2 cut(s)	229, 423
XceI	RCATGY	2 cut(s)	144, 266
XspI	CTAG	2 cut(s)	279, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.