Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004948

Physical Location & Seq

Genomic Coordinates Reverse (-)

18103372 .. 18109136

Gene Structure 5765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00298230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGTGGAAGGTGCAGAATCGCCTACCCATGGGAGACATTCTCTCGAAACCCTAGCAGAGAGAGGTTTTTTTTCTTATAATAGAGAAGATGCGGTGGATGGTTACAGGCCACTAGGGGCGGCCAGGTCATTTGACAACCAAAATCGACAGATCGTGCGAGTTCCTGTTCGCAGCAAAAGTCTGCTATCAGCTTTTTTTGTCAAACAGAAAAGCACAAAGCTGAAGACTGGTTTCGTCATGTTGTTACTGCCTCAAGAGACCCGAAAACACGGGTTTCCACTTTCTGAGCTAAGGGCCCAAGGTGGTTTGGATTGCATGTCCTTTCAAATCAATGCTAATCATACTCAAAGGCCGAAGCAAATTTGTATACCCTACCATTTTCTGCAAGTAGTCGACAGTTTGATCCGCATGAGAGTAGACTTGCGTGATATACATGAAGGTTACCTATATAGAAGTGAAAAGATTGAAATACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

18.18

Weight (kDa)

9.55

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46225 AT2G46225 AT2G46225
fragaria_vesca	FvH4_7g15590 FvH4_7g15590 FvH4_7g15590 FvH4_7g15590 FvH4_7g15590 FvH4_7g15590
malus_domestica	MD01G1073200.v1.1 MD07G1129600.v1.1
prunus_persica	Prupe.2G179600_v2.0.a1 Prupe.2G179600_v2.0.a1
pyrus_communis	pycom01g10230 pycom07g12670
rosa_chinensis	RchiOBHm_Chr1g0358271
rosa_laevigata	RLG00000027977
rosa_multiflora	Rmu_sc0002071.1_g000020
rosa_roxburghii	Rroxscaffold_4G00298230 Rroxscaffold_4G00298280
rosa_rugosa	Rorug01G0260000 Rorug01G0260100 Rorug01G0260200 Rorug01G0260300 Rorug01G0260400
rosa_samantha	Rh1AG274100 Rh1BG241300 Rh1CG257700 Rh1DG270100
rosa_wichuraiana	Rw1G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	78
AccI	GTMKAC	3 cut(s)	367, 393, 417
AciI	CCGC	3 cut(s)	92, 119, 406
AclWI	GGATC	1 cut(s)	397
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	360
AcuI	CTGAAG	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	2 cut(s)	326, 467
AjnI	CCWGG	1 cut(s)	122
AluBI	AGCT	3 cut(s)	191, 220, 289
AluI	AGCT	3 cut(s)	191, 220, 289
Alw26I	GTCTC	2 cut(s)	28, 251
AlwI	GGATC	1 cut(s)	397
AoxI	GGCC	4 cut(s)	107, 120, 294, 350
ApaI	GGGCCC	1 cut(s)	298
ApeKI	GCWGC	1 cut(s)	171
ApoI	RAATTY	1 cut(s)	360
AspS9I	GGNCC	2 cut(s)	294, 295
BaeGI	GKGCMC	1 cut(s)	298
BanII	GRGCYC	1 cut(s)	298
BbsI	GAAGAC	1 cut(s)	230
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	124
BcoDI	GTCTC	2 cut(s)	28, 251
BfaI	CTAG	2 cut(s)	53, 113
BisI	GCNGC	2 cut(s)	120, 172
BlsI	GCNGC	2 cut(s)	121, 173
Bme1390I	CCNGG	1 cut(s)	124
BmgT120I	GGNCC	2 cut(s)	294, 295
BmiI	GGNNCC	1 cut(s)	296
BmrFI	CCNGG	1 cut(s)	124
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	230
BplI	GAGNNNNNCTC	2 cut(s)	25, 57
Bpu10I	CCTNAGC	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	2 cut(s)	28, 298
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	124
BseDI	CCNNGG	2 cut(s)	28, 298
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	232
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	183
BsgI	GTGCAG	1 cut(s)	33
BshFI	GGCC	4 cut(s)	109, 122, 296, 352
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	2 cut(s)	28, 251
BsnI	GGCC	4 cut(s)	109, 122, 296, 352
Bso31I	GGTCTC	1 cut(s)	251
Bsp120I	GGGCCC	1 cut(s)	294
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	2 cut(s)	150, 402
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	3 cut(s)	92, 119, 406
BspANI	GGCC	4 cut(s)	109, 122, 296, 352
BspCNI	CTCAG	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	296
BspPI	GGATC	1 cut(s)	397
BspTNI	GGTCTC	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	232
BssECI	CCNNGG	2 cut(s)	28, 298
BssMI	GATC	2 cut(s)	150, 402
BssNAI	GTATAC	1 cut(s)	368
BssT1I	CCWWGG	2 cut(s)	28, 298
Bst1107I	GTATAC	1 cut(s)	368
Bst2UI	CCWGG	1 cut(s)	124
Bst4CI	ACNGT	1 cut(s)	398
BstDEI	CTNAG	2 cut(s)	285, 290
BstDSI	CCRYGG	1 cut(s)	28
BstEII	GGTNACC	1 cut(s)	440
BstF5I	GGATG	1 cut(s)	103
BstKTI	GATC	2 cut(s)	153, 405
BstMAI	GTCTC	2 cut(s)	28, 251
BstMBI	GATC	2 cut(s)	150, 402
BstNI	CCWGG	1 cut(s)	124
BstNSI	RCATGY	1 cut(s)	319
BstPI	GGTNACC	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	122
BstSLI	GKGCMC	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	183
BstV2I	GAAGAC	1 cut(s)	230
BstZ17I	GTATAC	1 cut(s)	368
BsuRI	GGCC	4 cut(s)	109, 122, 296, 352
BtgI	CCRYGG	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	103
Cfr13I	GGNCC	2 cut(s)	294, 295
CviAII	CATG	5 cut(s)	29, 238, 316, 409, 434
CviJI	RGCY	7 cut(s)	109, 122, 191, 220, 289, 296, 352
CviKI_1	RGCY	7 cut(s)	109, 122, 191, 220, 289, 296, 352
DdeI	CTNAG	2 cut(s)	285, 290
DpnI	GATC	2 cut(s)	152, 404
DpnII	GATC	2 cut(s)	150, 402
EaeI	YGGCCR	1 cut(s)	120
Eco130I	CCWWGG	2 cut(s)	28, 298
Eco24I	GRGCYC	1 cut(s)	298
Eco31I	GGTCTC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	242
Eco91I	GGTNACC	1 cut(s)	440
EcoO109I	RGGNCCY	1 cut(s)	294
EcoO65I	GGTNACC	1 cut(s)	440
EcoRII	CCWGG	1 cut(s)	122
EcoT14I	CCWWGG	2 cut(s)	28, 298
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	2 cut(s)	28, 298
FaeI	CATG	5 cut(s)	32, 241, 319, 412, 437
FatI	CATG	5 cut(s)	28, 237, 315, 408, 433
FblI	GTMKAC	3 cut(s)	367, 393, 417
Fnu4HI	GCNGC	2 cut(s)	120, 172
FokI	GGATG	1 cut(s)	110
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	2 cut(s)	120, 172
FspBI	CTAG	2 cut(s)	53, 113
GluI	GCNGC	2 cut(s)	120, 172
HaeIII	GGCC	4 cut(s)	109, 122, 296, 352
Hin1II	CATG	5 cut(s)	32, 241, 319, 412, 437
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	1 cut(s)	17
Hpy166II	GTNNAC	3 cut(s)	368, 394, 418
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	2 cut(s)	44, 254
Hpy8I	GTNNAC	3 cut(s)	368, 394, 418
HpyAV	CCTTC	1 cut(s)	431
HpyCH4III	ACNGT	1 cut(s)	398
HpyCH4V	TGCA	3 cut(s)	14, 315, 385
HpyF3I	CTNAG	2 cut(s)	285, 290
Hsp92II	CATG	5 cut(s)	32, 241, 319, 412, 437
Kzo9I	GATC	2 cut(s)	150, 402
LpnPI	CCDG	5 cut(s)	91, 109, 136, 177, 213
Lsp1109I	GCAGC	1 cut(s)	183
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	2 cut(s)	53, 113
MaeIII	GTNAC	3 cut(s)	101, 243, 440
MalI	GATC	2 cut(s)	152, 404
MboI	GATC	2 cut(s)	150, 402
MboII	GAAGA	2 cut(s)	98, 235
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	1 cut(s)	360
MnlI	CCTC	2 cut(s)	56, 261
MspR9I	CCNGG	1 cut(s)	124
MvaI	CCWGG	1 cut(s)	124
NcoI	CCATGG	1 cut(s)	28
NdeII	GATC	2 cut(s)	150, 402
NlaIII	CATG	5 cut(s)	32, 241, 319, 412, 437
NlaIV	GGNNCC	1 cut(s)	296
NspI	RCATGY	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	121, 173
PsiI	TTATAA	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	122
PspEI	GGTNACC	1 cut(s)	440
PspGI	CCWGG	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	296
PspOMI	GGGCCC	1 cut(s)	294
PspPI	GGNCC	2 cut(s)	294, 295
SalI	GTCGAC	1 cut(s)	392
SatI	GCNGC	2 cut(s)	120, 172
Sau3AI	GATC	2 cut(s)	150, 402
Sau96I	GGNCC	2 cut(s)	294, 295
ScrFI	CCNGG	1 cut(s)	124
SduI	GDGCHC	1 cut(s)	298
SfaNI	GCATC	1 cut(s)	79
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
Sse9I	AATT	1 cut(s)	360
SsiI	CCGC	3 cut(s)	92, 119, 406
SspMI	CTAG	2 cut(s)	53, 113
StyD4I	CCNGG	1 cut(s)	122
StyI	CCWWGG	2 cut(s)	28, 298
TaaI	ACNGT	1 cut(s)	398
TaqI	TCGA	3 cut(s)	45, 145, 393
TasI	AATT	1 cut(s)	360
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	17
TseI	GCWGC	1 cut(s)	171
TspDTI	ATGAA	1 cut(s)	450
XapI	RAATTY	1 cut(s)	360
XceI	RCATGY	1 cut(s)	319
XmiI	GTMKAC	3 cut(s)	367, 393, 417
XspI	CTAG	2 cut(s)	53, 113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.