MD01G1073200.v1.1

ABIL1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0004948
Physical Location & Seq
Forward (+)
17855937 .. 17858571
2635 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1073200.v1.1.491

Sequence Viewer

Length: 921 bp
ATGGAGCTGGAGCAGCACCGACCCGGCAACCCGGCGATGACCTTCGACGAGGTCTCCATGGAGCGCAGCAAGAGCTTCGTCAAGGCCCTGCAGGAACTCAAGAACTTAAGGCCTCAGCTTTATTCTGCAGCGGAATATTGCGAAAAGTCCTATCTTCATAGCGAACAGAAACAAATGGTACTGGATAACCTGAAAGATTATGCTGTACGGGCCCTTGTTAATGCCGTTGATCACCTTGGCACTGTGGCTTACAAGTTAACTGACCTTCTTGATCAGCAAACCTCAGACGTCTCAACCATGGATCTGAAAGTTACTTGCCTAAATCAGAAACTTCTTACATGTCAAACATACATGGATAAAGAAGGGTCGAGGCAGCATCAGTTGTTGGCCTTCATTCCGAGACATCACAAGCACTACATTTTACCAAATTCCATGAATAAGAAGGTACATTTTAGTCCACATGTACAGACTGACACTAGGCAACATCCTTATCAAGCAAGAGCACATCTTCAGTTTTCAAGCGCTGCTGCATCAAAAACTCTTTCTTGGCATTTAGCTTCAGAAACGAACTCAACCTTGAAGGGGACTCCACAGGCTCAGACTAGCATTGGAGACACAAAAATTTCCGTTAACACTGCTGGTGTTTTCCAGCTTGTAGAAAATGAAGAAGGGAGTGCCTCTAAATCCTTGGCAACTCAGCTTCAGCAACCAAGTGGATTACCTACTTCTGGCGGGGTTAAGCAAACATTGGGTCCTGGACACAGGGAAGCAGTAGATGGTTCGAAACCAATGACGGCGTTCAGGTCATTTGAGAACCCAAGACGGGACACAGTGCGTGTCCCTGTTCGCAGCAAAAGTGTGCTATCAGCGTTCTTTGCCAAACAGAAATCGAATAAGCTGCAGGCTGGATCCGTCTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

307

Amino Acids

34.05

Weight (kDa)

9.37

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 291
AciI CCGC 2 cut(s) 131, 732
AclWI GGATC 3 cut(s) 309, 903, 916
AcsI RAATTY 2 cut(s) 427, 621
AcuI CTGAAG 3 cut(s) 494, 543, 686
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 4 cut(s) 180, 207, 447, 465
AfeI AGCGCT 1 cut(s) 523
AfiI CCNNNNNNNGG 3 cut(s) 582, 728, 823
AflII CTTAAG 1 cut(s) 106
AflIII ACRYGT 2 cut(s) 338, 460
AgsI TTSAA 2 cut(s) 519, 580
AjnI CCWGG 1 cut(s) 754
AluBI AGCT 7 cut(s) 7, 75, 118, 557, 652, 700, 898
AluI AGCT 7 cut(s) 7, 75, 118, 557, 652, 700, 898
Alw21I GWGCWC 1 cut(s) 505
Alw26I GTCTC 4 cut(s) 58, 295, 394, 606
AlwI GGATC 3 cut(s) 309, 903, 916
Aor51HI AGCGCT 1 cut(s) 523
AoxI GGCC 4 cut(s) 84, 110, 210, 387
ApaI GGGCCC 1 cut(s) 214
ApeKI GCWGC 8 cut(s) 13, 66, 128, 373, 524, 527, 849, 898
ApoI RAATTY 2 cut(s) 427, 621
ArsI GACNNNNNNTTYG 2 cut(s) 736, 768
AspLEI GCGC 2 cut(s) 66, 524
AspS9I GGNCC 4 cut(s) 85, 210, 211, 752
AsuC2I CCSGG 2 cut(s) 24, 32
AsuHPI GGTGA 1 cut(s) 224
AsuII TTCGAA 1 cut(s) 782
AvaII GGWCC 1 cut(s) 752
BaeGI GKGCMC 1 cut(s) 214
BamHI GGATCC 1 cut(s) 908
BanII GRGCYC 1 cut(s) 214
BauI CACGAG 1 cut(s) 916
Bbv12I GWGCWC 1 cut(s) 505
BbvCI CCTCAGC 1 cut(s) 114
BbvI GCAGC 8 cut(s) 25, 78, 140, 385, 511, 514, 861, 885
BccI CCATC 1 cut(s) 770
BceAI ACGGC 2 cut(s) 209, 810
BcgI CGANNNNNNTGC 4 cut(s) 58, 92, 880, 914
BciT130I CCWGG 1 cut(s) 756
BclI TGATCA 2 cut(s) 229, 271
BcnI CCSGG 2 cut(s) 24, 32
BcoDI GTCTC 4 cut(s) 58, 295, 394, 606
BfaI CTAG 2 cut(s) 477, 603
BfmI CTRYAG 3 cut(s) 89, 126, 899
BfoI RGCGCY 1 cut(s) 525
BfrI CTTAAG 1 cut(s) 106
BisI GCNGC 8 cut(s) 14, 67, 129, 374, 525, 528, 850, 899
BlsI GCNGC 8 cut(s) 15, 68, 130, 375, 526, 529, 851, 900
Bme1390I CCNGG 3 cut(s) 24, 32, 756
Bme18I GGWCC 1 cut(s) 752
BmgT120I GGNCC 4 cut(s) 85, 210, 211, 752
BmiI GGNNCC 3 cut(s) 212, 753, 910
BmrFI CCNGG 3 cut(s) 24, 32, 756
BmsI GCATC 2 cut(s) 385, 539
BpmI CTGGAG 1 cut(s) 29
Bpu10I CCTNAGC 1 cut(s) 114
Bpu14I TTCGAA 1 cut(s) 782
BpuEI CTTGAG 1 cut(s) 83
BpuMI CCSGG 2 cut(s) 24, 32
BsaHI GRCGYC 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 58
BsaJI CCNNGG 4 cut(s) 57, 235, 297, 687
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 3 cut(s) 582, 728, 823
Bse1I ACTGG 1 cut(s) 186
BseBI CCWGG 1 cut(s) 756
BseDI CCNNGG 4 cut(s) 57, 235, 297, 687
BseGI GGATG 1 cut(s) 484
BseLI CCNNNNNNNGG 3 cut(s) 582, 728, 823
BseMII CTCAG 4 cut(s) 128, 297, 611, 710
BseNI ACTGG 1 cut(s) 186
BseSI GKGCMC 1 cut(s) 214
BseXI GCAGC 8 cut(s) 25, 78, 140, 385, 511, 514, 861, 885
BshFI GGCC 4 cut(s) 86, 112, 212, 389
BsiHKAI GWGCWC 1 cut(s) 505
BsiSI CCGG 2 cut(s) 24, 32
BslFI GGGAC 3 cut(s) 598, 824, 839
BslI CCNNNNNNNGG 3 cut(s) 582, 728, 823
BsmAI GTCTC 4 cut(s) 58, 295, 394, 606
BsmBI CGTCTC 1 cut(s) 295
BsmFI GGGAC 3 cut(s) 598, 824, 839
BsnI GGCC 4 cut(s) 86, 112, 212, 389
Bso31I GGTCTC 1 cut(s) 58
Bsp119I TTCGAA 1 cut(s) 782
Bsp120I GGGCCC 1 cut(s) 210
Bsp1286I GDGCHC 2 cut(s) 214, 505
Bsp1407I TGTACA 1 cut(s) 463
Bsp143I GATC 4 cut(s) 229, 271, 301, 908
Bsp19I CCATGG 2 cut(s) 57, 297
BspACI CCGC 2 cut(s) 131, 732
BspANI GGCC 4 cut(s) 86, 112, 212, 389
BspCNI CTCAG 4 cut(s) 127, 296, 610, 709
BspLI GGNNCC 3 cut(s) 212, 753, 910
BspMAI CTGCAG 3 cut(s) 93, 130, 903
BspPI GGATC 3 cut(s) 309, 903, 916
BspT104I TTCGAA 1 cut(s) 782
BspTI CTTAAG 1 cut(s) 106
BspTNI GGTCTC 1 cut(s) 58
BsrGI TGTACA 1 cut(s) 463
BsrI ACTGG 1 cut(s) 186
BssECI CCNNGG 4 cut(s) 57, 235, 297, 687
BssMI GATC 4 cut(s) 229, 271, 301, 908
BssNI GRCGYC 1 cut(s) 288
BssSI CACGAG 1 cut(s) 916
BssT1I CCWWGG 4 cut(s) 57, 235, 297, 687
Bst2BI CACGAG 1 cut(s) 916
Bst2UI CCWGG 1 cut(s) 756
Bst4CI ACNGT 2 cut(s) 244, 832
BstACI GRCGYC 1 cut(s) 288
BstAFI CTTAAG 1 cut(s) 106
BstAUI TGTACA 1 cut(s) 463
BstBI TTCGAA 1 cut(s) 782
BstC8I GCNNGC 1 cut(s) 903
BstDEI CTNAG 4 cut(s) 114, 283, 597, 696
BstDSI CCRYGG 2 cut(s) 57, 297
BstF5I GGATG 1 cut(s) 484
BstH2I RGCGCY 1 cut(s) 525
BstHHI GCGC 2 cut(s) 66, 524
BstKTI GATC 4 cut(s) 232, 274, 304, 911
BstMAI GTCTC 4 cut(s) 58, 295, 394, 606
BstMBI GATC 4 cut(s) 229, 271, 301, 908
BstMWI GCNNNNNNNGC 4 cut(s) 13, 72, 209, 875
BstNI CCWGG 1 cut(s) 756
BstNSI RCATGY 2 cut(s) 342, 464
BstSCI CCNGG 3 cut(s) 22, 30, 754
BstSFI CTRYAG 3 cut(s) 89, 126, 899
BstSLI GKGCMC 1 cut(s) 214
BstV1I GCAGC 8 cut(s) 25, 78, 140, 385, 511, 514, 861, 885
BstX2I RGATCY 2 cut(s) 301, 908
BstYI RGATCY 2 cut(s) 301, 908
BsuRI GGCC 4 cut(s) 86, 112, 212, 389
BtgI CCRYGG 2 cut(s) 57, 297
BtgZI GCGATG 1 cut(s) 50
BtsCI GGATG 1 cut(s) 484
BtsI GCAGTG 1 cut(s) 633
BtsIMutI CAGTG 3 cut(s) 240, 633, 837
Cac8I GCNNGC 1 cut(s) 903
CfoI GCGC 2 cut(s) 66, 524
Cfr13I GGNCC 4 cut(s) 85, 210, 211, 752
Csp6I GTAC 4 cut(s) 179, 206, 446, 464
CviAII CATG 6 cut(s) 58, 298, 339, 352, 433, 461
CviQI GTAC 4 cut(s) 179, 206, 446, 464
DdeI CTNAG 4 cut(s) 114, 283, 597, 696
DpnI GATC 4 cut(s) 231, 273, 303, 910
DpnII GATC 4 cut(s) 229, 271, 301, 908
Eco130I CCWWGG 4 cut(s) 57, 235, 297, 687
Eco147I AGGCCT 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 214
Eco31I GGTCTC 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 752
Eco47III AGCGCT 1 cut(s) 523
Eco57I CTGAAG 3 cut(s) 494, 543, 686
EcoO109I RGGNCCY 3 cut(s) 85, 211, 752
EcoRII CCWGG 1 cut(s) 754
EcoT14I CCWWGG 4 cut(s) 57, 235, 297, 687
EcoT38I GRGCYC 1 cut(s) 214
ErhI CCWWGG 4 cut(s) 57, 235, 297, 687
Esp3I CGTCTC 1 cut(s) 295
FaeI CATG 6 cut(s) 61, 301, 342, 355, 436, 464
FaiI YATR 9 cut(s) 59, 159, 201, 299, 340, 349, 353, 434, 462
FaqI GGGAC 3 cut(s) 598, 824, 839
FatI CATG 6 cut(s) 57, 297, 338, 351, 432, 460
FauI CCCGC 1 cut(s) 725
FbaI TGATCA 2 cut(s) 229, 271
Fnu4HI GCNGC 8 cut(s) 14, 67, 129, 374, 525, 528, 850, 899
FokI GGATG 1 cut(s) 471
FriOI GRGCYC 1 cut(s) 214
Fsp4HI GCNGC 8 cut(s) 14, 67, 129, 374, 525, 528, 850, 899
FspBI CTAG 2 cut(s) 477, 603
GlaI GCGC 2 cut(s) 65, 523
GluI GCNGC 8 cut(s) 14, 67, 129, 374, 525, 528, 850, 899
GsuI CTGGAG 1 cut(s) 29
HaeII RGCGCY 1 cut(s) 525
HaeIII GGCC 4 cut(s) 86, 112, 212, 389
HapII CCGG 2 cut(s) 24, 32
HhaI GCGC 2 cut(s) 66, 524
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 6 cut(s) 61, 301, 342, 355, 436, 464
Hin6I GCGC 2 cut(s) 64, 522
HinP1I GCGC 2 cut(s) 64, 522
HincII GTYRAC 2 cut(s) 258, 631
HindII GTYRAC 2 cut(s) 258, 631
HinfI GANTC 1 cut(s) 586
HpaI GTTAAC 2 cut(s) 258, 631
HpaII CCGG 2 cut(s) 24, 32
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 3 cut(s) 258, 458, 631
Hpy188I TCNGA 6 cut(s) 286, 306, 327, 399, 562, 600
Hpy188III TCNNGA 3 cut(s) 100, 269, 918
Hpy8I GTNNAC 3 cut(s) 258, 458, 631
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 7 cut(s) 52, 275, 356, 400, 436, 574, 662
HpyCH4III ACNGT 2 cut(s) 244, 832
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 4 cut(s) 91, 128, 530, 901
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 72, 209, 875
HpyF3I CTNAG 4 cut(s) 114, 283, 597, 696
HpySE526I ACGT 1 cut(s) 288
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 6 cut(s) 61, 301, 342, 355, 436, 464
HspAI GCGC 2 cut(s) 64, 522
Ksp22I TGATCA 2 cut(s) 229, 271
KspAI GTTAAC 2 cut(s) 258, 631
Kzo9I GATC 4 cut(s) 229, 271, 301, 908
LmnI GCTCC 3 cut(s) 4, 10, 61
Lsp1109I GCAGC 8 cut(s) 25, 78, 140, 385, 511, 514, 861, 885
LweI GCATC 2 cut(s) 385, 539
MaeI CTAG 2 cut(s) 477, 603
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 1 cut(s) 310
MalI GATC 4 cut(s) 231, 273, 303, 910
MboI GATC 4 cut(s) 229, 271, 301, 908
MboII GAAGA 3 cut(s) 146, 500, 677
MflI RGATCY 2 cut(s) 301, 908
MhlI GDGCHC 2 cut(s) 214, 505
MluCI AATT 2 cut(s) 427, 621
MlyI GAGTC 1 cut(s) 580
MnlI CCTC 5 cut(s) 43, 123, 292, 363, 688
MseI TTAA 5 cut(s) 107, 219, 257, 630, 738
MspA1I CMGCKG 1 cut(s) 131
MspCI CTTAAG 1 cut(s) 106
MspI CCGG 2 cut(s) 24, 32
MspR9I CCNGG 3 cut(s) 24, 32, 756
MvaI CCWGG 1 cut(s) 756
MwoI GCNNNNNNNGC 4 cut(s) 13, 72, 209, 875
NciI CCSGG 2 cut(s) 24, 32
NcoI CCATGG 2 cut(s) 57, 297
NdeII GATC 4 cut(s) 229, 271, 301, 908
NlaIII CATG 6 cut(s) 61, 301, 342, 355, 436, 464
NlaIV GGNNCC 3 cut(s) 212, 753, 910
NspI RCATGY 2 cut(s) 342, 464
NspV TTCGAA 1 cut(s) 782
PceI AGGCCT 1 cut(s) 112
PciI ACATGT 2 cut(s) 338, 460
PflFI GACNNNGTC 1 cut(s) 50
PfoI TCCNGGA 1 cut(s) 754
PkrI GCNGC 8 cut(s) 15, 68, 130, 375, 526, 529, 851, 900
PleI GAGTC 1 cut(s) 580
PpsI GAGTC 1 cut(s) 580
PpuMI RGGWCCY 1 cut(s) 752
PscI ACATGT 2 cut(s) 338, 460
Psp5II RGGWCCY 1 cut(s) 752
Psp6I CCWGG 1 cut(s) 754
PspGI CCWGG 1 cut(s) 754
PspN4I GGNNCC 3 cut(s) 212, 753, 910
PspOMI GGGCCC 1 cut(s) 210
PspPI GGNCC 4 cut(s) 85, 210, 211, 752
PspPPI RGGWCCY 1 cut(s) 752
PstI CTGCAG 3 cut(s) 93, 130, 903
PsuI RGATCY 2 cut(s) 301, 908
PsyI GACNNNGTC 1 cut(s) 50
RsaI GTAC 4 cut(s) 180, 207, 447, 465
RsaNI GTAC 4 cut(s) 179, 206, 446, 464
SaqAI TTAA 5 cut(s) 107, 219, 257, 630, 738
SatI GCNGC 8 cut(s) 14, 67, 129, 374, 525, 528, 850, 899
Sau3AI GATC 4 cut(s) 229, 271, 301, 908
Sau96I GGNCC 4 cut(s) 85, 210, 211, 752
SbfI CCTGCAGG 1 cut(s) 93
SchI GAGTC 1 cut(s) 580
ScrFI CCNGG 3 cut(s) 24, 32, 756
SdaI CCTGCAGG 1 cut(s) 93
SduI GDGCHC 2 cut(s) 214, 505
SfaNI GCATC 2 cut(s) 385, 539
SfcI CTRYAG 3 cut(s) 89, 126, 899
SfuI TTCGAA 1 cut(s) 782
SinI GGWCC 1 cut(s) 752
SmlI CTYRAG 2 cut(s) 98, 106
SmoI CTYRAG 2 cut(s) 98, 106
Sse8387I CCTGCAGG 1 cut(s) 93
Sse9I AATT 2 cut(s) 427, 621
SseBI AGGCCT 1 cut(s) 112
SsiI CCGC 2 cut(s) 131, 732
SspI AATATT 1 cut(s) 137
SspMI CTAG 2 cut(s) 477, 603
StuI AGGCCT 1 cut(s) 112
StyD4I CCNGG 3 cut(s) 22, 30, 754
StyI CCWWGG 4 cut(s) 57, 235, 297, 687
TaaI ACNGT 2 cut(s) 244, 832
TaiI ACGT 1 cut(s) 291
TaqI TCGA 4 cut(s) 45, 368, 782, 890
TasI AATT 2 cut(s) 427, 621
TatI WGTACW 1 cut(s) 463
Tru1I TTAA 5 cut(s) 107, 219, 257, 630, 738
Tru9I TTAA 5 cut(s) 107, 219, 257, 630, 738
TscAI CASTG 3 cut(s) 247, 640, 837
TseI GCWGC 8 cut(s) 13, 66, 128, 373, 524, 527, 849, 898
TspDTI ATGAA 4 cut(s) 146, 382, 449, 678
TspGWI ACGGA 2 cut(s) 616, 901
TspRI CASTG 3 cut(s) 247, 640, 837
Tth111I GACNNNGTC 1 cut(s) 50
Vha464I CTTAAG 1 cut(s) 106
VpaK11BI GGWCC 1 cut(s) 752
XapI RAATTY 2 cut(s) 427, 621
XceI RCATGY 2 cut(s) 342, 464
XspI CTAG 2 cut(s) 477, 603
ZraI GACGTC 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.