Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004948

Physical Location & Seq

Genomic Coordinates Reverse (-)

37002290 .. 37003834

Gene Structure 1545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0260300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCCCTTAAAGTCAAAAATCCTAGAGCTCAAATCTTCTCTCTCTTGTTCTTGGCTATTTCGGAGAGAGACCAAGGGAAGGAGCAAAAAATTTCCAATTCCCGTTGGATTCCGGAACCGGAGGGTGGCGGCGGCTCGATTCCAGCGAATGTGCTTTGCTGCAACCGTGATATTCGGCGCATGTGCTTCTGATTCGTCGCCGTTGCTGATCCCGACTTGTGGAGTAAATTGTAAGGTTATCTCAATGTCTAAGATCTCACACCAATCAGTGGCTACGCCTACTGGCTTGGCCTCGGTGTCCACTATTCCGGCATGCAAGGTCAATCAGTTGGTTCAGGTTGCACAGAAGTGCCAGAGTACGATTGCTGAAAGGGGATCTGATGGGGTTTCTCAGCAGGATCTACAAGCAAATAGTAATTTCTGGGTGGTAGCTCGCAAAGAGTTTGGAATTGCAGTCGCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

16.68

Weight (kDa)

10.0

Isoelectric Point (pI)

48.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46225 AT2G46225 AT2G46225
fragaria_vesca	FvH4_7g15590 FvH4_7g15590 FvH4_7g15590 FvH4_7g15590 FvH4_7g15590 FvH4_7g15590
malus_domestica	MD01G1073200.v1.1 MD07G1129600.v1.1
prunus_persica	Prupe.2G179600_v2.0.a1 Prupe.2G179600_v2.0.a1
pyrus_communis	pycom01g10230 pycom07g12670
rosa_chinensis	RchiOBHm_Chr1g0358271
rosa_laevigata	RLG00000027977
rosa_multiflora	Rmu_sc0002071.1_g000020
rosa_roxburghii	Rroxscaffold_4G00298230 Rroxscaffold_4G00298280
rosa_rugosa	Rorug01G0260000 Rorug01G0260100 Rorug01G0260200 Rorug01G0260300 Rorug01G0260400
rosa_samantha	Rh1AG274100 Rh1BG241300 Rh1CG257700 Rh1DG270100
rosa_wichuraiana	Rw1G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	268
AccIII	TCCGGA	1 cut(s)	111
AciI	CCGC	2 cut(s)	128, 131
AclWI	GGATC	3 cut(s)	202, 382, 405
AcsI	RAATTY	1 cut(s)	89
AfaI	GTAC	1 cut(s)	358
AfiI	CCNNNNNNNGG	4 cut(s)	78, 124, 218, 268
AleI	CACNNNNGTG	1 cut(s)	346
AluBI	AGCT	2 cut(s)	28, 431
AluI	AGCT	2 cut(s)	28, 431
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	3 cut(s)	202, 382, 405
AlwNI	CAGNNNCTG	1 cut(s)	458
Aor13HI	TCCGGA	1 cut(s)	111
AoxI	GGCC	1 cut(s)	288
ApeKI	GCWGC	1 cut(s)	158
ApoI	RAATTY	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	1 cut(s)	374
BceAI	ACGGC	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	1 cut(s)	23
BglII	AGATCT	1 cut(s)	252
BisI	GCNGC	3 cut(s)	129, 132, 159
BlsI	GCNGC	3 cut(s)	130, 133, 160
BmiI	GGNNCC	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	62
BsaJI	CCNNGG	2 cut(s)	72, 291
BsaWI	WCCGGW	2 cut(s)	111, 117
Bsc4I	CCNNNNNNNGG	4 cut(s)	78, 124, 218, 268
Bse1I	ACTGG	1 cut(s)	286
BseAI	TCCGGA	1 cut(s)	111
BseDI	CCNNGG	2 cut(s)	72, 291
BseLI	CCNNNNNNNGG	4 cut(s)	78, 124, 218, 268
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	1 cut(s)	286
BseXI	GCAGC	1 cut(s)	145
BshFI	GGCC	1 cut(s)	290
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	3 cut(s)	112, 118, 308
BslI	CCNNNNNNNGG	4 cut(s)	78, 124, 218, 268
BsmAI	GTCTC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	290
Bso31I	GGTCTC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp13I	TCCGGA	1 cut(s)	111
Bsp143I	GATC	4 cut(s)	207, 252, 374, 397
BspACI	CCGC	2 cut(s)	128, 131
BspANI	GGCC	1 cut(s)	290
BspCNI	CTCAG	1 cut(s)	403
BspEI	TCCGGA	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	116
BspPI	GGATC	3 cut(s)	202, 382, 405
BspTNI	GGTCTC	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	286
BssECI	CCNNGG	2 cut(s)	72, 291
BssMI	GATC	4 cut(s)	207, 252, 374, 397
BssT1I	CCWWGG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	166
BstC8I	GCNNGC	2 cut(s)	313, 433
BstDEI	CTNAG	2 cut(s)	249, 390
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	4 cut(s)	210, 255, 377, 400
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	4 cut(s)	207, 252, 374, 397
BstNSI	RCATGY	2 cut(s)	183, 315
BstV1I	GCAGC	1 cut(s)	145
BstX2I	RGATCY	3 cut(s)	252, 374, 397
BstYI	RGATCY	3 cut(s)	252, 374, 397
BsuRI	GGCC	1 cut(s)	290
BtsIMutI	CAGTG	1 cut(s)	273
Cac8I	GCNNGC	2 cut(s)	313, 433
CaiI	CAGNNNCTG	1 cut(s)	458
CfoI	GCGC	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	357
CviAII	CATG	2 cut(s)	180, 312
CviJI	RGCY	7 cut(s)	28, 55, 134, 272, 285, 290, 431
CviKI_1	RGCY	7 cut(s)	28, 55, 134, 272, 285, 290, 431
CviQI	GTAC	1 cut(s)	357
DdeI	CTNAG	2 cut(s)	249, 390
DpnI	GATC	4 cut(s)	209, 254, 376, 399
DpnII	GATC	4 cut(s)	207, 252, 374, 397
Ecl136II	GAGCTC	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	30
Eco31I	GGTCTC	1 cut(s)	62
Eco53kI	GAGCTC	1 cut(s)	28
EcoICRI	GAGCTC	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	2 cut(s)	183, 315
FaiI	YATR	2 cut(s)	181, 313
FatI	CATG	2 cut(s)	179, 311
Fnu4HI	GCNGC	3 cut(s)	129, 132, 159
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	3 cut(s)	129, 132, 159
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	3 cut(s)	129, 132, 159
HaeIII	GGCC	1 cut(s)	290
HapII	CCGG	3 cut(s)	112, 118, 308
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	2 cut(s)	183, 315
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HinfI	GANTC	3 cut(s)	108, 138, 191
HpaII	CCGG	3 cut(s)	112, 118, 308
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	3 cut(s)	63, 190, 379
Hpy188III	TCNNGA	2 cut(s)	112, 211
Hpy8I	GTNNAC	1 cut(s)	300
Hpy99I	CGWCG	1 cut(s)	199
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	4 cut(s)	161, 315, 341, 452
HpyF3I	CTNAG	2 cut(s)	249, 390
Hsp92II	CATG	2 cut(s)	183, 315
HspAI	GCGC	1 cut(s)	177
Kpn2I	TCCGGA	1 cut(s)	111
Kzo9I	GATC	4 cut(s)	207, 252, 374, 397
LmnI	GCTCC	1 cut(s)	81
LpnPI	CCDG	9 cut(s)	125, 131, 155, 267, 320, 321, 365, 380, 406
Lsp1109I	GCAGC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	23
MalI	GATC	4 cut(s)	209, 254, 376, 399
MboI	GATC	4 cut(s)	207, 252, 374, 397
MboII	GAAGA	1 cut(s)	27
MflI	RGATCY	3 cut(s)	252, 374, 397
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	5 cut(s)	89, 96, 226, 415, 447
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	2 cut(s)	114, 301
MroI	TCCGGA	1 cut(s)	111
MseI	TTAA	1 cut(s)	8
MslI	CAYNNNNRTG	1 cut(s)	346
MspI	CCGG	3 cut(s)	112, 118, 308
NdeII	GATC	4 cut(s)	207, 252, 374, 397
NlaIII	CATG	2 cut(s)	183, 315
NlaIV	GGNNCC	1 cut(s)	116
NspI	RCATGY	2 cut(s)	183, 315
OliI	CACNNNNGTG	1 cut(s)	346
PaeI	GCATGC	1 cut(s)	315
PcsI	WCGNNNNNNNCGW	1 cut(s)	142
PfeI	GAWTC	3 cut(s)	108, 138, 191
PflMI	CCANNNNNTGG	1 cut(s)	268
PkrI	GCNGC	3 cut(s)	130, 133, 160
Psp124BI	GAGCTC	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	116
PstNI	CAGNNNCTG	1 cut(s)	458
PsuI	RGATCY	3 cut(s)	252, 374, 397
RsaI	GTAC	1 cut(s)	358
RsaNI	GTAC	1 cut(s)	357
RseI	CAYNNNNRTG	1 cut(s)	346
SacI	GAGCTC	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	3 cut(s)	129, 132, 159
Sau3AI	GATC	4 cut(s)	207, 252, 374, 397
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	5 cut(s)	30, 237, 321, 339, 433
SmiMI	CAYNNNNRTG	1 cut(s)	346
SphI	GCATGC	1 cut(s)	315
Sse9I	AATT	5 cut(s)	89, 96, 226, 415, 447
SsiI	CCGC	2 cut(s)	128, 131
SspMI	CTAG	1 cut(s)	23
SstI	GAGCTC	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	1 cut(s)	136
TasI	AATT	5 cut(s)	89, 96, 226, 415, 447
TauI	GCSGC	2 cut(s)	131, 134
TfiI	GAWTC	3 cut(s)	108, 138, 191
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TscAI	CASTG	1 cut(s)	273
TseI	GCWGC	1 cut(s)	158
TspRI	CASTG	1 cut(s)	273
Van91I	CCANNNNNTGG	1 cut(s)	268
XapI	RAATTY	1 cut(s)	89
XceI	RCATGY	2 cut(s)	183, 315
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.