Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004948

Physical Location & Seq

Genomic Coordinates Reverse (-)

18512686 .. 18515749

Gene Structure 3064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1129600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGAGCTGGAGCAGCACCGCCCTGCCATGACCTTTGACGAGGTCTCCATGGAGCGCAGCAAGAGCTTCGTCAAGGCCCTGCAGGAACTCAAGAACTTGAGGCCTCAGCTTTATTCTGCTGCGGAATACTGCGAAAAGTCCTATCTTCATAGTGAACAGAAACAAATGGTATTGGATAACCTGAAAGATTATGCTGTACGGGCCCTTGTTAATGCCGTTGATCACCTTGGCACTGTGGCTTACAAGTTAACTGACCTTCTTGATCAGCAAACCTCAGATGTCTCAACCATGGATCTGAAAGTTACTTGCCTAAATCAGAAACTTCTTACATGCAAAACATACATGGATAAAGAAGGGTCCAGGCAGCAGCAGTTGTTGGCATTCATCCCGAGACATCACAAGCACTACATTTTACCAAATTCCGTCAATAAGAAGGTACATTTTAGTCCACATGTTCAGACTGACACTAGGCAACATCCTTATCAAGCAAGAGCACATCTTCAGCCTTCAAGCGCTGCTGCATCAAAAACTCTTTCTTGGCATTTAGCTTCAGAAACAAAGTCAACCTTGAAGGGGACTCCACAGGTCCGGACTAGCACTGGAGACACAAAAATTTCTGTAAACACTGCTGGTGTTTTCCAGCTTGTAGAAAATGAAGGGAGTACCCCTAAATCCTCGGCAACGCAGCTTCAGCAACCAAGTGGATTTCCTGCTGCTGGACACAAGGAAGCGGTAGATGGTTCCAGACCAATGACGGCGTTCAGGTCATTTGAAAACCCAAGACGGGAGATAGTGCGCGTCCCTGTTCGCAGCAAAAGCGTGCTATCAGCGTTCTTTGCCAAACAGAAATCGAATAAGCTGAAGGCTGGATCTGTCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

294

Amino Acids

32.81

Weight (kDa)

9.61

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46225 AT2G46225 AT2G46225
fragaria_vesca	FvH4_7g15590 FvH4_7g15590 FvH4_7g15590 FvH4_7g15590 FvH4_7g15590 FvH4_7g15590
malus_domestica	MD01G1073200.v1.1 MD07G1129600.v1.1
prunus_persica	Prupe.2G179600_v2.0.a1 Prupe.2G179600_v2.0.a1
pyrus_communis	pycom01g10230 pycom07g12670
rosa_chinensis	RchiOBHm_Chr1g0358271
rosa_laevigata	RLG00000027977
rosa_multiflora	Rmu_sc0002071.1_g000020
rosa_roxburghii	Rroxscaffold_4G00298230 Rroxscaffold_4G00298280
rosa_rugosa	Rorug01G0260000 Rorug01G0260100 Rorug01G0260200 Rorug01G0260300 Rorug01G0260400
rosa_samantha	Rh1AG274100 Rh1BG241300 Rh1CG257700 Rh1DG270100
rosa_wichuraiana	Rw1G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	798
AccIII	TCCGGA	1 cut(s)	588
AciI	CCGC	3 cut(s)	19, 122, 731
AclWI	GGATC	2 cut(s)	300, 877
AcsI	RAATTY	2 cut(s)	418, 612
AcuI	CTGAAG	4 cut(s)	485, 534, 674, 881
AfaI	GTAC	3 cut(s)	198, 438, 664
AfeI	AGCGCT	1 cut(s)	514
AfiI	CCNNNNNNNGG	3 cut(s)	573, 716, 784
AflIII	ACRYGT	1 cut(s)	451
AgsI	TTSAA	3 cut(s)	510, 571, 773
AjnI	CCWGG	1 cut(s)	359
AluBI	AGCT	7 cut(s)	7, 66, 109, 548, 643, 688, 859
AluI	AGCT	7 cut(s)	7, 66, 109, 548, 643, 688, 859
Alw21I	GWGCWC	1 cut(s)	496
Alw26I	GTCTC	4 cut(s)	49, 286, 385, 597
AlwI	GGATC	2 cut(s)	300, 877
Ama87I	CYCGRG	1 cut(s)	388
Aor13HI	TCCGGA	1 cut(s)	588
Aor51HI	AGCGCT	1 cut(s)	514
AoxI	GGCC	3 cut(s)	75, 101, 201
ApaI	GGGCCC	1 cut(s)	205
ApoI	RAATTY	2 cut(s)	418, 612
AspLEI	GCGC	3 cut(s)	57, 515, 798
AspS9I	GGNCC	5 cut(s)	76, 201, 202, 357, 586
AsuHPI	GGTGA	1 cut(s)	215
AvaI	CYCGRG	1 cut(s)	388
AvaII	GGWCC	2 cut(s)	357, 586
BaeGI	GKGCMC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	205
BauI	CACGAG	1 cut(s)	877
Bbv12I	GWGCWC	1 cut(s)	496
BbvCI	CCTCAGC	1 cut(s)	105
BccI	CCATC	1 cut(s)	731
BceAI	ACGGC	2 cut(s)	200, 771
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BciT130I	CCWGG	1 cut(s)	361
BclI	TGATCA	2 cut(s)	220, 262
BcoDI	GTCTC	4 cut(s)	49, 286, 385, 597
BfaI	CTAG	2 cut(s)	468, 594
BfmI	CTRYAG	1 cut(s)	80
BfoI	RGCGCY	1 cut(s)	516
Bme1390I	CCNGG	1 cut(s)	361
Bme18I	GGWCC	2 cut(s)	357, 586
BmeT110I	CYCGRG	1 cut(s)	388
BmgT120I	GGNCC	5 cut(s)	76, 201, 202, 357, 586
BmiI	GGNNCC	3 cut(s)	203, 358, 742
BmrFI	CCNGG	1 cut(s)	361
BmsI	GCATC	1 cut(s)	530
BpmI	CTGGAG	2 cut(s)	29, 621
Bpu10I	CCTNAGC	1 cut(s)	105
BpuEI	CTTGAG	2 cut(s)	74, 118
BsaI	GGTCTC	1 cut(s)	49
BsaJI	CCNNGG	4 cut(s)	48, 226, 288, 675
BsaWI	WCCGGW	1 cut(s)	588
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	3 cut(s)	573, 716, 784
Bse1I	ACTGG	1 cut(s)	604
BseAI	TCCGGA	1 cut(s)	588
BseBI	CCWGG	1 cut(s)	361
BseDI	CCNNGG	4 cut(s)	48, 226, 288, 675
BseGI	GGATG	2 cut(s)	384, 475
BseLI	CCNNNNNNNGG	3 cut(s)	573, 716, 784
BseMII	CTCAG	2 cut(s)	119, 288
BseNI	ACTGG	1 cut(s)	604
BseSI	GKGCMC	1 cut(s)	205
Bsh1236I	CGCG	1 cut(s)	798
BshFI	GGCC	3 cut(s)	77, 103, 203
BsiHKAI	GWGCWC	1 cut(s)	496
BsiHKCI	CYCGRG	1 cut(s)	388
BsiSI	CCGG	1 cut(s)	589
BslFI	GGGAC	2 cut(s)	589, 785
BslI	CCNNNNNNNGG	3 cut(s)	573, 716, 784
BsmAI	GTCTC	4 cut(s)	49, 286, 385, 597
BsmFI	GGGAC	2 cut(s)	589, 785
BsmI	GAATGC	1 cut(s)	380
BsnI	GGCC	3 cut(s)	77, 103, 203
Bso31I	GGTCTC	1 cut(s)	49
BsoBI	CYCGRG	1 cut(s)	388
Bsp120I	GGGCCC	1 cut(s)	201
Bsp1286I	GDGCHC	2 cut(s)	205, 496
Bsp13I	TCCGGA	1 cut(s)	588
Bsp143I	GATC	4 cut(s)	220, 262, 292, 869
Bsp19I	CCATGG	2 cut(s)	48, 288
BspACI	CCGC	3 cut(s)	19, 122, 731
BspANI	GGCC	3 cut(s)	77, 103, 203
BspCNI	CTCAG	2 cut(s)	118, 287
BspEI	TCCGGA	1 cut(s)	588
BspFNI	CGCG	1 cut(s)	798
BspLI	GGNNCC	3 cut(s)	203, 358, 742
BspMAI	CTGCAG	1 cut(s)	84
BspPI	GGATC	2 cut(s)	300, 877
BspTNI	GGTCTC	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	604
BssECI	CCNNGG	4 cut(s)	48, 226, 288, 675
BssMI	GATC	4 cut(s)	220, 262, 292, 869
BssSI	CACGAG	1 cut(s)	877
BssT1I	CCWWGG	3 cut(s)	48, 226, 288
Bst2BI	CACGAG	1 cut(s)	877
Bst2UI	CCWGG	1 cut(s)	361
Bst4CI	ACNGT	1 cut(s)	235
BstC8I	GCNNGC	1 cut(s)	821
BstDEI	CTNAG	2 cut(s)	105, 274
BstDSI	CCRYGG	2 cut(s)	48, 288
BstF5I	GGATG	2 cut(s)	384, 475
BstFNI	CGCG	1 cut(s)	798
BstH2I	RGCGCY	1 cut(s)	516
BstHHI	GCGC	3 cut(s)	57, 515, 798
BstKTI	GATC	4 cut(s)	223, 265, 295, 872
BstMAI	GTCTC	4 cut(s)	49, 286, 385, 597
BstMBI	GATC	4 cut(s)	220, 262, 292, 869
BstMWI	GCNNNNNNNGC	6 cut(s)	13, 63, 200, 691, 816, 836
BstNI	CCWGG	1 cut(s)	361
BstNSI	RCATGY	2 cut(s)	333, 455
BstSCI	CCNGG	1 cut(s)	359
BstSFI	CTRYAG	1 cut(s)	80
BstSLI	GKGCMC	1 cut(s)	205
BstUI	CGCG	1 cut(s)	798
BstX2I	RGATCY	2 cut(s)	292, 869
BstYI	RGATCY	2 cut(s)	292, 869
BsuRI	GGCC	3 cut(s)	77, 103, 203
BtgI	CCRYGG	2 cut(s)	48, 288
BtsCI	GGATG	2 cut(s)	384, 475
BtsI	GCAGTG	1 cut(s)	624
BtsIMutI	CAGTG	3 cut(s)	231, 597, 624
Cac8I	GCNNGC	1 cut(s)	821
CfoI	GCGC	3 cut(s)	57, 515, 798
Cfr13I	GGNCC	5 cut(s)	76, 201, 202, 357, 586
CseI	GACGC	1 cut(s)	787
Csp6I	GTAC	3 cut(s)	197, 437, 663
CviAII	CATG	6 cut(s)	28, 49, 289, 330, 343, 452
CviQI	GTAC	3 cut(s)	197, 437, 663
DdeI	CTNAG	2 cut(s)	105, 274
DpnI	GATC	4 cut(s)	222, 264, 294, 871
DpnII	GATC	4 cut(s)	220, 262, 292, 869
Eco130I	CCWWGG	3 cut(s)	48, 226, 288
Eco147I	AGGCCT	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	205
Eco31I	GGTCTC	1 cut(s)	49
Eco47I	GGWCC	2 cut(s)	357, 586
Eco47III	AGCGCT	1 cut(s)	514
Eco57I	CTGAAG	4 cut(s)	485, 534, 674, 881
Eco88I	CYCGRG	1 cut(s)	388
EcoO109I	RGGNCCY	2 cut(s)	76, 202
EcoRII	CCWGG	1 cut(s)	359
EcoT14I	CCWWGG	3 cut(s)	48, 226, 288
EcoT38I	GRGCYC	1 cut(s)	205
ErhI	CCWWGG	3 cut(s)	48, 226, 288
FaeI	CATG	6 cut(s)	31, 52, 292, 333, 346, 455
FaiI	YATR	9 cut(s)	29, 50, 150, 192, 290, 331, 340, 344, 453
FalI	AAGNNNNNCTT	2 cut(s)	551, 583
FaqI	GGGAC	2 cut(s)	589, 785
FatI	CATG	6 cut(s)	27, 48, 288, 329, 342, 451
FbaI	TGATCA	2 cut(s)	220, 262
FokI	GGATG	2 cut(s)	371, 462
FriOI	GRGCYC	1 cut(s)	205
FspBI	CTAG	2 cut(s)	468, 594
GlaI	GCGC	3 cut(s)	56, 514, 797
GsuI	CTGGAG	2 cut(s)	29, 621
HaeII	RGCGCY	1 cut(s)	516
HaeIII	GGCC	3 cut(s)	77, 103, 203
HapII	CCGG	1 cut(s)	589
HgaI	GACGC	1 cut(s)	787
HhaI	GCGC	3 cut(s)	57, 515, 798
Hin1II	CATG	6 cut(s)	31, 52, 292, 333, 346, 455
Hin6I	GCGC	3 cut(s)	55, 513, 796
HinP1I	GCGC	3 cut(s)	55, 513, 796
HincII	GTYRAC	2 cut(s)	249, 564
HindII	GTYRAC	2 cut(s)	249, 564
HinfI	GANTC	1 cut(s)	577
HpaI	GTTAAC	1 cut(s)	249
HpaII	CCGG	1 cut(s)	589
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	5 cut(s)	155, 249, 449, 564, 622
Hpy188I	TCNGA	5 cut(s)	277, 297, 318, 459, 553
Hpy188III	TCNNGA	6 cut(s)	91, 260, 388, 589, 744, 879
Hpy8I	GTNNAC	5 cut(s)	155, 249, 449, 564, 622
HpyAV	CCTTC	7 cut(s)	266, 347, 427, 516, 565, 650, 856
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	3 cut(s)	82, 333, 521
HpyF10VI	GCNNNNNNNGC	6 cut(s)	13, 63, 200, 691, 816, 836
HpyF3I	CTNAG	2 cut(s)	105, 274
Hsp92II	CATG	6 cut(s)	31, 52, 292, 333, 346, 455
HspAI	GCGC	3 cut(s)	55, 513, 796
Kpn2I	TCCGGA	1 cut(s)	588
Ksp22I	TGATCA	2 cut(s)	220, 262
KspAI	GTTAAC	1 cut(s)	249
Kzo9I	GATC	4 cut(s)	220, 262, 292, 869
LmnI	GCTCC	3 cut(s)	4, 10, 52
LweI	GCATC	1 cut(s)	530
MaeI	CTAG	2 cut(s)	468, 594
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	4 cut(s)	222, 264, 294, 871
MboI	GATC	4 cut(s)	220, 262, 292, 869
MboII	GAAGA	2 cut(s)	137, 491
MflI	RGATCY	2 cut(s)	292, 869
MhlI	GDGCHC	2 cut(s)	205, 496
MluCI	AATT	2 cut(s)	418, 612
MlyI	GAGTC	1 cut(s)	571
MnlI	CCTC	5 cut(s)	34, 93, 114, 283, 685
MroI	TCCGGA	1 cut(s)	588
MseI	TTAA	2 cut(s)	210, 248
MspI	CCGG	1 cut(s)	589
MspR9I	CCNGG	1 cut(s)	361
Mva1269I	GAATGC	1 cut(s)	380
MvaI	CCWGG	1 cut(s)	361
MvnI	CGCG	1 cut(s)	798
MwoI	GCNNNNNNNGC	6 cut(s)	13, 63, 200, 691, 816, 836
NcoI	CCATGG	2 cut(s)	48, 288
NdeII	GATC	4 cut(s)	220, 262, 292, 869
NlaIII	CATG	6 cut(s)	31, 52, 292, 333, 346, 455
NlaIV	GGNNCC	3 cut(s)	203, 358, 742
NmeAIII	GCCGAG	1 cut(s)	656
NspI	RCATGY	2 cut(s)	333, 455
PceI	AGGCCT	1 cut(s)	103
PciI	ACATGT	1 cut(s)	451
PctI	GAATGC	1 cut(s)	380
PflFI	GACNNNGTC	1 cut(s)	41
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
PscI	ACATGT	1 cut(s)	451
Psp6I	CCWGG	1 cut(s)	359
PspGI	CCWGG	1 cut(s)	359
PspN4I	GGNNCC	3 cut(s)	203, 358, 742
PspOMI	GGGCCC	1 cut(s)	201
PspPI	GGNCC	5 cut(s)	76, 201, 202, 357, 586
PstI	CTGCAG	1 cut(s)	84
PsuI	RGATCY	2 cut(s)	292, 869
PsyI	GACNNNGTC	1 cut(s)	41
RsaI	GTAC	3 cut(s)	198, 438, 664
RsaNI	GTAC	3 cut(s)	197, 437, 663
SaqAI	TTAA	2 cut(s)	210, 248
Sau3AI	GATC	4 cut(s)	220, 262, 292, 869
Sau96I	GGNCC	5 cut(s)	76, 201, 202, 357, 586
SbfI	CCTGCAGG	1 cut(s)	84
SchI	GAGTC	1 cut(s)	571
ScrFI	CCNGG	1 cut(s)	361
SdaI	CCTGCAGG	1 cut(s)	84
SduI	GDGCHC	2 cut(s)	205, 496
SfaNI	GCATC	1 cut(s)	530
SfcI	CTRYAG	1 cut(s)	80
SinI	GGWCC	2 cut(s)	357, 586
SmlI	CTYRAG	2 cut(s)	89, 97
SmoI	CTYRAG	2 cut(s)	89, 97
Sse8387I	CCTGCAGG	1 cut(s)	84
Sse9I	AATT	2 cut(s)	418, 612
SseBI	AGGCCT	1 cut(s)	103
SsiI	CCGC	3 cut(s)	19, 122, 731
SspMI	CTAG	2 cut(s)	468, 594
StuI	AGGCCT	1 cut(s)	103
StyD4I	CCNGG	1 cut(s)	359
StyI	CCWWGG	3 cut(s)	48, 226, 288
TaaI	ACNGT	1 cut(s)	235
TaqI	TCGA	1 cut(s)	851
TasI	AATT	2 cut(s)	418, 612
Tru1I	TTAA	2 cut(s)	210, 248
Tru9I	TTAA	2 cut(s)	210, 248
TscAI	CASTG	3 cut(s)	238, 604, 631
TspDTI	ATGAA	3 cut(s)	137, 373, 669
TspGWI	ACGGA	1 cut(s)	412
TspRI	CASTG	3 cut(s)	238, 604, 631
Tth111I	GACNNNGTC	1 cut(s)	41
VpaK11BI	GGWCC	2 cut(s)	357, 586
XapI	RAATTY	2 cut(s)	418, 612
XceI	RCATGY	2 cut(s)	333, 455
XspI	CTAG	2 cut(s)	468, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.