Rh1BG241300

ABIL1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0004948
Physical Location & Seq
Forward (+)
36423809 .. 36426306
2498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG241300.1

Sequence Viewer

Length: 909 bp
ATGGAGTTAGAGCAATCCCGGCCGCTCAATCCGGCCATGACCTTCGACGAGGTCTCCATGGAGCGCAGCAAGAGCTTCGTCAAGGCCTTACAGGAGCTCAAGAACTTGAGGCCTCAGCTTTACTCTGCTGCGGAATATTGTGAAAAGTCGTATCTTCATAGCGAGCAGAAACAAATGGTACTGGATAACCTGAAAGATTATGCTGTGCGAGCCCTTGTTAATGCTGTTGATCACCTTGGCACTGTGGCCTACAAGTTAACTGACCTTCTTGACCAGCAAACCTTAGATGTTTCAACCATGGACCTGAAAGTTACTTGCCTAAACCAGAAACTTCTTACATGCAAAACATTCATGGATAAAGAAGGTTCGAGGCAGCAGCAGCTGTTGTCATTCATCCCAAGACATCACAAGCACTACATTTTACCCAATTCTGTCAATAAGAAGGTACATTTCAGTCCACACGTACAGACTGATACTCGGCAACATGCTTATCAAGCAAGACCACATGTTCAACCGTCAAGTGCCACTGCAGCAAAAACTCTTTCCTGGCATTTAGCTTCAGAAACAAAATCAACCTTGAAGGGGACTTCGCATGGTCTGGCGAGCTCTGCAGACACAAAAGTTTCTGTAAATACATCTGGCACTTTCCAGCTTTTAGATAATGAGGGGAGTGCCACTACGAAATCCTCGGGTGCTCACCTGCAGCTACCAAGTCGAGTTCCTGGTTCTGAACCATTTGTTGCTGGACATAGGGATGCGGTGGATGGTTACAGGCCACTAGGGGCGGCCAGGTCATTTGACAACCAAAATCGACAGATCGTGCGAGTTCCTGTTCGCAGCAAAAGTCTGCTATCAGCTTTTTTTGTCAAACAGAAAAGCACAAAGCTGAAGACTGGGTCCGTCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

302

Amino Acids

33.61

Weight (kDa)

9.56

Isoelectric Point (pI)

40.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 708
Acc36I ACCTGC 1 cut(s) 708
AccBSI CCGCTC 1 cut(s) 25
AciI CCGC 4 cut(s) 23, 131, 758, 785
AcoI YGGCCR 3 cut(s) 20, 33, 786
AcuI CTGAAG 2 cut(s) 543, 908
AfaI GTAC 3 cut(s) 180, 447, 465
AfiI CCNNNNNNNGG 1 cut(s) 582
AflIII ACRYGT 2 cut(s) 460, 505
AgsI TTSAA 3 cut(s) 294, 512, 580
AjnI CCWGG 3 cut(s) 545, 721, 788
Alw21I GWGCWC 3 cut(s) 99, 608, 697
Alw26I GTCTC 1 cut(s) 58
AlwNI CAGNNNCTG 1 cut(s) 382
Ama87I CYCGRG 1 cut(s) 688
AoxI GGCC 7 cut(s) 20, 33, 84, 110, 246, 773, 786
ApeKI GCWGC 8 cut(s) 66, 128, 373, 376, 379, 530, 703, 837
AspLEI GCGC 1 cut(s) 66
AspS9I GGNCC 2 cut(s) 301, 897
AsuC2I CCSGG 1 cut(s) 19
AsuHPI GGTGA 2 cut(s) 224, 689
AvaI CYCGRG 1 cut(s) 688
AvaII GGWCC 2 cut(s) 301, 897
BanII GRGCYC 3 cut(s) 99, 214, 608
BbsI GAAGAC 1 cut(s) 896
Bbv12I GWGCWC 3 cut(s) 99, 608, 697
BbvCI CCTCAGC 1 cut(s) 114
BbvI GCAGC 8 cut(s) 78, 115, 385, 388, 391, 542, 715, 849
BccI CCATC 1 cut(s) 758
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BciT130I CCWGG 3 cut(s) 547, 723, 790
BclI TGATCA 1 cut(s) 229
BcnI CCSGG 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 58
BfaI CTAG 1 cut(s) 779
BfmI CTRYAG 3 cut(s) 528, 609, 701
BfuAI ACCTGC 1 cut(s) 708
Bme1390I CCNGG 4 cut(s) 19, 547, 723, 790
Bme18I GGWCC 2 cut(s) 301, 897
BmeT110I CYCGRG 1 cut(s) 688
BmgT120I GGNCC 2 cut(s) 301, 897
BmiI GGNNCC 1 cut(s) 898
BmrFI CCNGG 4 cut(s) 19, 547, 723, 790
BmrI ACTGGG 1 cut(s) 903
BmsI GCATC 1 cut(s) 745
BmuI ACTGGG 1 cut(s) 903
BpiI GAAGAC 1 cut(s) 896
Bpu10I CCTNAGC 1 cut(s) 114
BpuEI CTTGAG 2 cut(s) 83, 127
BpuMI CCSGG 1 cut(s) 19
BsaAI YACGTR 1 cut(s) 463
BsaI GGTCTC 1 cut(s) 58
BsaJI CCNNGG 4 cut(s) 57, 235, 297, 687
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 1 cut(s) 582
Bse1I ACTGG 2 cut(s) 186, 898
BseBI CCWGG 3 cut(s) 547, 723, 790
BseDI CCNNGG 4 cut(s) 57, 235, 297, 687
BseGI GGATG 3 cut(s) 393, 760, 769
BseLI CCNNNNNNNGG 1 cut(s) 582
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 2 cut(s) 186, 898
BseX3I CGGCCG 1 cut(s) 20
BseXI GCAGC 8 cut(s) 78, 115, 385, 388, 391, 542, 715, 849
Bsh1285I CGRYCG 1 cut(s) 23
BshFI GGCC 7 cut(s) 22, 35, 86, 112, 248, 775, 788
BsiEI CGRYCG 1 cut(s) 23
BsiHKAI GWGCWC 3 cut(s) 99, 608, 697
BsiHKCI CYCGRG 1 cut(s) 688
BsiSI CCGG 2 cut(s) 19, 32
BslFI GGGAC 1 cut(s) 598
BslI CCNNNNNNNGG 1 cut(s) 582
BsmAI GTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 598
BsnI GGCC 7 cut(s) 22, 35, 86, 112, 248, 775, 788
Bso31I GGTCTC 1 cut(s) 58
BsoBI CYCGRG 1 cut(s) 688
Bsp1286I GDGCHC 4 cut(s) 99, 214, 608, 697
Bsp143I GATC 2 cut(s) 229, 816
Bsp19I CCATGG 2 cut(s) 57, 297
BspACI CCGC 4 cut(s) 23, 131, 758, 785
BspANI GGCC 7 cut(s) 22, 35, 86, 112, 248, 775, 788
BspCNI CTCAG 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 898
BspMAI CTGCAG 3 cut(s) 532, 613, 705
BspMI ACCTGC 1 cut(s) 708
BspTNI GGTCTC 1 cut(s) 58
BsrBI CCGCTC 1 cut(s) 25
BsrI ACTGG 2 cut(s) 186, 898
BssECI CCNNGG 4 cut(s) 57, 235, 297, 687
BssMI GATC 2 cut(s) 229, 816
BssT1I CCWWGG 3 cut(s) 57, 235, 297
Bst2UI CCWGG 3 cut(s) 547, 723, 790
Bst4CI ACNGT 2 cut(s) 244, 516
BstBAI YACGTR 1 cut(s) 463
BstC8I GCNNGC 3 cut(s) 164, 210, 604
BstDEI CTNAG 2 cut(s) 114, 283
BstDSI CCRYGG 2 cut(s) 57, 297
BstF5I GGATG 3 cut(s) 393, 760, 769
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 2 cut(s) 232, 819
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 2 cut(s) 229, 816
BstMCI CGRYCG 1 cut(s) 23
BstMWI GCNNNNNNNGC 7 cut(s) 19, 72, 209, 379, 494, 530, 608
BstNI CCWGG 3 cut(s) 547, 723, 790
BstNSI RCATGY 3 cut(s) 342, 488, 509
BstSCI CCNGG 4 cut(s) 17, 545, 721, 788
BstSFI CTRYAG 3 cut(s) 528, 609, 701
BstV1I GCAGC 8 cut(s) 78, 115, 385, 388, 391, 542, 715, 849
BstV2I GAAGAC 1 cut(s) 896
BstZI CGGCCG 1 cut(s) 20
BsuRI GGCC 7 cut(s) 22, 35, 86, 112, 248, 775, 788
BtgI CCRYGG 2 cut(s) 57, 297
BtsCI GGATG 3 cut(s) 393, 760, 769
BtsI GCAGTG 1 cut(s) 525
BtsIMutI CAGTG 2 cut(s) 240, 525
BveI ACCTGC 1 cut(s) 708
Cac8I GCNNGC 3 cut(s) 164, 210, 604
CaiI CAGNNNCTG 1 cut(s) 382
CfoI GCGC 1 cut(s) 66
Cfr13I GGNCC 2 cut(s) 301, 897
Csp6I GTAC 3 cut(s) 179, 446, 464
CviAII CATG 8 cut(s) 37, 58, 298, 339, 352, 485, 506, 593
CviQI GTAC 3 cut(s) 179, 446, 464
DdeI CTNAG 2 cut(s) 114, 283
DpnI GATC 2 cut(s) 231, 818
DpnII GATC 2 cut(s) 229, 816
EaeI YGGCCR 3 cut(s) 20, 33, 786
EagI CGGCCG 1 cut(s) 20
Ecl136II GAGCTC 2 cut(s) 97, 606
EclXI CGGCCG 1 cut(s) 20
Eco130I CCWWGG 3 cut(s) 57, 235, 297
Eco147I AGGCCT 2 cut(s) 86, 112
Eco24I GRGCYC 3 cut(s) 99, 214, 608
Eco31I GGTCTC 1 cut(s) 58
Eco47I GGWCC 2 cut(s) 301, 897
Eco52I CGGCCG 1 cut(s) 20
Eco53kI GAGCTC 2 cut(s) 97, 606
Eco57I CTGAAG 2 cut(s) 543, 908
Eco88I CYCGRG 1 cut(s) 688
EcoICRI GAGCTC 2 cut(s) 97, 606
EcoRII CCWGG 3 cut(s) 545, 721, 788
EcoT14I CCWWGG 3 cut(s) 57, 235, 297
EcoT38I GRGCYC 3 cut(s) 99, 214, 608
ErhI CCWWGG 3 cut(s) 57, 235, 297
FaeI CATG 8 cut(s) 40, 61, 301, 342, 355, 488, 509, 596
FaqI GGGAC 1 cut(s) 598
FatI CATG 8 cut(s) 36, 57, 297, 338, 351, 484, 505, 592
FbaI TGATCA 1 cut(s) 229
FokI GGATG 3 cut(s) 380, 767, 776
FriOI GRGCYC 3 cut(s) 99, 214, 608
FspBI CTAG 1 cut(s) 779
GlaI GCGC 1 cut(s) 65
HaeIII GGCC 7 cut(s) 22, 35, 86, 112, 248, 775, 788
HapII CCGG 2 cut(s) 19, 32
HhaI GCGC 1 cut(s) 66
Hin1II CATG 8 cut(s) 40, 61, 301, 342, 355, 488, 509, 596
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HpaI GTTAAC 1 cut(s) 258
HpaII CCGG 2 cut(s) 19, 32
HphI GGTGA 2 cut(s) 224, 689
Hpy166II GTNNAC 2 cut(s) 258, 458
Hpy188I TCNGA 2 cut(s) 562, 730
Hpy188III TCNNGA 3 cut(s) 100, 269, 906
Hpy8I GTNNAC 2 cut(s) 258, 458
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 5 cut(s) 52, 275, 356, 436, 574
HpyCH4III ACNGT 2 cut(s) 244, 516
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 4 cut(s) 342, 530, 611, 703
HpyF10VI GCNNNNNNNGC 7 cut(s) 19, 72, 209, 379, 494, 530, 608
HpyF3I CTNAG 2 cut(s) 114, 283
HpySE526I ACGT 1 cut(s) 462
Hsp92II CATG 8 cut(s) 40, 61, 301, 342, 355, 488, 509, 596
HspAI GCGC 1 cut(s) 64
Ksp22I TGATCA 1 cut(s) 229
KspAI GTTAAC 1 cut(s) 258
Kzo9I GATC 2 cut(s) 229, 816
LmnI GCTCC 2 cut(s) 61, 94
Lsp1109I GCAGC 8 cut(s) 78, 115, 385, 388, 391, 542, 715, 849
LweI GCATC 1 cut(s) 745
MaeI CTAG 1 cut(s) 779
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 2 cut(s) 310, 767
MalI GATC 2 cut(s) 231, 818
MbiI CCGCTC 1 cut(s) 25
MboI GATC 2 cut(s) 229, 816
MboII GAAGA 2 cut(s) 146, 901
MhlI GDGCHC 4 cut(s) 99, 214, 608, 697
MluCI AATT 1 cut(s) 427
MnlI CCTC 6 cut(s) 43, 102, 123, 363, 658, 697
MseI TTAA 2 cut(s) 219, 257
MslI CAYNNNNRTG 1 cut(s) 753
MspA1I CMGCKG 1 cut(s) 382
MspI CCGG 2 cut(s) 19, 32
MspR9I CCNGG 4 cut(s) 19, 547, 723, 790
MvaI CCWGG 3 cut(s) 547, 723, 790
MwoI GCNNNNNNNGC 7 cut(s) 19, 72, 209, 379, 494, 530, 608
NciI CCSGG 1 cut(s) 19
NcoI CCATGG 2 cut(s) 57, 297
NdeII GATC 2 cut(s) 229, 816
NlaIII CATG 8 cut(s) 40, 61, 301, 342, 355, 488, 509, 596
NlaIV GGNNCC 1 cut(s) 898
NmeAIII GCCGAG 1 cut(s) 457
NspI RCATGY 3 cut(s) 342, 488, 509
PaqCI CACCTGC 1 cut(s) 708
PceI AGGCCT 2 cut(s) 86, 112
PciI ACATGT 1 cut(s) 505
PflFI GACNNNGTC 2 cut(s) 50, 895
Ppu21I YACGTR 1 cut(s) 463
PscI ACATGT 1 cut(s) 505
Psp124BI GAGCTC 2 cut(s) 99, 608
Psp6I CCWGG 3 cut(s) 545, 721, 788
PspGI CCWGG 3 cut(s) 545, 721, 788
PspN4I GGNNCC 1 cut(s) 898
PspPI GGNCC 2 cut(s) 301, 897
PstI CTGCAG 3 cut(s) 532, 613, 705
PstNI CAGNNNCTG 1 cut(s) 382
PsyI GACNNNGTC 2 cut(s) 50, 895
PvuII CAGCTG 1 cut(s) 382
RsaI GTAC 3 cut(s) 180, 447, 465
RsaNI GTAC 3 cut(s) 179, 446, 464
RseI CAYNNNNRTG 1 cut(s) 753
SacI GAGCTC 2 cut(s) 99, 608
SaqAI TTAA 2 cut(s) 219, 257
Sau3AI GATC 2 cut(s) 229, 816
Sau96I GGNCC 2 cut(s) 301, 897
ScrFI CCNGG 4 cut(s) 19, 547, 723, 790
SduI GDGCHC 4 cut(s) 99, 214, 608, 697
SfaNI GCATC 1 cut(s) 745
SfcI CTRYAG 3 cut(s) 528, 609, 701
SinI GGWCC 2 cut(s) 301, 897
SmiMI CAYNNNNRTG 1 cut(s) 753
SmlI CTYRAG 2 cut(s) 98, 106
SmoI CTYRAG 2 cut(s) 98, 106
Sse9I AATT 1 cut(s) 427
SseBI AGGCCT 2 cut(s) 86, 112
SsiI CCGC 4 cut(s) 23, 131, 758, 785
SspI AATATT 1 cut(s) 137
SspMI CTAG 1 cut(s) 779
SstI GAGCTC 2 cut(s) 99, 608
StuI AGGCCT 2 cut(s) 86, 112
StyD4I CCNGG 4 cut(s) 17, 545, 721, 788
StyI CCWWGG 3 cut(s) 57, 235, 297
TaaI ACNGT 2 cut(s) 244, 516
TaiI ACGT 1 cut(s) 465
TaqI TCGA 4 cut(s) 45, 368, 715, 811
TasI AATT 1 cut(s) 427
TauI GCSGC 2 cut(s) 25, 788
Tru1I TTAA 2 cut(s) 219, 257
Tru9I TTAA 2 cut(s) 219, 257
TscAI CASTG 2 cut(s) 247, 532
TseI GCWGC 8 cut(s) 66, 128, 373, 376, 379, 530, 703, 837
TspDTI ATGAA 3 cut(s) 146, 340, 382
TspGWI ACGGA 1 cut(s) 889
TspRI CASTG 2 cut(s) 247, 532
Tth111I GACNNNGTC 2 cut(s) 50, 895
VpaK11BI GGWCC 2 cut(s) 301, 897
XceI RCATGY 3 cut(s) 342, 488, 509
XspI CTAG 1 cut(s) 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.