Rorug01G0260400

ABIL1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004948
Physical Location & Seq
Reverse (-)
37005107 .. 37006017
911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0260400.1

Sequence Viewer

Length: 372 bp
ATGGCAGTGGCACAATACTCGGCTCTTGCTCTGATTGCGTTTCTGGTTTCTCCGATCATGGTGATGGTGATGGTGATGGCAAATTCATACGAAGTTGACTGGTCAACTGAAATTGCTTCCAGTGGTTTTGCTCATGAAAACACTTTCTTTGCTGGAGATGTACTCAATTTTCATTACGATAAGAATTATCACAATGTGGTTGTAGCAACAGATAGTGATGCATTTGAACAATGCAACATGGAACCGAACTTAGGTTTCTATACAAATGGCAATGAAGCATTAACCTTGGTTGAAGCTGGATACTATTATTTCATGTGTGAGTATAACTGTGAATCTGATGGCATGAAGATGTCAATGTATGTGTACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.9

Weight (kDa)

4.05

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 109 9.6e-15 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 82
AdeI CACNNNGTG 1 cut(s) 196
AfaI GTAC 2 cut(s) 162, 365
AfiI CCNNNNNNNGG 1 cut(s) 251
AgsI TTSAA 2 cut(s) 227, 293
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
ApoI RAATTY 1 cut(s) 82
AsuHPI GGTGA 3 cut(s) 73, 79, 85
BccI CCATC 4 cut(s) 58, 64, 70, 332
BcgI CGANNNNNNTGC 1 cut(s) 34
BciVI GTATCC 1 cut(s) 293
BfuI GTATCC 1 cut(s) 293
BmiI GGNNCC 1 cut(s) 243
BmsI GCATC 1 cut(s) 208
BplI GAGNNNNNCTC 2 cut(s) 147, 179
BpmI CTGGAG 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 285
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse1I ACTGG 2 cut(s) 104, 120
Bse3DI GCAATG 1 cut(s) 277
BseDI CCNNGG 1 cut(s) 285
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMI GCAATG 1 cut(s) 277
BseNI ACTGG 2 cut(s) 104, 120
BslI CCNNNNNNNGG 1 cut(s) 251
Bsp1407I TGTACA 1 cut(s) 363
Bsp143I GATC 1 cut(s) 54
BspHI TCATGA 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 277
BsrGI TGTACA 1 cut(s) 363
BsrI ACTGG 2 cut(s) 104, 120
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 1 cut(s) 54
BssT1I CCWWGG 1 cut(s) 285
Bst4CI ACNGT 1 cut(s) 329
BstAUI TGTACA 1 cut(s) 363
BstDEI CTNAG 1 cut(s) 250
BstKTI GATC 1 cut(s) 57
BstMBI GATC 1 cut(s) 54
BstMWI GCNNNNNNNGC 1 cut(s) 35
BsuI GTATCC 1 cut(s) 293
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 2 cut(s) 12, 127
CciI TCATGA 1 cut(s) 133
Csp6I GTAC 2 cut(s) 161, 364
CviAII CATG 5 cut(s) 58, 134, 238, 313, 343
CviJI RGCY 2 cut(s) 23, 296
CviKI_1 RGCY 2 cut(s) 23, 296
CviQI GTAC 2 cut(s) 161, 364
DdeI CTNAG 1 cut(s) 250
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
DraIII CACNNNGTG 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 285
EcoT22I ATGCAT 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 5 cut(s) 61, 137, 241, 316, 346
FaiI YATR 9 cut(s) 59, 88, 135, 239, 261, 314, 324, 344, 360
FatI CATG 5 cut(s) 57, 133, 237, 312, 342
GsuI CTGGAG 1 cut(s) 174
Hin1II CATG 5 cut(s) 61, 137, 241, 316, 346
HincII GTYRAC 2 cut(s) 97, 105
HindII GTYRAC 2 cut(s) 97, 105
HinfI GANTC 1 cut(s) 332
HphI GGTGA 3 cut(s) 73, 79, 85
Hpy166II GTNNAC 3 cut(s) 97, 105, 364
Hpy188I TCNGA 3 cut(s) 33, 54, 337
Hpy188III TCNNGA 1 cut(s) 134
Hpy8I GTNNAC 3 cut(s) 97, 105, 364
HpyCH4III ACNGT 1 cut(s) 329
HpyCH4V TGCA 2 cut(s) 221, 234
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 250
Hsp92II CATG 5 cut(s) 61, 137, 241, 316, 346
Kzo9I GATC 1 cut(s) 54
LpnPI CCDG 5 cut(s) 29, 85, 133, 138, 282
LweI GCATC 1 cut(s) 208
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MboII GAAGA 1 cut(s) 358
MluCI AATT 5 cut(s) 82, 111, 166, 184, 367
Mph1103I ATGCAT 1 cut(s) 223
MseI TTAA 2 cut(s) 281, 370
MslI CAYNNNNRTG 2 cut(s) 62, 347
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 1 cut(s) 54
NlaIII CATG 5 cut(s) 61, 137, 241, 316, 346
NlaIV GGNNCC 1 cut(s) 243
NsiI ATGCAT 1 cut(s) 223
PagI TCATGA 1 cut(s) 133
PfeI GAWTC 1 cut(s) 332
PspN4I GGNNCC 1 cut(s) 243
RsaI GTAC 2 cut(s) 162, 365
RsaNI GTAC 2 cut(s) 161, 364
RseI CAYNNNNRTG 2 cut(s) 62, 347
SaqAI TTAA 2 cut(s) 281, 370
Sau3AI GATC 1 cut(s) 54
SetI ASST 3 cut(s) 256, 287, 298
SfaNI GCATC 1 cut(s) 208
SmiMI CAYNNNNRTG 2 cut(s) 62, 347
Sse9I AATT 5 cut(s) 82, 111, 166, 184, 367
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 1 cut(s) 329
TasI AATT 5 cut(s) 82, 111, 166, 184, 367
TatI WGTACW 2 cut(s) 160, 363
TfiI GAWTC 1 cut(s) 332
Tru1I TTAA 2 cut(s) 281, 370
Tru9I TTAA 2 cut(s) 281, 370
TscAI CASTG 2 cut(s) 12, 127
TspDTI ATGAA 6 cut(s) 75, 150, 161, 288, 301, 359
TspRI CASTG 2 cut(s) 12, 127
XapI RAATTY 1 cut(s) 82
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.