Rw1G024500

ABIL1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0004948
Physical Location & Seq
Forward (+)
50676270 .. 50679361
3092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G024500.1

Sequence Viewer

Length: 897 bp
ATGGAGTTAGAGCAATCCCGGCCGTTCAATCCGGCCATGACCTTCGACGAGGTCTCCATGGAGCGCAGCAAGAGCTTCGTCAAGGCCTTACAGGAGCTCAAGAACTTGAGGCCTCAGCTTTACTCTGCTGCGGAATATTGTGAAAAGTCGTATCTTCATAGCGAGCAGAAACAAATGGTACTGGATAACCTGAAAGATTATGCTGTGCGAGCCCTTGTTAATGCTGTTGATCACCTTGGCACTGTGGCCTACAAGTTAACTGACCTTCTTGACCAGCAAACCTTAGATGTTTCAACCATGGACCTGAAAGTTACTTGCCTAAACCAGAAACTTCTTACATGCAAAACATTCATGGATAAAGAAGGTTCGAGGCAGCAGCAGCTGTTGTCATTCATCCCAAGACATCACAAGCACTACATTTTACCCAATTCTGTCAATAAGAAGGTACATTTCAGTCCACACGTGCAGACTGATACTCGGCAACATGCTTATCAAGCAAGACCACATGTTCAACCGTCAACAAAAACTCTTTCCTGGCATTTAGCTTCAGAAACAAAATCAACCTTGAAGGGGACTTCGCATGGTCTGGCTAGCTCTGCAGACACAAAAGTTTCTGTAAATACATCTGGCACTTTCCAGCTTTTAGATAATGAGGGGAGTGCCACTACGAAATCCTCGGGTGCTCACCTGCAGCTACCAAGTCGAGTTCCTGGTTCTGAAGCATTTGTTGCTGGACATAGGGATGCGGTGGATGGTTACAGGCCACTAGGGGCGGCCAGGTCATTTGACAACCAAAATCGACAGATCGTGCGAGTTCCTGTTCGCAGCAAAAGTCTGCTATCAGCTTTTTTTGTCAAACAGAAAAGCACAAAGCTGAAGACTCGGTCCGTTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

298

Amino Acids

33.41

Weight (kDa)

9.63

Isoelectric Point (pI)

41.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 696
Acc36I ACCTGC 1 cut(s) 696
AciI CCGC 3 cut(s) 131, 746, 773
AcoI YGGCCR 3 cut(s) 20, 33, 774
AcuI CTGAAG 3 cut(s) 531, 738, 896
AcvI CACGTG 1 cut(s) 463
AfaI GTAC 2 cut(s) 180, 447
AfiI CCNNNNNNNGG 1 cut(s) 570
AflIII ACRYGT 2 cut(s) 460, 505
AgsI TTSAA 4 cut(s) 28, 294, 512, 568
AjnI CCWGG 3 cut(s) 533, 709, 776
Alw21I GWGCWC 2 cut(s) 99, 685
Alw26I GTCTC 1 cut(s) 58
AlwNI CAGNNNCTG 1 cut(s) 382
Ama87I CYCGRG 1 cut(s) 676
AoxI GGCC 7 cut(s) 20, 33, 84, 110, 246, 761, 774
ApeKI GCWGC 7 cut(s) 66, 128, 373, 376, 379, 691, 825
AspLEI GCGC 1 cut(s) 66
AspS9I GGNCC 2 cut(s) 301, 885
AsuC2I CCSGG 1 cut(s) 19
AsuHPI GGTGA 2 cut(s) 224, 677
AsuNHI GCTAGC 1 cut(s) 590
AvaI CYCGRG 1 cut(s) 676
AvaII GGWCC 2 cut(s) 301, 885
BanII GRGCYC 2 cut(s) 99, 214
BbrPI CACGTG 1 cut(s) 463
BbsI GAAGAC 1 cut(s) 884
Bbv12I GWGCWC 2 cut(s) 99, 685
BbvCI CCTCAGC 1 cut(s) 114
BbvI GCAGC 7 cut(s) 78, 115, 385, 388, 391, 703, 837
BccI CCATC 1 cut(s) 746
BceAI ACGGC 1 cut(s) 7
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BciT130I CCWGG 3 cut(s) 535, 711, 778
BclI TGATCA 1 cut(s) 229
BcnI CCSGG 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 58
BfaI CTAG 2 cut(s) 591, 767
BfmI CTRYAG 2 cut(s) 597, 689
BfuAI ACCTGC 1 cut(s) 696
BisI GCNGC 8 cut(s) 67, 129, 374, 377, 380, 692, 774, 826
BlsI GCNGC 8 cut(s) 68, 130, 375, 378, 381, 693, 775, 827
Bme1390I CCNGG 4 cut(s) 19, 535, 711, 778
Bme18I GGWCC 2 cut(s) 301, 885
BmeT110I CYCGRG 1 cut(s) 676
BmgT120I GGNCC 2 cut(s) 301, 885
BmrFI CCNGG 4 cut(s) 19, 535, 711, 778
BmsI GCATC 1 cut(s) 733
BmtI GCTAGC 1 cut(s) 594
BpiI GAAGAC 1 cut(s) 884
Bpu10I CCTNAGC 1 cut(s) 114
BpuEI CTTGAG 2 cut(s) 83, 127
BpuMI CCSGG 1 cut(s) 19
BsaAI YACGTR 1 cut(s) 463
BsaI GGTCTC 1 cut(s) 58
BsaJI CCNNGG 4 cut(s) 57, 235, 297, 675
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 1 cut(s) 570
Bse1I ACTGG 1 cut(s) 186
BseBI CCWGG 3 cut(s) 535, 711, 778
BseDI CCNNGG 4 cut(s) 57, 235, 297, 675
BseGI GGATG 3 cut(s) 393, 748, 757
BseLI CCNNNNNNNGG 1 cut(s) 570
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 186
BseX3I CGGCCG 1 cut(s) 20
BseXI GCAGC 7 cut(s) 78, 115, 385, 388, 391, 703, 837
BsgI GTGCAG 1 cut(s) 485
Bsh1285I CGRYCG 1 cut(s) 23
BshFI GGCC 7 cut(s) 22, 35, 86, 112, 248, 763, 776
BsiEI CGRYCG 1 cut(s) 23
BsiHKAI GWGCWC 2 cut(s) 99, 685
BsiHKCI CYCGRG 1 cut(s) 676
BsiSI CCGG 2 cut(s) 19, 32
BslFI GGGAC 1 cut(s) 586
BslI CCNNNNNNNGG 1 cut(s) 570
BsmAI GTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 586
BsnI GGCC 7 cut(s) 22, 35, 86, 112, 248, 763, 776
Bso31I GGTCTC 1 cut(s) 58
BsoBI CYCGRG 1 cut(s) 676
Bsp1286I GDGCHC 3 cut(s) 99, 214, 685
Bsp143I GATC 2 cut(s) 229, 804
Bsp19I CCATGG 2 cut(s) 57, 297
BspACI CCGC 3 cut(s) 131, 746, 773
BspANI GGCC 7 cut(s) 22, 35, 86, 112, 248, 763, 776
BspCNI CTCAG 1 cut(s) 127
BspMAI CTGCAG 2 cut(s) 601, 693
BspMI ACCTGC 1 cut(s) 696
BspOI GCTAGC 1 cut(s) 594
BspTNI GGTCTC 1 cut(s) 58
BsrI ACTGG 1 cut(s) 186
BssECI CCNNGG 4 cut(s) 57, 235, 297, 675
BssMI GATC 2 cut(s) 229, 804
BssT1I CCWWGG 3 cut(s) 57, 235, 297
Bst2UI CCWGG 3 cut(s) 535, 711, 778
Bst4CI ACNGT 2 cut(s) 244, 516
BstAPI GCANNNNNTGC 1 cut(s) 728
BstBAI YACGTR 1 cut(s) 463
BstC8I GCNNGC 3 cut(s) 164, 210, 592
BstDEI CTNAG 2 cut(s) 114, 283
BstDSI CCRYGG 2 cut(s) 57, 297
BstF5I GGATG 3 cut(s) 393, 748, 757
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 2 cut(s) 232, 807
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 2 cut(s) 229, 804
BstMCI CGRYCG 1 cut(s) 23
BstMWI GCNNNNNNNGC 7 cut(s) 19, 72, 209, 379, 494, 596, 728
BstNI CCWGG 3 cut(s) 535, 711, 778
BstNSI RCATGY 3 cut(s) 342, 488, 509
BstSCI CCNGG 4 cut(s) 17, 533, 709, 776
BstSFI CTRYAG 2 cut(s) 597, 689
BstV1I GCAGC 7 cut(s) 78, 115, 385, 388, 391, 703, 837
BstV2I GAAGAC 1 cut(s) 884
BstZI CGGCCG 1 cut(s) 20
BsuRI GGCC 7 cut(s) 22, 35, 86, 112, 248, 763, 776
BtgI CCRYGG 2 cut(s) 57, 297
BtsCI GGATG 3 cut(s) 393, 748, 757
BtsIMutI CAGTG 1 cut(s) 240
BveI ACCTGC 1 cut(s) 696
Cac8I GCNNGC 3 cut(s) 164, 210, 592
CaiI CAGNNNCTG 1 cut(s) 382
CfoI GCGC 1 cut(s) 66
Cfr13I GGNCC 2 cut(s) 301, 885
CpoI CGGWCCG 1 cut(s) 885
Csp6I GTAC 2 cut(s) 179, 446
CspI CGGWCCG 1 cut(s) 885
CviAII CATG 8 cut(s) 37, 58, 298, 339, 352, 485, 506, 581
CviQI GTAC 2 cut(s) 179, 446
DdeI CTNAG 2 cut(s) 114, 283
DpnI GATC 2 cut(s) 231, 806
DpnII GATC 2 cut(s) 229, 804
EaeI YGGCCR 3 cut(s) 20, 33, 774
EagI CGGCCG 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 97
EclXI CGGCCG 1 cut(s) 20
Eco130I CCWWGG 3 cut(s) 57, 235, 297
Eco147I AGGCCT 2 cut(s) 86, 112
Eco24I GRGCYC 2 cut(s) 99, 214
Eco31I GGTCTC 1 cut(s) 58
Eco47I GGWCC 2 cut(s) 301, 885
Eco52I CGGCCG 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 97
Eco57I CTGAAG 3 cut(s) 531, 738, 896
Eco72I CACGTG 1 cut(s) 463
Eco88I CYCGRG 1 cut(s) 676
EcoICRI GAGCTC 1 cut(s) 97
EcoRII CCWGG 3 cut(s) 533, 709, 776
EcoT14I CCWWGG 3 cut(s) 57, 235, 297
EcoT38I GRGCYC 2 cut(s) 99, 214
ErhI CCWWGG 3 cut(s) 57, 235, 297
FaeI CATG 8 cut(s) 40, 61, 301, 342, 355, 488, 509, 584
FaqI GGGAC 1 cut(s) 586
FatI CATG 8 cut(s) 36, 57, 297, 338, 351, 484, 505, 580
FbaI TGATCA 1 cut(s) 229
Fnu4HI GCNGC 8 cut(s) 67, 129, 374, 377, 380, 692, 774, 826
FokI GGATG 3 cut(s) 380, 755, 764
FriOI GRGCYC 2 cut(s) 99, 214
Fsp4HI GCNGC 8 cut(s) 67, 129, 374, 377, 380, 692, 774, 826
FspBI CTAG 2 cut(s) 591, 767
GlaI GCGC 1 cut(s) 65
GluI GCNGC 8 cut(s) 67, 129, 374, 377, 380, 692, 774, 826
HaeIII GGCC 7 cut(s) 22, 35, 86, 112, 248, 763, 776
HapII CCGG 2 cut(s) 19, 32
HhaI GCGC 1 cut(s) 66
Hin1II CATG 8 cut(s) 40, 61, 301, 342, 355, 488, 509, 584
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HincII GTYRAC 2 cut(s) 258, 519
HindII GTYRAC 2 cut(s) 258, 519
HinfI GANTC 1 cut(s) 880
HpaI GTTAAC 1 cut(s) 258
HpaII CCGG 2 cut(s) 19, 32
HphI GGTGA 2 cut(s) 224, 677
Hpy166II GTNNAC 3 cut(s) 258, 458, 519
Hpy188I TCNGA 2 cut(s) 550, 718
Hpy188III TCNNGA 3 cut(s) 100, 269, 894
Hpy8I GTNNAC 3 cut(s) 258, 458, 519
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 5 cut(s) 52, 275, 356, 436, 562
HpyCH4III ACNGT 2 cut(s) 244, 516
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 4 cut(s) 342, 466, 599, 691
HpyF10VI GCNNNNNNNGC 7 cut(s) 19, 72, 209, 379, 494, 596, 728
HpyF3I CTNAG 2 cut(s) 114, 283
HpySE526I ACGT 1 cut(s) 462
Hsp92II CATG 8 cut(s) 40, 61, 301, 342, 355, 488, 509, 584
HspAI GCGC 1 cut(s) 64
Ksp22I TGATCA 1 cut(s) 229
KspAI GTTAAC 1 cut(s) 258
Kzo9I GATC 2 cut(s) 229, 804
LmnI GCTCC 2 cut(s) 61, 94
Lsp1109I GCAGC 7 cut(s) 78, 115, 385, 388, 391, 703, 837
LweI GCATC 1 cut(s) 733
MaeI CTAG 2 cut(s) 591, 767
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 2 cut(s) 310, 755
MalI GATC 2 cut(s) 231, 806
MboI GATC 2 cut(s) 229, 804
MboII GAAGA 2 cut(s) 146, 889
MhlI GDGCHC 3 cut(s) 99, 214, 685
MluCI AATT 1 cut(s) 427
MlyI GAGTC 1 cut(s) 874
MnlI CCTC 6 cut(s) 43, 102, 123, 363, 646, 685
MseI TTAA 2 cut(s) 219, 257
MslI CAYNNNNRTG 1 cut(s) 741
MspA1I CMGCKG 1 cut(s) 382
MspI CCGG 2 cut(s) 19, 32
MspR9I CCNGG 4 cut(s) 19, 535, 711, 778
MvaI CCWGG 3 cut(s) 535, 711, 778
MwoI GCNNNNNNNGC 7 cut(s) 19, 72, 209, 379, 494, 596, 728
NciI CCSGG 1 cut(s) 19
NcoI CCATGG 2 cut(s) 57, 297
NdeII GATC 2 cut(s) 229, 804
NheI GCTAGC 1 cut(s) 590
NlaIII CATG 8 cut(s) 40, 61, 301, 342, 355, 488, 509, 584
NmeAIII GCCGAG 1 cut(s) 457
NspI RCATGY 3 cut(s) 342, 488, 509
PaqCI CACCTGC 1 cut(s) 696
PceI AGGCCT 2 cut(s) 86, 112
PciI ACATGT 1 cut(s) 505
PflFI GACNNNGTC 2 cut(s) 50, 883
PkrI GCNGC 8 cut(s) 68, 130, 375, 378, 381, 693, 775, 827
PleI GAGTC 1 cut(s) 874
PmaCI CACGTG 1 cut(s) 463
PmlI CACGTG 1 cut(s) 463
PpsI GAGTC 1 cut(s) 874
Ppu21I YACGTR 1 cut(s) 463
PscI ACATGT 1 cut(s) 505
Psp124BI GAGCTC 1 cut(s) 99
Psp6I CCWGG 3 cut(s) 533, 709, 776
PspCI CACGTG 1 cut(s) 463
PspGI CCWGG 3 cut(s) 533, 709, 776
PspPI GGNCC 2 cut(s) 301, 885
PstI CTGCAG 2 cut(s) 601, 693
PstNI CAGNNNCTG 1 cut(s) 382
PsyI GACNNNGTC 2 cut(s) 50, 883
PvuII CAGCTG 1 cut(s) 382
RsaI GTAC 2 cut(s) 180, 447
RsaNI GTAC 2 cut(s) 179, 446
RseI CAYNNNNRTG 1 cut(s) 741
Rsr2I CGGWCCG 1 cut(s) 885
RsrII CGGWCCG 1 cut(s) 885
SacI GAGCTC 1 cut(s) 99
SaqAI TTAA 2 cut(s) 219, 257
SatI GCNGC 8 cut(s) 67, 129, 374, 377, 380, 692, 774, 826
Sau3AI GATC 2 cut(s) 229, 804
Sau96I GGNCC 2 cut(s) 301, 885
SchI GAGTC 1 cut(s) 874
ScrFI CCNGG 4 cut(s) 19, 535, 711, 778
SduI GDGCHC 3 cut(s) 99, 214, 685
SfaNI GCATC 1 cut(s) 733
SfcI CTRYAG 2 cut(s) 597, 689
SinI GGWCC 2 cut(s) 301, 885
SmiMI CAYNNNNRTG 1 cut(s) 741
SmlI CTYRAG 2 cut(s) 98, 106
SmoI CTYRAG 2 cut(s) 98, 106
Sse9I AATT 1 cut(s) 427
SseBI AGGCCT 2 cut(s) 86, 112
SsiI CCGC 3 cut(s) 131, 746, 773
SspI AATATT 1 cut(s) 137
SspMI CTAG 2 cut(s) 591, 767
SstI GAGCTC 1 cut(s) 99
StuI AGGCCT 2 cut(s) 86, 112
StyD4I CCNGG 4 cut(s) 17, 533, 709, 776
StyI CCWWGG 3 cut(s) 57, 235, 297
TaaI ACNGT 2 cut(s) 244, 516
TaiI ACGT 1 cut(s) 465
TaqI TCGA 4 cut(s) 45, 368, 703, 799
TaqII GACCGA 1 cut(s) 873
TasI AATT 1 cut(s) 427
TauI GCSGC 1 cut(s) 776
Tru1I TTAA 2 cut(s) 219, 257
Tru9I TTAA 2 cut(s) 219, 257
TscAI CASTG 1 cut(s) 247
TseI GCWGC 7 cut(s) 66, 128, 373, 376, 379, 691, 825
TspDTI ATGAA 3 cut(s) 146, 340, 382
TspGWI ACGGA 1 cut(s) 877
TspRI CASTG 1 cut(s) 247
Tth111I GACNNNGTC 2 cut(s) 50, 883
VpaK11BI GGWCC 2 cut(s) 301, 885
XceI RCATGY 3 cut(s) 342, 488, 509
XspI CTAG 2 cut(s) 591, 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.