pycom01g10230

ABIL1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0004948
Physical Location & Seq
Forward (+)
11042341 .. 11044520
2180 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g10230.7

Sequence Viewer

Length: 921 bp
ATGGAGCTGGAGCAGCACCAACCGGGCAACCCGGCGATGACCTTCGACGAGGTCTCCATGGAGCGCAGCAAGAGCTTCGTCAAGGCCCTGCAGGAGCTCAAGAACTTAAGGCCTCAGCTTTATTCTGCTGCGGAATATTGCGAAAAATCCTATCTTCATAGCGAACAGAAACAAATGGTACTGGATAACCTGAAAGATTATGCTGTGCGGGCCCTTGTTAATGCCGTTGATCACCTTGGCACTGTGGCTTACAAGTTAACTGACCTTCTTGATCAGCAAACCTCAGATGTCTCAAAGATCGATCTGAAAGTTACTTGCCTAAATCAGAAACTTCTTACATGCCAAACATACATGGACAAAGAAGGGTCGAGGCAGCATCAGTTGTTGGCATTCATTCCGAGACATCACAAACACTACATTTTACCAAATTCCATGAATAAGAAGGTACATTTTAGTCCACATGTACAGACTGACACTAGGCAACATCCTTATCAAGCAAGAGCAGATCTTCAGCTTTCAAGCGCTGCTGCATCAAAAACTCTTTCTTGGCATTTAGCTTCAGAAACGAAATCAACCTTGAAGGGGACTCCACAGGCTCAGACTAGCATTGAAGACACAAAAATTTCTGTAAACACTGCTGGTGTTTTCCAGCTTGTAGAAAATGAAGAAGGGAGTGCCTCTAAATCCTTGGCAATTCAGCTTCAGCAACCAAGTGGATTACCTAATTCTGGCGGGGTTAAGCAAACATTGGGTGCTGGACACAGGGAAGCAGTAGATGGTTCGAAACCAATGACGGCGTTCAGGTCATTTGAGAACCCAAGACGGGACACAGTGCGTGTCCCCGTTCGCAGCAAAAGTGTGCTATCGGCGTTCTTTGTCAAACAGAAATCGAATAAGCTGAAGGCTGGATCCGTCTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

307

Amino Acids

34.09

Weight (kDa)

9.33

Isoelectric Point (pI)

39.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 131, 208, 732
AclWI GGATC 2 cut(s) 903, 916
AcsI RAATTY 2 cut(s) 427, 621
AcuI CTGAAG 4 cut(s) 494, 543, 686, 920
AfaI GTAC 3 cut(s) 180, 447, 465
AfeI AGCGCT 1 cut(s) 523
AfiI CCNNNNNNNGG 3 cut(s) 582, 728, 823
AflII CTTAAG 1 cut(s) 106
AflIII ACRYGT 1 cut(s) 460
AgsI TTSAA 3 cut(s) 519, 580, 611
AluBI AGCT 9 cut(s) 7, 75, 97, 118, 514, 557, 652, 700, 898
AluI AGCT 9 cut(s) 7, 75, 97, 118, 514, 557, 652, 700, 898
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 3 cut(s) 58, 295, 394
AlwI GGATC 2 cut(s) 903, 916
Aor51HI AGCGCT 1 cut(s) 523
AoxI GGCC 3 cut(s) 84, 110, 210
ApaI GGGCCC 1 cut(s) 214
ApeKI GCWGC 7 cut(s) 13, 66, 128, 373, 524, 527, 849
ApoI RAATTY 2 cut(s) 427, 621
AspLEI GCGC 2 cut(s) 66, 524
AspS9I GGNCC 3 cut(s) 85, 210, 211
AsuC2I CCSGG 2 cut(s) 24, 32
AsuHPI GGTGA 1 cut(s) 224
AsuII TTCGAA 1 cut(s) 782
BaeGI GKGCMC 1 cut(s) 214
BamHI GGATCC 1 cut(s) 908
BanII GRGCYC 2 cut(s) 99, 214
BauI CACGAG 1 cut(s) 916
BbsI GAAGAC 1 cut(s) 618
Bbv12I GWGCWC 1 cut(s) 99
BbvCI CCTCAGC 1 cut(s) 114
BbvI GCAGC 7 cut(s) 25, 78, 115, 385, 511, 514, 861
BccI CCATC 1 cut(s) 770
BceAI ACGGC 2 cut(s) 209, 810
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BclI TGATCA 2 cut(s) 229, 271
BcnI CCSGG 2 cut(s) 24, 32
BcoDI GTCTC 3 cut(s) 58, 295, 394
BfaI CTAG 2 cut(s) 477, 603
BfmI CTRYAG 1 cut(s) 89
BfoI RGCGCY 1 cut(s) 525
BfrI CTTAAG 1 cut(s) 106
BglII AGATCT 1 cut(s) 505
BisI GCNGC 7 cut(s) 14, 67, 129, 374, 525, 528, 850
BlsI GCNGC 7 cut(s) 15, 68, 130, 375, 526, 529, 851
Bme1390I CCNGG 2 cut(s) 24, 32
BmgT120I GGNCC 3 cut(s) 85, 210, 211
BmiI GGNNCC 2 cut(s) 212, 910
BmrFI CCNGG 2 cut(s) 24, 32
BmsI GCATC 2 cut(s) 385, 539
BpiI GAAGAC 1 cut(s) 618
BpmI CTGGAG 1 cut(s) 29
Bpu10I CCTNAGC 1 cut(s) 114
Bpu14I TTCGAA 1 cut(s) 782
BpuEI CTTGAG 1 cut(s) 83
BpuMI CCSGG 2 cut(s) 24, 32
Bsa29I ATCGAT 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 58
BsaJI CCNNGG 3 cut(s) 57, 235, 687
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 3 cut(s) 582, 728, 823
Bse1I ACTGG 1 cut(s) 186
BseCI ATCGAT 1 cut(s) 300
BseDI CCNNGG 3 cut(s) 57, 235, 687
BseGI GGATG 1 cut(s) 484
BseLI CCNNNNNNNGG 3 cut(s) 582, 728, 823
BseMII CTCAG 3 cut(s) 128, 297, 611
BseNI ACTGG 1 cut(s) 186
BseSI GKGCMC 1 cut(s) 214
BseXI GCAGC 7 cut(s) 25, 78, 115, 385, 511, 514, 861
BshFI GGCC 3 cut(s) 86, 112, 212
BshVI ATCGAT 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 99
BsiSI CCGG 2 cut(s) 23, 32
BslFI GGGAC 3 cut(s) 598, 824, 839
BslI CCNNNNNNNGG 3 cut(s) 582, 728, 823
BsmAI GTCTC 3 cut(s) 58, 295, 394
BsmFI GGGAC 3 cut(s) 598, 824, 839
BsmI GAATGC 1 cut(s) 389
BsnI GGCC 3 cut(s) 86, 112, 212
Bso31I GGTCTC 1 cut(s) 58
Bsp119I TTCGAA 1 cut(s) 782
Bsp120I GGGCCC 1 cut(s) 210
Bsp1286I GDGCHC 2 cut(s) 99, 214
Bsp1407I TGTACA 1 cut(s) 463
Bsp143I GATC 6 cut(s) 229, 271, 297, 301, 505, 908
Bsp19I CCATGG 1 cut(s) 57
BspACI CCGC 3 cut(s) 131, 208, 732
BspANI GGCC 3 cut(s) 86, 112, 212
BspCNI CTCAG 3 cut(s) 127, 296, 610
BspDI ATCGAT 1 cut(s) 300
BspLI GGNNCC 2 cut(s) 212, 910
BspMAI CTGCAG 1 cut(s) 93
BspPI GGATC 2 cut(s) 903, 916
BspT104I TTCGAA 1 cut(s) 782
BspTI CTTAAG 1 cut(s) 106
BspTNI GGTCTC 1 cut(s) 58
BsrGI TGTACA 1 cut(s) 463
BsrI ACTGG 1 cut(s) 186
BssECI CCNNGG 3 cut(s) 57, 235, 687
BssMI GATC 6 cut(s) 229, 271, 297, 301, 505, 908
BssSI CACGAG 1 cut(s) 916
BssT1I CCWWGG 3 cut(s) 57, 235, 687
Bst2BI CACGAG 1 cut(s) 916
Bst4CI ACNGT 2 cut(s) 244, 832
BstAFI CTTAAG 1 cut(s) 106
BstAUI TGTACA 1 cut(s) 463
BstBI TTCGAA 1 cut(s) 782
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 3 cut(s) 114, 283, 597
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 1 cut(s) 484
BstH2I RGCGCY 1 cut(s) 525
BstHHI GCGC 2 cut(s) 66, 524
BstKTI GATC 6 cut(s) 232, 274, 300, 304, 508, 911
BstMAI GTCTC 3 cut(s) 58, 295, 394
BstMBI GATC 6 cut(s) 229, 271, 297, 301, 505, 908
BstMWI GCNNNNNNNGC 3 cut(s) 13, 72, 209
BstNSI RCATGY 2 cut(s) 342, 464
BstSCI CCNGG 2 cut(s) 22, 30
BstSFI CTRYAG 1 cut(s) 89
BstSLI GKGCMC 1 cut(s) 214
BstV1I GCAGC 7 cut(s) 25, 78, 115, 385, 511, 514, 861
BstV2I GAAGAC 1 cut(s) 618
BstX2I RGATCY 2 cut(s) 505, 908
BstYI RGATCY 2 cut(s) 505, 908
Bsu15I ATCGAT 1 cut(s) 300
BsuRI GGCC 3 cut(s) 86, 112, 212
BsuTUI ATCGAT 1 cut(s) 300
BtgI CCRYGG 1 cut(s) 57
BtgZI GCGATG 1 cut(s) 50
BtsCI GGATG 1 cut(s) 484
BtsI GCAGTG 1 cut(s) 633
BtsIMutI CAGTG 3 cut(s) 240, 633, 837
Cac8I GCNNGC 1 cut(s) 210
CfoI GCGC 2 cut(s) 66, 524
Cfr13I GGNCC 3 cut(s) 85, 210, 211
ClaI ATCGAT 1 cut(s) 300
Csp6I GTAC 3 cut(s) 179, 446, 464
CviAII CATG 5 cut(s) 58, 339, 352, 433, 461
CviQI GTAC 3 cut(s) 179, 446, 464
DdeI CTNAG 3 cut(s) 114, 283, 597
DpnI GATC 6 cut(s) 231, 273, 299, 303, 507, 910
DpnII GATC 6 cut(s) 229, 271, 297, 301, 505, 908
Ecl136II GAGCTC 1 cut(s) 97
Eco130I CCWWGG 3 cut(s) 57, 235, 687
Eco147I AGGCCT 1 cut(s) 112
Eco24I GRGCYC 2 cut(s) 99, 214
Eco31I GGTCTC 1 cut(s) 58
Eco47III AGCGCT 1 cut(s) 523
Eco53kI GAGCTC 1 cut(s) 97
Eco57I CTGAAG 4 cut(s) 494, 543, 686, 920
EcoICRI GAGCTC 1 cut(s) 97
EcoO109I RGGNCCY 2 cut(s) 85, 211
EcoT14I CCWWGG 3 cut(s) 57, 235, 687
EcoT38I GRGCYC 2 cut(s) 99, 214
ErhI CCWWGG 3 cut(s) 57, 235, 687
FaeI CATG 5 cut(s) 61, 342, 355, 436, 464
FaiI YATR 8 cut(s) 59, 159, 201, 340, 349, 353, 434, 462
FaqI GGGAC 3 cut(s) 598, 824, 839
FatI CATG 5 cut(s) 57, 338, 351, 432, 460
FauI CCCGC 2 cut(s) 201, 725
FbaI TGATCA 2 cut(s) 229, 271
Fnu4HI GCNGC 7 cut(s) 14, 67, 129, 374, 525, 528, 850
FokI GGATG 1 cut(s) 471
FriOI GRGCYC 2 cut(s) 99, 214
Fsp4HI GCNGC 7 cut(s) 14, 67, 129, 374, 525, 528, 850
FspBI CTAG 2 cut(s) 477, 603
GlaI GCGC 2 cut(s) 65, 523
GluI GCNGC 7 cut(s) 14, 67, 129, 374, 525, 528, 850
GsuI CTGGAG 1 cut(s) 29
HaeII RGCGCY 1 cut(s) 525
HaeIII GGCC 3 cut(s) 86, 112, 212
HapII CCGG 2 cut(s) 23, 32
HhaI GCGC 2 cut(s) 66, 524
Hin1II CATG 5 cut(s) 61, 342, 355, 436, 464
Hin6I GCGC 2 cut(s) 64, 522
HinP1I GCGC 2 cut(s) 64, 522
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HinfI GANTC 1 cut(s) 586
HpaI GTTAAC 1 cut(s) 258
HpaII CCGG 2 cut(s) 23, 32
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 3 cut(s) 258, 458, 631
Hpy188I TCNGA 6 cut(s) 286, 306, 327, 399, 562, 600
Hpy188III TCNNGA 3 cut(s) 100, 269, 918
Hpy8I GTNNAC 3 cut(s) 258, 458, 631
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 7 cut(s) 52, 275, 356, 436, 574, 662, 895
HpyCH4III ACNGT 2 cut(s) 244, 832
HpyCH4V TGCA 2 cut(s) 91, 530
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 72, 209
HpyF3I CTNAG 3 cut(s) 114, 283, 597
Hsp92II CATG 5 cut(s) 61, 342, 355, 436, 464
HspAI GCGC 2 cut(s) 64, 522
Ksp22I TGATCA 2 cut(s) 229, 271
KspAI GTTAAC 1 cut(s) 258
Kzo9I GATC 6 cut(s) 229, 271, 297, 301, 505, 908
LmnI GCTCC 4 cut(s) 4, 10, 61, 94
Lsp1109I GCAGC 7 cut(s) 25, 78, 115, 385, 511, 514, 861
LweI GCATC 2 cut(s) 385, 539
MaeI CTAG 2 cut(s) 477, 603
MaeIII GTNAC 1 cut(s) 310
MalI GATC 6 cut(s) 231, 273, 299, 303, 507, 910
MboI GATC 6 cut(s) 229, 271, 297, 301, 505, 908
MboII GAAGA 4 cut(s) 146, 500, 623, 677
MflI RGATCY 2 cut(s) 505, 908
MhlI GDGCHC 2 cut(s) 99, 214
MluCI AATT 4 cut(s) 427, 621, 693, 724
MlyI GAGTC 1 cut(s) 580
MnlI CCTC 5 cut(s) 43, 123, 292, 363, 688
MseI TTAA 4 cut(s) 107, 219, 257, 738
MspCI CTTAAG 1 cut(s) 106
MspI CCGG 2 cut(s) 23, 32
MspR9I CCNGG 2 cut(s) 24, 32
Mva1269I GAATGC 1 cut(s) 389
MwoI GCNNNNNNNGC 3 cut(s) 13, 72, 209
NciI CCSGG 2 cut(s) 24, 32
NcoI CCATGG 1 cut(s) 57
NdeII GATC 6 cut(s) 229, 271, 297, 301, 505, 908
NlaIII CATG 5 cut(s) 61, 342, 355, 436, 464
NlaIV GGNNCC 2 cut(s) 212, 910
NspI RCATGY 2 cut(s) 342, 464
NspV TTCGAA 1 cut(s) 782
PceI AGGCCT 1 cut(s) 112
PciI ACATGT 1 cut(s) 460
PctI GAATGC 1 cut(s) 389
PflFI GACNNNGTC 1 cut(s) 50
PkrI GCNGC 7 cut(s) 15, 68, 130, 375, 526, 529, 851
PleI GAGTC 1 cut(s) 580
PpsI GAGTC 1 cut(s) 580
PscI ACATGT 1 cut(s) 460
Psp124BI GAGCTC 1 cut(s) 99
PspN4I GGNNCC 2 cut(s) 212, 910
PspOMI GGGCCC 1 cut(s) 210
PspPI GGNCC 3 cut(s) 85, 210, 211
PstI CTGCAG 1 cut(s) 93
PsuI RGATCY 2 cut(s) 505, 908
PsyI GACNNNGTC 1 cut(s) 50
RsaI GTAC 3 cut(s) 180, 447, 465
RsaNI GTAC 3 cut(s) 179, 446, 464
SacI GAGCTC 1 cut(s) 99
SaqAI TTAA 4 cut(s) 107, 219, 257, 738
SatI GCNGC 7 cut(s) 14, 67, 129, 374, 525, 528, 850
Sau3AI GATC 6 cut(s) 229, 271, 297, 301, 505, 908
Sau96I GGNCC 3 cut(s) 85, 210, 211
SbfI CCTGCAGG 1 cut(s) 93
SchI GAGTC 1 cut(s) 580
ScrFI CCNGG 2 cut(s) 24, 32
SdaI CCTGCAGG 1 cut(s) 93
SduI GDGCHC 2 cut(s) 99, 214
SfaNI GCATC 2 cut(s) 385, 539
SfcI CTRYAG 1 cut(s) 89
SfuI TTCGAA 1 cut(s) 782
SmlI CTYRAG 2 cut(s) 98, 106
SmoI CTYRAG 2 cut(s) 98, 106
Sse8387I CCTGCAGG 1 cut(s) 93
Sse9I AATT 4 cut(s) 427, 621, 693, 724
SseBI AGGCCT 1 cut(s) 112
SsiI CCGC 3 cut(s) 131, 208, 732
SspI AATATT 1 cut(s) 137
SspMI CTAG 2 cut(s) 477, 603
SstI GAGCTC 1 cut(s) 99
StuI AGGCCT 1 cut(s) 112
StyD4I CCNGG 2 cut(s) 22, 30
StyI CCWWGG 3 cut(s) 57, 235, 687
TaaI ACNGT 2 cut(s) 244, 832
TaqI TCGA 5 cut(s) 45, 300, 368, 782, 890
TasI AATT 4 cut(s) 427, 621, 693, 724
TatI WGTACW 1 cut(s) 463
Tru1I TTAA 4 cut(s) 107, 219, 257, 738
Tru9I TTAA 4 cut(s) 107, 219, 257, 738
TscAI CASTG 3 cut(s) 247, 640, 837
TseI GCWGC 7 cut(s) 13, 66, 128, 373, 524, 527, 849
TspDTI ATGAA 4 cut(s) 146, 382, 449, 678
TspGWI ACGGA 1 cut(s) 901
TspRI CASTG 3 cut(s) 247, 640, 837
Tth111I GACNNNGTC 1 cut(s) 50
Vha464I CTTAAG 1 cut(s) 106
XapI RAATTY 2 cut(s) 427, 621
XceI RCATGY 2 cut(s) 342, 464
XspI CTAG 2 cut(s) 477, 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.