FvH4_7g18310

Protein of unknown function (DUF455)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011094
Physical Location & Seq
Reverse (-)
15308415 .. 15309815
1401 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18310.t4

Sequence Viewer

Length: 558 bp
ATGCCGGTAGAGTTCTTCACTGATTTCGTCAAGGTGGCGCAGGACGAAGGGAGCCACTTCACTCTGCTGGCGGCGAGGCTGGAGGAGATGGGATCGTTTTATGGGGCTTTGCCGGTTCATGACGGGCTGTGGGACTCGGCAGCTGCTACTTCGGATGATCTGCTGGCGCGGCTGGCGGTGGAGCATTGTGTCCACGAGGCGAGGGGGTTGGATGTTTTGCCCACGACCATTGCGAGGTTTCGCAATGGTGGTGATGAGGAGACGGCAGGATTGCTGGAGAGGGTGGTGTATCCGGAAGAGGTCACGCATTGCGCTGCGGGGGTGAAGTGGTTTAAGTATGTTTTCCTGAGGTCGATGGGAAAGGGGTTGGATGGAGATGAGGAAGAGGGAGTGGTTGGAAAGTTTCATGAAGTTGTGAGGAAGCATTTTAGGGGGCCTTTGAAGCCTCCTTTCAATGAAGAAGCGAGGAAAGCTGCAGGATTTGGTCCGAAATGGTATGAACCTCTTGCTGTCAAAGAGAGCAAGGTTACTACTGCAACTAGTACTACAGCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF455

Protein Analysis

186

Amino Acids

20.4

Weight (kDa)

5.38

Isoelectric Point (pI)

31.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF455 PF04305 1 - 210 5.5e-79 Protein of unknown function (DUF455)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04520
fragaria_vesca FvH4_7g18310 FvH4_7g18310 FvH4_7g18310 FvH4_7g18310
malus_domestica MD01G1099600.v1.1
prunus_persica Prupe.2G205100_v2.0.a1
pyrus_communis pycom01g12670
rosa_chinensis RchiOBHm_Chr1g0362011
rosa_laevigata RLG00000027680
rosa_multiflora Rmu_co8465241.1_g000001 Rmu_sc0010614.1_g000009
rosa_roxburghii Rroxscaffold_4G00294590
rosa_rugosa Rorug01G0292500 Rorug01G0292600
rosa_samantha Rh1AG303000 Rh1BG266200 Rh1CG284400 Rh1DG296200
rosa_wichuraiana Rw1G026980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 169
AccIII TCCGGA 1 cut(s) 292
AciI CCGC 4 cut(s) 71, 169, 176, 317
AclWI GGATC 1 cut(s) 100
AfaI GTAC 1 cut(s) 544
AfiI CCNNNNNNNGG 1 cut(s) 234
AgsI TTSAA 2 cut(s) 442, 454
AhlI ACTAGT 1 cut(s) 539
AluBI AGCT 2 cut(s) 143, 473
AluI AGCT 2 cut(s) 143, 473
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 1 cut(s) 100
Aor13HI TCCGGA 1 cut(s) 292
AoxI GGCC 1 cut(s) 434
ApeKI GCWGC 4 cut(s) 140, 143, 314, 473
AspLEI GCGC 3 cut(s) 40, 169, 314
AspS9I GGNCC 2 cut(s) 434, 485
AsuHPI GGTGA 2 cut(s) 263, 334
AvaII GGWCC 1 cut(s) 485
AxyI CCTNAGG 1 cut(s) 347
BauI CACGAG 1 cut(s) 194
BbvI GCAGC 4 cut(s) 130, 152, 301, 460
BccI CCATC 3 cut(s) 82, 349, 365
BceAI ACGGC 1 cut(s) 279
BciVI GTATCC 1 cut(s) 300
BcoDI GTCTC 1 cut(s) 254
BcuI ACTAGT 1 cut(s) 539
BfaI CTAG 1 cut(s) 540
BfmI CTRYAG 2 cut(s) 474, 546
BfuI GTATCC 1 cut(s) 300
BisI GCNGC 6 cut(s) 72, 141, 144, 170, 315, 474
BlsI GCNGC 6 cut(s) 73, 142, 145, 171, 316, 475
BmcAI AGTACT 1 cut(s) 544
Bme18I GGWCC 1 cut(s) 485
BmgT120I GGNCC 2 cut(s) 434, 485
BmiI GGNNCC 2 cut(s) 53, 435
BpmI CTGGAG 2 cut(s) 101, 296
BsaWI WCCGGW 1 cut(s) 292
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse118I RCCGGY 2 cut(s) 4, 112
Bse21I CCTNAGG 1 cut(s) 347
Bse3DI GCAATG 3 cut(s) 228, 250, 307
BseAI TCCGGA 1 cut(s) 292
BseGI GGATG 3 cut(s) 160, 217, 376
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMI GCAATG 3 cut(s) 228, 250, 307
BseMII CTCAG 1 cut(s) 338
BseRI GAGGAG 2 cut(s) 98, 272
BseXI GCAGC 4 cut(s) 130, 152, 301, 460
Bsh1236I CGCG 1 cut(s) 169
BshFI GGCC 1 cut(s) 436
BsiSI CCGG 3 cut(s) 5, 113, 293
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 234
BsmAI GTCTC 1 cut(s) 254
BsmBI CGTCTC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 1 cut(s) 436
Bsp13I TCCGGA 1 cut(s) 292
Bsp143I GATC 2 cut(s) 92, 157
BspACI CCGC 4 cut(s) 71, 169, 176, 317
BspANI GGCC 1 cut(s) 436
BspCNI CTCAG 1 cut(s) 339
BspEI TCCGGA 1 cut(s) 292
BspFNI CGCG 1 cut(s) 169
BspHI TCATGA 2 cut(s) 118, 406
BspLI GGNNCC 2 cut(s) 53, 435
BspMAI CTGCAG 1 cut(s) 478
BspPI GGATC 1 cut(s) 100
BsrDI GCAATG 3 cut(s) 228, 250, 307
BsrFI RCCGGY 2 cut(s) 4, 112
BssAI RCCGGY 2 cut(s) 4, 112
BssMI GATC 2 cut(s) 92, 157
BssSI CACGAG 1 cut(s) 194
Bst2BI CACGAG 1 cut(s) 194
Bst6I CTCTTC 2 cut(s) 291, 378
BstC8I GCNNGC 3 cut(s) 69, 165, 174
BstDEI CTNAG 1 cut(s) 347
BstF5I GGATG 3 cut(s) 160, 217, 376
BstFNI CGCG 1 cut(s) 169
BstHHI GCGC 3 cut(s) 40, 169, 314
BstKTI GATC 2 cut(s) 95, 160
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 2 cut(s) 92, 157
BstMWI GCNNNNNNNGC 4 cut(s) 169, 173, 442, 470
BstSFI CTRYAG 2 cut(s) 474, 546
BstUI CGCG 1 cut(s) 169
BstV1I GCAGC 4 cut(s) 130, 152, 301, 460
Bsu36I CCTNAGG 1 cut(s) 347
BsuI GTATCC 1 cut(s) 300
BsuRI GGCC 1 cut(s) 436
BtsCI GGATG 3 cut(s) 160, 217, 376
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 3 cut(s) 69, 165, 174
CciI TCATGA 2 cut(s) 118, 406
CfoI GCGC 3 cut(s) 40, 169, 314
Cfr10I RCCGGY 2 cut(s) 4, 112
Cfr13I GGNCC 2 cut(s) 434, 485
Csp6I GTAC 1 cut(s) 543
CspCI CAANNNNNGTGG 2 cut(s) 211, 246
CviAII CATG 2 cut(s) 119, 407
CviJI RGCY 9 cut(s) 54, 79, 107, 127, 143, 172, 436, 445, 473
CviKI_1 RGCY 9 cut(s) 54, 79, 107, 127, 143, 172, 436, 445, 473
CviQI GTAC 1 cut(s) 543
DdeI CTNAG 1 cut(s) 347
DpnI GATC 2 cut(s) 94, 159
DpnII GATC 2 cut(s) 92, 157
Eam1104I CTCTTC 2 cut(s) 291, 378
EarI CTCTTC 2 cut(s) 291, 378
Eco47I GGWCC 1 cut(s) 485
Eco81I CCTNAGG 1 cut(s) 347
EcoO109I RGGNCCY 1 cut(s) 434
Esp3I CGTCTC 1 cut(s) 254
FaeI CATG 2 cut(s) 122, 410
FaiI YATR 5 cut(s) 102, 120, 339, 408, 498
FaqI GGGAC 1 cut(s) 146
FatI CATG 2 cut(s) 118, 406
FauI CCCGC 1 cut(s) 310
Fnu4HI GCNGC 6 cut(s) 72, 141, 144, 170, 315, 474
FokI GGATG 3 cut(s) 167, 224, 383
Fsp4HI GCNGC 6 cut(s) 72, 141, 144, 170, 315, 474
FspBI CTAG 1 cut(s) 540
GlaI GCGC 3 cut(s) 39, 168, 313
GluI GCNGC 6 cut(s) 72, 141, 144, 170, 315, 474
GsuI CTGGAG 2 cut(s) 101, 296
HaeIII GGCC 1 cut(s) 436
HapII CCGG 3 cut(s) 5, 113, 293
HhaI GCGC 3 cut(s) 40, 169, 314
Hin1II CATG 2 cut(s) 122, 410
Hin6I GCGC 3 cut(s) 38, 167, 312
HinP1I GCGC 3 cut(s) 38, 167, 312
HinfI GANTC 1 cut(s) 134
HpaII CCGG 3 cut(s) 5, 113, 293
HphI GGTGA 2 cut(s) 263, 334
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 2 cut(s) 154, 489
Hpy188III TCNNGA 4 cut(s) 119, 293, 346, 407
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 41
HpyCH4V TGCA 2 cut(s) 476, 536
HpyF10VI GCNNNNNNNGC 4 cut(s) 169, 173, 442, 470
HpyF3I CTNAG 1 cut(s) 347
Hsp92II CATG 2 cut(s) 122, 410
HspAI GCGC 3 cut(s) 38, 167, 312
Kpn2I TCCGGA 1 cut(s) 292
Kzo9I GATC 2 cut(s) 92, 157
LmnI GCTCC 2 cut(s) 51, 181
Lsp1109I GCAGC 4 cut(s) 130, 152, 301, 460
MaeI CTAG 1 cut(s) 540
MaeIII GTNAC 2 cut(s) 301, 526
MalI GATC 2 cut(s) 94, 159
MboI GATC 2 cut(s) 92, 157
MboII GAAGA 4 cut(s) 7, 308, 395, 470
MluCI AATT 1 cut(s) 552
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 3 cut(s) 189, 348, 376
MroI TCCGGA 1 cut(s) 292
MseI TTAA 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 143
MspI CCGG 3 cut(s) 5, 113, 293
MvnI CGCG 1 cut(s) 169
MwoI GCNNNNNNNGC 4 cut(s) 169, 173, 442, 470
NdeII GATC 2 cut(s) 92, 157
NlaIII CATG 2 cut(s) 122, 410
NlaIV GGNNCC 2 cut(s) 53, 435
NmeAIII GCCGAG 1 cut(s) 116
NmuCI GTSAC 1 cut(s) 301
PagI TCATGA 2 cut(s) 118, 406
PcsI WCGNNNNNNNCGW 1 cut(s) 230
PkrI GCNGC 6 cut(s) 73, 142, 145, 171, 316, 475
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PspN4I GGNNCC 2 cut(s) 53, 435
PspPI GGNCC 2 cut(s) 434, 485
PstI CTGCAG 1 cut(s) 478
PvuII CAGCTG 1 cut(s) 143
RsaI GTAC 1 cut(s) 544
RsaNI GTAC 1 cut(s) 543
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 6 cut(s) 72, 141, 144, 170, 315, 474
Sau3AI GATC 2 cut(s) 92, 157
Sau96I GGNCC 2 cut(s) 434, 485
ScaI AGTACT 1 cut(s) 544
SchI GAGTC 1 cut(s) 128
SetI ASST 8 cut(s) 36, 145, 239, 303, 353, 475, 505, 528
SfcI CTRYAG 2 cut(s) 474, 546
SinI GGWCC 1 cut(s) 485
SpeI ACTAGT 1 cut(s) 539
Sse9I AATT 1 cut(s) 552
SsiI CCGC 4 cut(s) 71, 169, 176, 317
SspMI CTAG 1 cut(s) 540
TaqI TCGA 1 cut(s) 353
TasI AATT 1 cut(s) 552
TatI WGTACW 1 cut(s) 542
TauI GCSGC 2 cut(s) 74, 172
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 4 cut(s) 140, 143, 314, 473
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 5 cut(s) 107, 395, 423, 471, 513
TspRI CASTG 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 485
XspI CTAG 1 cut(s) 540
ZrmI AGTACT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.