pycom01g12670

Protein of unknown function (DUF455)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0011094
Physical Location & Seq
Forward (+)
13333758 .. 13335912
2155 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g12670.1

Sequence Viewer

Length: 897 bp
ATGAGCGGAACCGAGAGCTTAGCGGAAGCGGCGATAAGGGTATTGAACACAGCGGACCCGTTCGAGAAGGCCCTAGTCGGTGACTCGGTGGCGGCTCAGTGGCTGGGAGGGACCATCACTCGTGCGTACGATTCGTCCCTGGACCTCTCCGTGCCTGATCGACCCTCCAGGCTCAGCAATGTTAAGTTGGTGGCGCCGAGTTCGATGCCGAAGATTGGGAAAGGCGGGAGCTTACGGAGTAGGCAGGCCATAGTTCATAGCCTCACGCACACTGAGAGTTGGGCTATCGACTTGTCTTGGGACATAATTGCTAGGTTCGGGAAGCAAGAGGCAATGCCGAGAGAGTTCTTCACGGATTTCGTGAAGGTGGCGCAGGACGAAGGTCGTCACTTCACTCTGCTGGCATCTCGCCTGGAGGAGATGGGTTCCTTCTATGGAGCTTTTCCAGCCCATGACGGCCTCTGGGACTCGGCAACTGCCACTTCCAAAGACCTAATGGCGCGCCTTGCAATCGAGCATTGCGTCCACGAGGCAAGAGGACTCGACGTGCTCCCAACAACCATCTCTCGATTCCGCAGCGGAGGGGATGACAAAACGGCTGAGTTGCTGGAGAGCGTGGTGTACCCGGAAGAAATAACTCATTGTGCTGCTGGTGTTAAGTGGTTCAAGTATCTCTGCTTGAGGGTGGGGGATAGCGCTTCGGATCAACGGAGCCTGACGAACTTGGAGGCTGATGAAGAAGCTGAAGTGATTAAAAAGTTTCATGGAACTGTGAGAAGGCATTTTAGGGGGGTTTTGAAACCTCCTTTCAATGAAAAGGCGAGGGAAATTGCTGGGTTTGGGTCTCAGTGGTATGAGCCTCTTACTGTCAAAGAGCAGGATACGCAGCATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF455

Protein Analysis

299

Amino Acids

32.98

Weight (kDa)

5.83

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF455 PF04305 16 - 286 9.5e-87 Protein of unknown function (DUF455)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04520
fragaria_vesca FvH4_7g18310 FvH4_7g18310 FvH4_7g18310 FvH4_7g18310
malus_domestica MD01G1099600.v1.1
prunus_persica Prupe.2G205100_v2.0.a1
pyrus_communis pycom01g12670
rosa_chinensis RchiOBHm_Chr1g0362011
rosa_laevigata RLG00000027680
rosa_multiflora Rmu_co8465241.1_g000001 Rmu_sc0010614.1_g000009
rosa_roxburghii Rroxscaffold_4G00294590
rosa_rugosa Rorug01G0292500 Rorug01G0292600
rosa_samantha Rh1AG303000 Rh1BG266200 Rh1CG284400 Rh1DG296200
rosa_wichuraiana Rw1G026980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 193
AccBSI CCGCTC 1 cut(s) 6
AccII CGCG 1 cut(s) 502
AciI CCGC 8 cut(s) 6, 23, 29, 53, 92, 225, 574, 579
AclWI GGATC 1 cut(s) 711
AcuI CTGAAG 1 cut(s) 765
AcyI GRCGYC 1 cut(s) 194
AfaI GTAC 2 cut(s) 128, 623
AfeI AGCGCT 1 cut(s) 697
AfiI CCNNNNNNNGG 1 cut(s) 215
AgsI TTSAA 4 cut(s) 46, 667, 799, 811
AjiI CACGTC 1 cut(s) 547
AjnI CCWGG 3 cut(s) 138, 167, 411
AluBI AGCT 4 cut(s) 18, 231, 440, 743
AluI AGCT 4 cut(s) 18, 231, 440, 743
Alw21I GWGCWC 1 cut(s) 552
Alw26I GTCTC 1 cut(s) 849
AlwI GGATC 1 cut(s) 711
AlwNI CAGNNNCTG 1 cut(s) 103
Aor51HI AGCGCT 1 cut(s) 697
AoxI GGCC 3 cut(s) 69, 246, 457
ApeKI GCWGC 3 cut(s) 576, 647, 886
AscI GGCGCGCC 1 cut(s) 500
AspLEI GCGC 5 cut(s) 196, 373, 502, 504, 698
AspS9I GGNCC 4 cut(s) 55, 70, 111, 142
AsuC2I CCSGG 1 cut(s) 626
AsuHPI GGTGA 1 cut(s) 92
AvaII GGWCC 3 cut(s) 55, 111, 142
BanI GGYRCC 1 cut(s) 193
BauI CACGAG 2 cut(s) 120, 527
Bbv12I GWGCWC 1 cut(s) 552
BbvI GCAGC 2 cut(s) 588, 634
BccI CCATC 3 cut(s) 122, 415, 569
BceAI ACGGC 2 cut(s) 472, 612
BcgI CGANNNNNNTGC 2 cut(s) 187, 221
BciT130I CCWGG 3 cut(s) 140, 169, 413
BciVI GTATCC 1 cut(s) 874
BcnI CCSGG 1 cut(s) 626
BcoDI GTCTC 1 cut(s) 849
BfaI CTAG 2 cut(s) 74, 312
BfoI RGCGCY 2 cut(s) 197, 699
BfuI GTATCC 1 cut(s) 874
BisI GCNGC 5 cut(s) 30, 93, 577, 648, 887
BlpI GCTNAGC 2 cut(s) 19, 173
BlsI GCNGC 5 cut(s) 31, 94, 578, 649, 888
Bme1390I CCNGG 4 cut(s) 140, 169, 413, 626
Bme18I GGWCC 3 cut(s) 55, 111, 142
BmgBI CACGTC 1 cut(s) 547
BmgT120I GGNCC 4 cut(s) 55, 70, 111, 142
BmiI GGNNCC 6 cut(s) 10, 57, 112, 195, 427, 713
BmrFI CCNGG 4 cut(s) 140, 169, 413, 626
BmsI GCATC 2 cut(s) 195, 413
BoxI GACNNNNGTC 1 cut(s) 381
BpmI CTGGAG 3 cut(s) 151, 434, 629
Bpu1102I GCTNAGC 2 cut(s) 19, 173
BpuEI CTTGAG 1 cut(s) 700
BpuMI CCSGG 1 cut(s) 626
BsaHI GRCGYC 1 cut(s) 194
BsaI GGTCTC 1 cut(s) 849
BsaJI CCNNGG 1 cut(s) 138
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse3DI GCAATG 3 cut(s) 184, 339, 517
BseBI CCWGG 3 cut(s) 140, 169, 413
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 592
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMI GCAATG 3 cut(s) 184, 339, 517
BseMII CTCAG 5 cut(s) 110, 187, 264, 591, 860
BsePI GCGCGC 1 cut(s) 500
BseRI GAGGAG 1 cut(s) 431
BseXI GCAGC 2 cut(s) 588, 634
BseYI CCCAGC 2 cut(s) 103, 833
Bsh1236I CGCG 1 cut(s) 502
BshFI GGCC 3 cut(s) 71, 248, 459
BshNI GGYRCC 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 552
BsiSI CCGG 1 cut(s) 626
BsiWI CGTACG 1 cut(s) 126
BslFI GGGAC 4 cut(s) 121, 124, 314, 479
BslI CCNNNNNNNGG 1 cut(s) 215
BsmAI GTCTC 1 cut(s) 849
BsmFI GGGAC 4 cut(s) 121, 124, 314, 479
BsnI GGCC 3 cut(s) 71, 248, 459
Bso31I GGTCTC 1 cut(s) 849
Bsp1286I GDGCHC 1 cut(s) 552
Bsp143I GATC 2 cut(s) 157, 703
Bsp1720I GCTNAGC 2 cut(s) 19, 173
BspACI CCGC 8 cut(s) 6, 23, 29, 53, 92, 225, 574, 579
BspANI GGCC 3 cut(s) 71, 248, 459
BspCNI CTCAG 5 cut(s) 109, 186, 265, 592, 859
BspFNI CGCG 1 cut(s) 502
BspLI GGNNCC 6 cut(s) 10, 57, 112, 195, 427, 713
BspPI GGATC 1 cut(s) 711
BspT107I GGYRCC 1 cut(s) 193
BspTNI GGTCTC 1 cut(s) 849
BsrBI CCGCTC 1 cut(s) 6
BsrDI GCAATG 3 cut(s) 184, 339, 517
BssECI CCNNGG 1 cut(s) 138
BssHII GCGCGC 1 cut(s) 500
BssMI GATC 2 cut(s) 157, 703
BssNI GRCGYC 1 cut(s) 194
BssSI CACGAG 2 cut(s) 120, 527
Bst2BI CACGAG 2 cut(s) 120, 527
Bst2UI CCWGG 3 cut(s) 140, 169, 413
Bst4CI ACNGT 2 cut(s) 772, 868
BstACI GRCGYC 1 cut(s) 194
BstC8I GCNNGC 4 cut(s) 246, 402, 502, 891
BstDEI CTNAG 6 cut(s) 19, 96, 173, 273, 600, 846
BstF5I GGATG 1 cut(s) 592
BstFNI CGCG 1 cut(s) 502
BstH2I RGCGCY 2 cut(s) 197, 699
BstHHI GCGC 5 cut(s) 196, 373, 502, 504, 698
BstKTI GATC 2 cut(s) 160, 706
BstMAI GTCTC 1 cut(s) 849
BstMBI GATC 2 cut(s) 157, 703
BstMWI GCNNNNNNNGC 4 cut(s) 29, 446, 506, 883
BstNI CCWGG 3 cut(s) 140, 169, 413
BstNSI RCATGY 1 cut(s) 893
BstPAI GACNNNNGTC 1 cut(s) 381
BstSCI CCNGG 4 cut(s) 138, 167, 411, 624
BstUI CGCG 1 cut(s) 502
BstV1I GCAGC 2 cut(s) 588, 634
BsuI GTATCC 1 cut(s) 874
BsuRI GGCC 3 cut(s) 71, 248, 459
BtrI CACGTC 1 cut(s) 547
BtsCI GGATG 1 cut(s) 592
BtsIMutI CAGTG 3 cut(s) 104, 270, 854
Cac8I GCNNGC 4 cut(s) 246, 402, 502, 891
CaiI CAGNNNCTG 1 cut(s) 103
CfoI GCGC 5 cut(s) 196, 373, 502, 504, 698
Cfr13I GGNCC 4 cut(s) 55, 70, 111, 142
CseI GACGC 1 cut(s) 511
Csp6I GTAC 2 cut(s) 127, 622
CviAII CATG 4 cut(s) 452, 764, 890, 894
CviQI GTAC 2 cut(s) 127, 622
DdeI CTNAG 6 cut(s) 19, 96, 173, 273, 600, 846
DinI GGCGCC 1 cut(s) 195
DpnI GATC 2 cut(s) 159, 705
DpnII GATC 2 cut(s) 157, 703
Eco31I GGTCTC 1 cut(s) 849
Eco47I GGWCC 3 cut(s) 55, 111, 142
Eco47III AGCGCT 1 cut(s) 697
Eco57I CTGAAG 1 cut(s) 765
EcoO109I RGGNCCY 1 cut(s) 70
EcoRII CCWGG 3 cut(s) 138, 167, 411
EcoT22I ATGCAT 1 cut(s) 895
EgeI GGCGCC 1 cut(s) 195
EheI GGCGCC 1 cut(s) 195
FaeI CATG 4 cut(s) 455, 767, 893, 897
FaiI YATR 9 cut(s) 251, 258, 305, 435, 453, 765, 855, 891, 895
FaqI GGGAC 4 cut(s) 121, 124, 314, 479
FatI CATG 4 cut(s) 451, 763, 889, 893
FauI CCCGC 1 cut(s) 218
Fnu4HI GCNGC 5 cut(s) 30, 93, 577, 648, 887
FokI GGATG 1 cut(s) 599
Fsp4HI GCNGC 5 cut(s) 30, 93, 577, 648, 887
FspBI CTAG 2 cut(s) 74, 312
GlaI GCGC 5 cut(s) 195, 372, 501, 503, 697
GluI GCNGC 5 cut(s) 30, 93, 577, 648, 887
GsaI CCCAGC 2 cut(s) 107, 837
GsuI CTGGAG 3 cut(s) 151, 434, 629
HaeII RGCGCY 2 cut(s) 197, 699
HaeIII GGCC 3 cut(s) 71, 248, 459
HapII CCGG 1 cut(s) 626
HgaI GACGC 1 cut(s) 511
HhaI GCGC 5 cut(s) 196, 373, 502, 504, 698
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 4 cut(s) 455, 767, 893, 897
Hin6I GCGC 5 cut(s) 194, 371, 500, 502, 696
HinP1I GCGC 5 cut(s) 194, 371, 500, 502, 696
HinfI GANTC 5 cut(s) 83, 131, 467, 540, 570
HpaII CCGG 1 cut(s) 626
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 2 cut(s) 526, 622
Hpy188I TCNGA 1 cut(s) 703
Hpy188III TCNNGA 4 cut(s) 64, 319, 361, 567
Hpy8I GTNNAC 2 cut(s) 526, 622
Hpy99I CGWCG 1 cut(s) 548
HpyAV CCTTC 5 cut(s) 61, 358, 374, 439, 771
HpyCH4III ACNGT 2 cut(s) 772, 868
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 2 cut(s) 509, 893
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 446, 506, 883
HpyF3I CTNAG 6 cut(s) 19, 96, 173, 273, 600, 846
HpySE526I ACGT 1 cut(s) 546
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 4 cut(s) 455, 767, 893, 897
HspAI GCGC 5 cut(s) 194, 371, 500, 502, 696
KasI GGCGCC 1 cut(s) 193
Kzo9I GATC 2 cut(s) 157, 703
LmnI GCTCC 4 cut(s) 228, 437, 555, 711
Lsp1109I GCAGC 2 cut(s) 588, 634
LweI GCATC 2 cut(s) 195, 413
MaeI CTAG 2 cut(s) 74, 312
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 2 cut(s) 80, 386
MalI GATC 2 cut(s) 159, 705
MbiI CCGCTC 1 cut(s) 6
MboI GATC 2 cut(s) 157, 703
MboII GAAGA 4 cut(s) 223, 340, 641, 749
MhlI GDGCHC 1 cut(s) 552
MluCI AATT 2 cut(s) 306, 828
Mly113I GGCGCC 1 cut(s) 194
MlyI GAGTC 3 cut(s) 77, 461, 534
Mph1103I ATGCAT 1 cut(s) 895
MseI TTAA 3 cut(s) 183, 657, 753
MspA1I CMGCKG 2 cut(s) 53, 579
MspI CCGG 1 cut(s) 626
MspR9I CCNGG 4 cut(s) 140, 169, 413, 626
MvaI CCWGG 3 cut(s) 140, 169, 413
MvnI CGCG 1 cut(s) 502
MwoI GCNNNNNNNGC 4 cut(s) 29, 446, 506, 883
NarI GGCGCC 1 cut(s) 194
NciI CCSGG 1 cut(s) 626
NdeII GATC 2 cut(s) 157, 703
NlaIII CATG 4 cut(s) 455, 767, 893, 897
NlaIV GGNNCC 6 cut(s) 10, 57, 112, 195, 427, 713
NmeAIII GCCGAG 3 cut(s) 222, 363, 449
NmuCI GTSAC 2 cut(s) 80, 386
NsiI ATGCAT 1 cut(s) 895
NspI RCATGY 1 cut(s) 893
PaeI GCATGC 1 cut(s) 893
PalAI GGCGCGCC 1 cut(s) 500
PauI GCGCGC 1 cut(s) 500
PcsI WCGNNNNNNNCGW 1 cut(s) 519
PfeI GAWTC 2 cut(s) 131, 570
Pfl23II CGTACG 1 cut(s) 126
PkrI GCNGC 5 cut(s) 31, 94, 578, 649, 888
PleI GAGTC 3 cut(s) 77, 461, 534
PluTI GGCGCC 1 cut(s) 197
PpsI GAGTC 3 cut(s) 77, 461, 534
PshAI GACNNNNGTC 1 cut(s) 381
Psp6I CCWGG 3 cut(s) 138, 167, 411
PspFI CCCAGC 2 cut(s) 103, 833
PspGI CCWGG 3 cut(s) 138, 167, 411
PspLI CGTACG 1 cut(s) 126
PspN4I GGNNCC 6 cut(s) 10, 57, 112, 195, 427, 713
PspPI GGNCC 4 cut(s) 55, 70, 111, 142
PstNI CAGNNNCTG 1 cut(s) 103
PteI GCGCGC 1 cut(s) 500
RsaI GTAC 2 cut(s) 128, 623
RsaNI GTAC 2 cut(s) 127, 622
SaqAI TTAA 3 cut(s) 183, 657, 753
SatI GCNGC 5 cut(s) 30, 93, 577, 648, 887
Sau3AI GATC 2 cut(s) 157, 703
Sau96I GGNCC 4 cut(s) 55, 70, 111, 142
SchI GAGTC 3 cut(s) 77, 461, 534
ScrFI CCNGG 4 cut(s) 140, 169, 413, 626
SduI GDGCHC 1 cut(s) 552
SfaNI GCATC 2 cut(s) 195, 413
SfoI GGCGCC 1 cut(s) 195
SgsI GGCGCGCC 1 cut(s) 500
SinI GGWCC 3 cut(s) 55, 111, 142
SmlI CTYRAG 1 cut(s) 679
SmoI CTYRAG 1 cut(s) 679
SphI GCATGC 1 cut(s) 893
Sse9I AATT 2 cut(s) 306, 828
SsiI CCGC 8 cut(s) 6, 23, 29, 53, 92, 225, 574, 579
SspDI GGCGCC 1 cut(s) 193
SspMI CTAG 2 cut(s) 74, 312
StyD4I CCNGG 4 cut(s) 138, 167, 411, 624
TaaI ACNGT 2 cut(s) 772, 868
TaiI ACGT 1 cut(s) 549
TaqI TCGA 7 cut(s) 63, 160, 203, 288, 513, 543, 568
TasI AATT 2 cut(s) 306, 828
TauI GCSGC 2 cut(s) 32, 95
TfiI GAWTC 2 cut(s) 131, 570
Tru1I TTAA 3 cut(s) 183, 657, 753
Tru9I TTAA 3 cut(s) 183, 657, 753
TscAI CASTG 3 cut(s) 104, 277, 854
TseFI GTSAC 2 cut(s) 80, 386
TseI GCWGC 3 cut(s) 576, 647, 886
Tsp45I GTSAC 2 cut(s) 80, 386
TspDTI ATGAA 4 cut(s) 245, 750, 752, 828
TspGWI ACGGA 4 cut(s) 139, 250, 368, 724
TspRI CASTG 3 cut(s) 104, 277, 854
VpaK11BI GGWCC 3 cut(s) 55, 111, 142
XceI RCATGY 1 cut(s) 893
XcmI CCANNNNNNNNNTGG 1 cut(s) 493
XspI CTAG 2 cut(s) 74, 312
Zsp2I ATGCAT 1 cut(s) 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.