Rw1G026980

Protein of unknown function (DUF455)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0011094
Physical Location & Seq
Reverse (-)
54325796 .. 54326811
1016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G026980.1

Sequence Viewer

Length: 780 bp
ATGGAGACCTTAGTTGACGCGGCGCTCCGAGTTTTAAACACCGCCGACCCCTTCGACAAGGCCCGACTCGGCGACTCGGTGAAGCTGGTGACGCCGGGTCAGATGCCGAAGCTGGGCCGAGGCGGTAGCTTGCAGAGCAGGCAAGCAATGGTTCATAGCTTGGCGCACACGGAGAGTTGGGCGATTGACTTGTCTTGGGACATAATTGCGAGGTTTGGTAAGCAAGAGGCAATGCCGGTGGAGTTTTTCACTGATTTTGTGAAGGTGGCTCAGGACGAAGGGAGACATTTCAGTCTCTTGGCTTCGAGGCTGGAAGAGATGGGATCGTTTTATGGGGCTTTGCCGGCGCATGACGGGTTATGGGACTCGGCGACTGCTACTTCGGATGACTTGCTGGCGCGGTTGGCGGTGGAGCATTGTGTCCATGAGGCGAGAGGAATGGATGTGCTGCCCACGACCATTGCGAGGTTTCGCAATGGGGGTGATGAGAAGACGGCTGGGCTGCTGGAGAGCGTGGTGTACCCTGAAGAAATCACGCATTGTGCTGCGGGAGTGAAATGGTTTAAGTATGTTTTCCTGAGGTCGATGGGAAAAGGTTTGGATGGAAATGAGGAAGATGCAGTGATTGAGAAGTTCCATGAAGTTGTGAGGAAGCATTTTAGGGGGCCTTTGAAGCCTCCTTTCAACGAAGAAGCGAGGAAAGCTGCTGGATTTGGTCCTCAATGGTATGAACCTCTTGCTGTCAAAGAGCAAGACTACTACTACTACTATAGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF455

Protein Analysis

259

Amino Acids

29.0

Weight (kDa)

5.5

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF455 PF04305 17 - 244 2.9e-83 Protein of unknown function (DUF455)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04520
fragaria_vesca FvH4_7g18310 FvH4_7g18310 FvH4_7g18310 FvH4_7g18310
malus_domestica MD01G1099600.v1.1
prunus_persica Prupe.2G205100_v2.0.a1
pyrus_communis pycom01g12670
rosa_chinensis RchiOBHm_Chr1g0362011
rosa_laevigata RLG00000027680
rosa_multiflora Rmu_co8465241.1_g000001 Rmu_sc0010614.1_g000009
rosa_roxburghii Rroxscaffold_4G00294590
rosa_rugosa Rorug01G0292500 Rorug01G0292600
rosa_samantha Rh1AG303000 Rh1BG266200 Rh1CG284400 Rh1DG296200
rosa_wichuraiana Rw1G026980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 291
AccII CGCG 2 cut(s) 20, 400
AciI CCGC 6 cut(s) 20, 42, 123, 400, 407, 548
AclWI GGATC 1 cut(s) 331
AcuI CTGAAG 1 cut(s) 546
AcyI GRCGYC 1 cut(s) 92
AfaI GTAC 1 cut(s) 521
AfiI CCNNNNNNNGG 2 cut(s) 113, 465
AgsI TTSAA 2 cut(s) 673, 685
AhdI GACNNNNNGTC 1 cut(s) 96
AluBI AGCT 5 cut(s) 85, 112, 129, 159, 704
AluI AGCT 5 cut(s) 85, 112, 129, 159, 704
Alw26I GTCTC 2 cut(s) 277, 299
AlwI GGATC 1 cut(s) 331
AoxI GGCC 3 cut(s) 60, 115, 665
ApeKI GCWGC 4 cut(s) 448, 502, 545, 704
ArsI GACNNNNNNTTYG 2 cut(s) 364, 396
AspLEI GCGC 4 cut(s) 25, 166, 349, 400
AspS9I GGNCC 4 cut(s) 61, 115, 665, 716
AsuC2I CCSGG 1 cut(s) 96
AsuHPI GGTGA 3 cut(s) 91, 100, 494
AvaII GGWCC 1 cut(s) 716
AxyI CCTNAGG 1 cut(s) 578
BbsI GAAGAC 1 cut(s) 497
BbvI GCAGC 4 cut(s) 435, 489, 532, 691
BccI CCATC 3 cut(s) 313, 580, 596
BceAI ACGGC 1 cut(s) 510
BcnI CCSGG 1 cut(s) 96
BcoDI GTCTC 2 cut(s) 277, 299
BfmI CTRYAG 1 cut(s) 769
BfoI RGCGCY 1 cut(s) 26
BisI GCNGC 5 cut(s) 21, 449, 503, 546, 705
BlsI GCNGC 5 cut(s) 22, 450, 504, 547, 706
Bme1390I CCNGG 1 cut(s) 96
Bme18I GGWCC 1 cut(s) 716
BmeRI GACNNNNNGTC 1 cut(s) 96
BmgT120I GGNCC 4 cut(s) 61, 115, 665, 716
BmiI GGNNCC 1 cut(s) 666
BmrFI CCNGG 1 cut(s) 96
BmsI GCATC 2 cut(s) 93, 607
BpiI GAAGAC 1 cut(s) 497
BpmI CTGGAG 1 cut(s) 527
Bpu10I CCTNAGC 1 cut(s) 270
BpuMI CCSGG 1 cut(s) 96
BsaHI GRCGYC 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 118
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 465
Bse118I RCCGGY 2 cut(s) 235, 343
Bse21I CCTNAGG 1 cut(s) 578
Bse3DI GCAATG 4 cut(s) 153, 237, 459, 481
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 3 cut(s) 391, 448, 607
BseLI CCNNNNNNNGG 2 cut(s) 113, 465
BseMI GCAATG 4 cut(s) 153, 237, 459, 481
BseMII CTCAG 2 cut(s) 284, 569
BseXI GCAGC 4 cut(s) 435, 489, 532, 691
BseYI CCCAGC 2 cut(s) 112, 497
Bsh1236I CGCG 2 cut(s) 20, 400
BshFI GGCC 3 cut(s) 62, 117, 667
BsiSI CCGG 3 cut(s) 95, 236, 344
BslFI GGGAC 2 cut(s) 212, 377
BslI CCNNNNNNNGG 2 cut(s) 113, 465
BsmAI GTCTC 2 cut(s) 277, 299
BsmFI GGGAC 2 cut(s) 212, 377
BsnI GGCC 3 cut(s) 62, 117, 667
Bsp143I GATC 1 cut(s) 323
BspACI CCGC 6 cut(s) 20, 42, 123, 400, 407, 548
BspANI GGCC 3 cut(s) 62, 117, 667
BspCNI CTCAG 2 cut(s) 283, 570
BspFNI CGCG 2 cut(s) 20, 400
BspLI GGNNCC 1 cut(s) 666
BspPI GGATC 1 cut(s) 331
BsrDI GCAATG 4 cut(s) 153, 237, 459, 481
BsrFI RCCGGY 2 cut(s) 235, 343
BssAI RCCGGY 2 cut(s) 235, 343
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 1 cut(s) 323
BssNI GRCGYC 1 cut(s) 92
Bst6I CTCTTC 1 cut(s) 309
BstACI GRCGYC 1 cut(s) 92
BstC8I GCNNGC 5 cut(s) 131, 140, 144, 345, 396
BstDEI CTNAG 3 cut(s) 10, 270, 578
BstF5I GGATG 3 cut(s) 391, 448, 607
BstFNI CGCG 2 cut(s) 20, 400
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 4 cut(s) 25, 166, 349, 400
BstKTI GATC 1 cut(s) 326
BstMAI GTCTC 2 cut(s) 277, 299
BstMBI GATC 1 cut(s) 323
BstMWI GCNNNNNNNGC 7 cut(s) 91, 135, 139, 344, 404, 673, 701
BstSCI CCNGG 1 cut(s) 94
BstSFI CTRYAG 1 cut(s) 769
BstUI CGCG 2 cut(s) 20, 400
BstV1I GCAGC 4 cut(s) 435, 489, 532, 691
BstV2I GAAGAC 1 cut(s) 497
Bsu36I CCTNAGG 1 cut(s) 578
BsuRI GGCC 3 cut(s) 62, 117, 667
BtsCI GGATG 3 cut(s) 391, 448, 607
BtsI GCAGTG 1 cut(s) 627
BtsIMutI CAGTG 2 cut(s) 249, 627
Cac8I GCNNGC 5 cut(s) 131, 140, 144, 345, 396
CfoI GCGC 4 cut(s) 25, 166, 349, 400
Cfr10I RCCGGY 2 cut(s) 235, 343
Cfr13I GGNCC 4 cut(s) 61, 115, 665, 716
CseI GACGC 2 cut(s) 26, 100
Csp6I GTAC 1 cut(s) 520
CspCI CAANNNNNGTGG 4 cut(s) 219, 254, 442, 477
CviAII CATG 3 cut(s) 350, 425, 638
CviQI GTAC 1 cut(s) 520
DdeI CTNAG 3 cut(s) 10, 270, 578
DpnI GATC 1 cut(s) 325
DpnII GATC 1 cut(s) 323
DraI TTTAAA 1 cut(s) 36
DrdI GACNNNNNNGTC 1 cut(s) 291
DriI GACNNNNNGTC 1 cut(s) 96
DseDI GACNNNNNNGTC 1 cut(s) 291
Eam1104I CTCTTC 1 cut(s) 309
Eam1105I GACNNNNNGTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 716
Eco57I CTGAAG 1 cut(s) 546
Eco81I CCTNAGG 1 cut(s) 578
EcoO109I RGGNCCY 1 cut(s) 665
FaeI CATG 3 cut(s) 353, 428, 641
FaqI GGGAC 2 cut(s) 212, 377
FatI CATG 3 cut(s) 349, 424, 637
FauI CCCGC 1 cut(s) 541
Fnu4HI GCNGC 5 cut(s) 21, 449, 503, 546, 705
FokI GGATG 3 cut(s) 398, 455, 614
Fsp4HI GCNGC 5 cut(s) 21, 449, 503, 546, 705
GlaI GCGC 4 cut(s) 24, 165, 348, 399
GluI GCNGC 5 cut(s) 21, 449, 503, 546, 705
GsaI CCCAGC 2 cut(s) 116, 501
GsuI CTGGAG 1 cut(s) 527
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 3 cut(s) 62, 117, 667
HapII CCGG 3 cut(s) 95, 236, 344
HgaI GACGC 2 cut(s) 26, 100
HhaI GCGC 4 cut(s) 25, 166, 349, 400
Hin1I GRCGYC 1 cut(s) 92
Hin1II CATG 3 cut(s) 353, 428, 641
Hin6I GCGC 4 cut(s) 23, 164, 347, 398
HinP1I GCGC 4 cut(s) 23, 164, 347, 398
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 3 cut(s) 66, 74, 365
HpaII CCGG 3 cut(s) 95, 236, 344
HphI GGTGA 3 cut(s) 91, 100, 494
Hpy166II GTNNAC 2 cut(s) 16, 520
Hpy188I TCNGA 3 cut(s) 29, 102, 385
Hpy188III TCNNGA 2 cut(s) 272, 577
Hpy8I GTNNAC 2 cut(s) 16, 520
HpyAV CCTTC 3 cut(s) 61, 256, 272
HpyCH4V TGCA 2 cut(s) 133, 620
HpyF10VI GCNNNNNNNGC 7 cut(s) 91, 135, 139, 344, 404, 673, 701
HpyF3I CTNAG 3 cut(s) 10, 270, 578
Hsp92I GRCGYC 1 cut(s) 92
Hsp92II CATG 3 cut(s) 353, 428, 641
HspAI GCGC 4 cut(s) 23, 164, 347, 398
KroI GCCGGC 1 cut(s) 343
KroNI GCCGGC 1 cut(s) 345
Kzo9I GATC 1 cut(s) 323
LmnI GCTCC 2 cut(s) 30, 412
Lsp1109I GCAGC 4 cut(s) 435, 489, 532, 691
LweI GCATC 2 cut(s) 93, 607
MaeIII GTNAC 1 cut(s) 88
MalI GATC 1 cut(s) 325
MboI GATC 1 cut(s) 323
MboII GAAGA 5 cut(s) 326, 502, 539, 626, 701
MluCI AATT 1 cut(s) 204
MlyI GAGTC 3 cut(s) 60, 68, 359
MroNI GCCGGC 1 cut(s) 343
MseI TTAA 2 cut(s) 35, 564
MspI CCGG 3 cut(s) 95, 236, 344
MspR9I CCNGG 1 cut(s) 96
MvnI CGCG 2 cut(s) 20, 400
MwoI GCNNNNNNNGC 7 cut(s) 91, 135, 139, 344, 404, 673, 701
NaeI GCCGGC 1 cut(s) 345
NciI CCSGG 1 cut(s) 96
NdeII GATC 1 cut(s) 323
NgoMIV GCCGGC 1 cut(s) 343
NlaIII CATG 3 cut(s) 353, 428, 641
NlaIV GGNNCC 1 cut(s) 666
NmeAIII GCCGAG 3 cut(s) 48, 143, 347
NmuCI GTSAC 1 cut(s) 88
PcsI WCGNNNNNNNCGW 1 cut(s) 461
PdiI GCCGGC 1 cut(s) 345
PkrI GCNGC 5 cut(s) 22, 450, 504, 547, 706
PleI GAGTC 3 cut(s) 60, 68, 359
PpsI GAGTC 3 cut(s) 60, 68, 359
PspFI CCCAGC 2 cut(s) 112, 497
PspN4I GGNNCC 1 cut(s) 666
PspPI GGNCC 4 cut(s) 61, 115, 665, 716
RsaI GTAC 1 cut(s) 521
RsaNI GTAC 1 cut(s) 520
SaqAI TTAA 2 cut(s) 35, 564
SatI GCNGC 5 cut(s) 21, 449, 503, 546, 705
Sau3AI GATC 1 cut(s) 323
Sau96I GGNCC 4 cut(s) 61, 115, 665, 716
SchI GAGTC 3 cut(s) 60, 68, 359
ScrFI CCNGG 1 cut(s) 96
SfaNI GCATC 2 cut(s) 93, 607
SfcI CTRYAG 1 cut(s) 769
SinI GGWCC 1 cut(s) 716
Sse9I AATT 1 cut(s) 204
SsiI CCGC 6 cut(s) 20, 42, 123, 400, 407, 548
StyD4I CCNGG 1 cut(s) 94
TaqI TCGA 3 cut(s) 54, 305, 584
TasI AATT 1 cut(s) 204
TauI GCSGC 1 cut(s) 23
Tru1I TTAA 2 cut(s) 35, 564
Tru9I TTAA 2 cut(s) 35, 564
TscAI CASTG 2 cut(s) 256, 627
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 4 cut(s) 448, 502, 545, 704
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 3 cut(s) 143, 654, 744
TspGWI ACGGA 1 cut(s) 185
TspRI CASTG 2 cut(s) 256, 627
VpaK11BI GGWCC 1 cut(s) 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.