Rh1CG284400

Protein of unknown function (DUF455)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0011094
Physical Location & Seq
Reverse (-)
55584495 .. 55588427
3933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG284400.1

Sequence Viewer

Length: 873 bp
ATGGAGACCTTAGTTGACGCGGCGCTCCGAGTTTTAAACACCGCCGACCCCTTCGACAAGGCCCGACTCGGCGACTCGGTCGCCTCACAATGGCTCAACGGAACCATCACTCTCCCCTACAACCCAACCCTCGACCTCCCTGTACCGGACCGCCCCGCCAGGCTCACCCAAGTGAAGCTGGTGACGCCGAGTCAGATGCCGAAGCTGGGCCGAGGCGGTACCTTGCAGAGCAGGCAAGCAATGGTTCATAGCTTGGCGCACACGGAGAGTTGGGCGATTGACTTGTCTTGGGACATAATTGCGAGGTTTGGTAAGCAAGAGGCAATGCCGGTGGAGTTTTTCACTGATTTTGTGAAGGTGGCTCAGGACGAAGGGAGACATTTCAGTCTCTTGGCTTCGAGGCTGGAGGAGATGGGATCGTTTTATGGGGCTTTGCCGGCGCATGACGGGTTATGGGACTCGGCGACTGCTACTTCGGATGACTTGCTGGCGCGGTTGGCGGTGGAGCATTGTGTCCATGAGGCGAGAGGAATGGATGTACTGCCCACGACCATTGCGAGGTTTCGCAATGGGGGTGATGAGAAGACGGCTGGGCTGCTGGAGAGCGTGGTGTACCCTGAAGAAATCACGCATTGTGCTGCGGGAGTGAAATGGTTTAAGTATGTTTTCCTGAGGTCGATGGGAAAAGGTTTGGATGGAAATGAGGAAGATGCAGTGATTGAGAAGTTCCATGAAGTTGTGAGGAAGCATTTTAGGGGGCCTTTGAAGCCTCCTTTCAACGAAGAAGCGAGGAAAGCTGCTGGATTTGGTCCTCAATGGTATGAACCTCTTGCTGTCAAAGAGAGCAAGACTACTACTACTATAGCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF455

Protein Analysis

290

Amino Acids

32.17

Weight (kDa)

5.75

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF455 PF04305 13 - 275 5.9e-89 Protein of unknown function (DUF455)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04520
fragaria_vesca FvH4_7g18310 FvH4_7g18310 FvH4_7g18310 FvH4_7g18310
malus_domestica MD01G1099600.v1.1
prunus_persica Prupe.2G205100_v2.0.a1
pyrus_communis pycom01g12670
rosa_chinensis RchiOBHm_Chr1g0362011
rosa_laevigata RLG00000027680
rosa_multiflora Rmu_co8465241.1_g000001 Rmu_sc0010614.1_g000009
rosa_roxburghii Rroxscaffold_4G00294590
rosa_rugosa Rorug01G0292500 Rorug01G0292600
rosa_samantha Rh1AG303000 Rh1BG266200 Rh1CG284400 Rh1DG296200
rosa_wichuraiana Rw1G026980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 384
Acc65I GGTACC 1 cut(s) 218
AccB1I GGYRCC 1 cut(s) 218
AccII CGCG 2 cut(s) 20, 493
AciI CCGC 8 cut(s) 20, 42, 151, 156, 216, 493, 500, 641
AclWI GGATC 1 cut(s) 424
AcuI CTGAAG 1 cut(s) 639
AcyI GRCGYC 1 cut(s) 185
AfaI GTAC 4 cut(s) 144, 220, 540, 614
AfiI CCNNNNNNNGG 4 cut(s) 90, 145, 206, 558
AgsI TTSAA 2 cut(s) 766, 778
AhdI GACNNNNNGTC 1 cut(s) 189
AjnI CCWGG 1 cut(s) 158
AleI CACNNNNGTG 1 cut(s) 170
AluBI AGCT 4 cut(s) 178, 205, 252, 797
AluI AGCT 4 cut(s) 178, 205, 252, 797
Alw26I GTCTC 2 cut(s) 370, 392
AlwI GGATC 1 cut(s) 424
AoxI GGCC 3 cut(s) 60, 208, 758
ApeKI GCWGC 3 cut(s) 595, 638, 797
ArsI GACNNNNNNTTYG 2 cut(s) 457, 489
Asp718I GGTACC 1 cut(s) 218
AspLEI GCGC 4 cut(s) 25, 259, 442, 493
AspS9I GGNCC 5 cut(s) 61, 148, 208, 758, 809
AsuHPI GGTGA 3 cut(s) 157, 193, 587
AvaII GGWCC 2 cut(s) 148, 809
AxyI CCTNAGG 1 cut(s) 671
BanI GGYRCC 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 590
BbvI GCAGC 3 cut(s) 582, 625, 784
BccI CCATC 4 cut(s) 113, 406, 673, 689
BceAI ACGGC 1 cut(s) 603
BcgI CGANNNNNNTGC 2 cut(s) 178, 212
BciT130I CCWGG 1 cut(s) 160
BcoDI GTCTC 2 cut(s) 370, 392
BfmI CTRYAG 1 cut(s) 861
BfoI RGCGCY 1 cut(s) 26
BisI GCNGC 4 cut(s) 21, 596, 639, 798
BlsI GCNGC 4 cut(s) 22, 597, 640, 799
Bme1390I CCNGG 1 cut(s) 160
Bme18I GGWCC 2 cut(s) 148, 809
BmeRI GACNNNNNGTC 1 cut(s) 189
BmgT120I GGNCC 5 cut(s) 61, 148, 208, 758, 809
BmiI GGNNCC 3 cut(s) 103, 220, 759
BmrFI CCNGG 1 cut(s) 160
BmsI GCATC 2 cut(s) 186, 700
BpiI GAAGAC 1 cut(s) 590
BpmI CTGGAG 2 cut(s) 425, 620
Bpu10I CCTNAGC 1 cut(s) 363
BsaHI GRCGYC 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 211
BsaWI WCCGGW 1 cut(s) 145
Bsc4I CCNNNNNNNGG 4 cut(s) 90, 145, 206, 558
Bse118I RCCGGY 2 cut(s) 328, 436
Bse21I CCTNAGG 1 cut(s) 671
Bse3DI GCAATG 4 cut(s) 246, 330, 552, 574
BseBI CCWGG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 211
BseGI GGATG 3 cut(s) 484, 541, 700
BseLI CCNNNNNNNGG 4 cut(s) 90, 145, 206, 558
BseMI GCAATG 4 cut(s) 246, 330, 552, 574
BseMII CTCAG 2 cut(s) 377, 662
BseRI GAGGAG 1 cut(s) 422
BseXI GCAGC 3 cut(s) 582, 625, 784
BseYI CCCAGC 2 cut(s) 205, 590
Bsh1236I CGCG 2 cut(s) 20, 493
Bsh1285I CGRYCG 1 cut(s) 81
BshFI GGCC 3 cut(s) 62, 210, 760
BshNI GGYRCC 1 cut(s) 218
BsiEI CGRYCG 1 cut(s) 81
BsiSI CCGG 3 cut(s) 146, 329, 437
BslFI GGGAC 2 cut(s) 305, 470
BslI CCNNNNNNNGG 4 cut(s) 90, 145, 206, 558
BsmAI GTCTC 2 cut(s) 370, 392
BsmFI GGGAC 2 cut(s) 305, 470
BsnI GGCC 3 cut(s) 62, 210, 760
Bsp143I GATC 1 cut(s) 416
BspACI CCGC 8 cut(s) 20, 42, 151, 156, 216, 493, 500, 641
BspANI GGCC 3 cut(s) 62, 210, 760
BspCNI CTCAG 2 cut(s) 376, 663
BspFNI CGCG 2 cut(s) 20, 493
BspLI GGNNCC 3 cut(s) 103, 220, 759
BspPI GGATC 1 cut(s) 424
BspT107I GGYRCC 1 cut(s) 218
BsrDI GCAATG 4 cut(s) 246, 330, 552, 574
BsrFI RCCGGY 2 cut(s) 328, 436
BssAI RCCGGY 2 cut(s) 328, 436
BssECI CCNNGG 1 cut(s) 211
BssMI GATC 1 cut(s) 416
BssNI GRCGYC 1 cut(s) 185
Bst2UI CCWGG 1 cut(s) 160
BstACI GRCGYC 1 cut(s) 185
BstC8I GCNNGC 4 cut(s) 233, 237, 438, 489
BstDEI CTNAG 3 cut(s) 10, 363, 671
BstF5I GGATG 3 cut(s) 484, 541, 700
BstFNI CGCG 2 cut(s) 20, 493
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 4 cut(s) 25, 259, 442, 493
BstKTI GATC 1 cut(s) 419
BstMAI GTCTC 2 cut(s) 370, 392
BstMBI GATC 1 cut(s) 416
BstMCI CGRYCG 1 cut(s) 81
BstMWI GCNNNNNNNGC 6 cut(s) 184, 232, 437, 497, 766, 794
BstNI CCWGG 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 158
BstSFI CTRYAG 1 cut(s) 861
BstUI CGCG 2 cut(s) 20, 493
BstV1I GCAGC 3 cut(s) 582, 625, 784
BstV2I GAAGAC 1 cut(s) 590
Bsu36I CCTNAGG 1 cut(s) 671
BsuRI GGCC 3 cut(s) 62, 210, 760
BtsCI GGATG 3 cut(s) 484, 541, 700
BtsI GCAGTG 1 cut(s) 720
BtsIMutI CAGTG 2 cut(s) 342, 720
Cac8I GCNNGC 4 cut(s) 233, 237, 438, 489
CfoI GCGC 4 cut(s) 25, 259, 442, 493
Cfr10I RCCGGY 2 cut(s) 328, 436
Cfr13I GGNCC 5 cut(s) 61, 148, 208, 758, 809
CpoI CGGWCCG 1 cut(s) 148
CseI GACGC 2 cut(s) 26, 193
Csp6I GTAC 4 cut(s) 143, 219, 539, 613
CspCI CAANNNNNGTGG 4 cut(s) 312, 347, 535, 570
CspI CGGWCCG 1 cut(s) 148
CviAII CATG 3 cut(s) 443, 518, 731
CviQI GTAC 4 cut(s) 143, 219, 539, 613
DdeI CTNAG 3 cut(s) 10, 363, 671
DpnI GATC 1 cut(s) 418
DpnII GATC 1 cut(s) 416
DraI TTTAAA 1 cut(s) 36
DrdI GACNNNNNNGTC 1 cut(s) 384
DriI GACNNNNNGTC 1 cut(s) 189
DseDI GACNNNNNNGTC 1 cut(s) 384
Eam1105I GACNNNNNGTC 1 cut(s) 189
Eco47I GGWCC 2 cut(s) 148, 809
Eco57I CTGAAG 1 cut(s) 639
Eco81I CCTNAGG 1 cut(s) 671
EcoO109I RGGNCCY 1 cut(s) 758
EcoRII CCWGG 1 cut(s) 158
FaeI CATG 3 cut(s) 446, 521, 734
FaqI GGGAC 2 cut(s) 305, 470
FatI CATG 3 cut(s) 442, 517, 730
FauI CCCGC 2 cut(s) 163, 634
Fnu4HI GCNGC 4 cut(s) 21, 596, 639, 798
FokI GGATG 3 cut(s) 491, 548, 707
Fsp4HI GCNGC 4 cut(s) 21, 596, 639, 798
GlaI GCGC 4 cut(s) 24, 258, 441, 492
GluI GCNGC 4 cut(s) 21, 596, 639, 798
GsaI CCCAGC 2 cut(s) 209, 594
GsuI CTGGAG 2 cut(s) 425, 620
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 3 cut(s) 62, 210, 760
HapII CCGG 3 cut(s) 146, 329, 437
HgaI GACGC 2 cut(s) 26, 193
HhaI GCGC 4 cut(s) 25, 259, 442, 493
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 3 cut(s) 446, 521, 734
Hin6I GCGC 4 cut(s) 23, 257, 440, 491
HinP1I GCGC 4 cut(s) 23, 257, 440, 491
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 4 cut(s) 66, 74, 190, 458
HpaII CCGG 3 cut(s) 146, 329, 437
HphI GGTGA 3 cut(s) 157, 193, 587
Hpy166II GTNNAC 2 cut(s) 16, 613
Hpy188I TCNGA 3 cut(s) 29, 195, 478
Hpy188III TCNNGA 2 cut(s) 365, 670
Hpy8I GTNNAC 2 cut(s) 16, 613
HpyAV CCTTC 3 cut(s) 61, 349, 365
HpyCH4V TGCA 2 cut(s) 226, 713
HpyF10VI GCNNNNNNNGC 6 cut(s) 184, 232, 437, 497, 766, 794
HpyF3I CTNAG 3 cut(s) 10, 363, 671
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 3 cut(s) 446, 521, 734
HspAI GCGC 4 cut(s) 23, 257, 440, 491
KpnI GGTACC 1 cut(s) 222
KroI GCCGGC 1 cut(s) 436
KroNI GCCGGC 1 cut(s) 438
Kzo9I GATC 1 cut(s) 416
LmnI GCTCC 2 cut(s) 30, 505
Lsp1109I GCAGC 3 cut(s) 582, 625, 784
LweI GCATC 2 cut(s) 186, 700
MaeIII GTNAC 1 cut(s) 181
MalI GATC 1 cut(s) 418
MboI GATC 1 cut(s) 416
MboII GAAGA 4 cut(s) 595, 632, 719, 794
MluCI AATT 1 cut(s) 297
MlyI GAGTC 4 cut(s) 60, 68, 199, 452
MroNI GCCGGC 1 cut(s) 436
MseI TTAA 2 cut(s) 35, 657
MslI CAYNNNNRTG 1 cut(s) 170
MspI CCGG 3 cut(s) 146, 329, 437
MspR9I CCNGG 1 cut(s) 160
MvaI CCWGG 1 cut(s) 160
MvnI CGCG 2 cut(s) 20, 493
MwoI GCNNNNNNNGC 6 cut(s) 184, 232, 437, 497, 766, 794
NaeI GCCGGC 1 cut(s) 438
NdeII GATC 1 cut(s) 416
NgoMIV GCCGGC 1 cut(s) 436
NlaIII CATG 3 cut(s) 446, 521, 734
NlaIV GGNNCC 3 cut(s) 103, 220, 759
NmeAIII GCCGAG 4 cut(s) 48, 213, 236, 440
NmuCI GTSAC 1 cut(s) 181
OliI CACNNNNGTG 1 cut(s) 170
PcsI WCGNNNNNNNCGW 1 cut(s) 554
PdiI GCCGGC 1 cut(s) 438
PflFI GACNNNGTC 1 cut(s) 77
PkrI GCNGC 4 cut(s) 22, 597, 640, 799
PleI GAGTC 4 cut(s) 60, 68, 198, 452
PpsI GAGTC 4 cut(s) 60, 68, 198, 452
Psp6I CCWGG 1 cut(s) 158
PspFI CCCAGC 2 cut(s) 205, 590
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 3 cut(s) 103, 220, 759
PspPI GGNCC 5 cut(s) 61, 148, 208, 758, 809
PsyI GACNNNGTC 1 cut(s) 77
RsaI GTAC 4 cut(s) 144, 220, 540, 614
RsaNI GTAC 4 cut(s) 143, 219, 539, 613
RseI CAYNNNNRTG 1 cut(s) 170
Rsr2I CGGWCCG 1 cut(s) 148
RsrII CGGWCCG 1 cut(s) 148
SaqAI TTAA 2 cut(s) 35, 657
SatI GCNGC 4 cut(s) 21, 596, 639, 798
Sau3AI GATC 1 cut(s) 416
Sau96I GGNCC 5 cut(s) 61, 148, 208, 758, 809
SchI GAGTC 4 cut(s) 60, 68, 199, 452
ScrFI CCNGG 1 cut(s) 160
SfaNI GCATC 2 cut(s) 186, 700
SfcI CTRYAG 1 cut(s) 861
SinI GGWCC 2 cut(s) 148, 809
SmiMI CAYNNNNRTG 1 cut(s) 170
Sse9I AATT 1 cut(s) 297
SsiI CCGC 8 cut(s) 20, 42, 151, 156, 216, 493, 500, 641
StyD4I CCNGG 1 cut(s) 158
TaqI TCGA 4 cut(s) 54, 132, 398, 677
TaqII GACCGA 1 cut(s) 67
TasI AATT 1 cut(s) 297
TatI WGTACW 1 cut(s) 538
TauI GCSGC 1 cut(s) 23
Tru1I TTAA 2 cut(s) 35, 657
Tru9I TTAA 2 cut(s) 35, 657
TscAI CASTG 2 cut(s) 349, 720
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 3 cut(s) 595, 638, 797
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 3 cut(s) 236, 747, 837
TspGWI ACGGA 2 cut(s) 114, 278
TspRI CASTG 2 cut(s) 349, 720
Tth111I GACNNNGTC 1 cut(s) 77
VpaK11BI GGWCC 2 cut(s) 148, 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.