Rorug01G0292500

Protein of unknown function (DUF455)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0011094
Physical Location & Seq
Reverse (-)
40882733 .. 40883965
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0292500.1

Sequence Viewer

Length: 480 bp
ATGCTCAACTGTTTGGTTACAGAAAGGAGGTGCTTACTTGGCCATATATCTTTGGGCGTTCATGCTTGTTACTCTCTTGTGATGCTGACCATCTACCCTATTCTAATAGCCCCAATCTTTAACAAGTTCACCACTCTTCCAGAGGGTCAGCTCAGGGAAAAAATTGAGAAACTCTGTTCTTCCCTTGATTTTCCATTGAAGAAGCTCTTTGTCATTGATGGATCAACAAGATCAACTCACAGCAATGCCTATATGTACGGTTTTTTTAACAACAAGAGAATTGTCCTCTATGATACACTGATTCAGCGGTGCAAAAATGATGAGGAAGTTGTAGCTGTTCTAGCTCATGAGCTACGCCATTGGAAGCTTAATCACACAGTCTACTTATTTATTTCTGGGCAGATCCGTATGCTTTTAAAATTCGGGGGATACGCTCTCCTGAGAAACTCCAGCAGTCTTTTTCAAAGTTTTGGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF455

Protein Analysis

159

Amino Acids

18.28

Weight (kDa)

9.3

Isoelectric Point (pI)

53.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M48 PF01435 47 - 158 2.6e-27 Peptidase family M48
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04520
fragaria_vesca FvH4_7g18310 FvH4_7g18310 FvH4_7g18310 FvH4_7g18310
malus_domestica MD01G1099600.v1.1
prunus_persica Prupe.2G205100_v2.0.a1
pyrus_communis pycom01g12670
rosa_chinensis RchiOBHm_Chr1g0362011
rosa_laevigata RLG00000027680
rosa_multiflora Rmu_co8465241.1_g000001 Rmu_sc0010614.1_g000009
rosa_roxburghii Rroxscaffold_4G00294590
rosa_rugosa Rorug01G0292500 Rorug01G0292600
rosa_samantha Rh1AG303000 Rh1BG266200 Rh1CG284400 Rh1DG296200
rosa_wichuraiana Rw1G026980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 381
AciI CCGC 1 cut(s) 307
AclWI GGATC 2 cut(s) 229, 397
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 1 cut(s) 419
AfaI GTAC 1 cut(s) 257
AgsI TTSAA 2 cut(s) 199, 464
AluBI AGCT 6 cut(s) 151, 205, 335, 344, 352, 367
AluI AGCT 6 cut(s) 151, 205, 335, 344, 352, 367
AlwI GGATC 2 cut(s) 229, 397
AoxI GGCC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 419
AsuHPI GGTGA 1 cut(s) 121
BalI TGGCCA 1 cut(s) 42
BccI CCATC 2 cut(s) 98, 212
BciVI GTATCC 1 cut(s) 422
BfaI CTAG 1 cut(s) 341
BfuI GTATCC 1 cut(s) 422
BmsI GCATC 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 433
Bpu10I CCTNAGC 1 cut(s) 152
Bse3DI GCAATG 1 cut(s) 250
BseMI GCAATG 1 cut(s) 250
BseMII CTCAG 2 cut(s) 166, 431
BshFI GGCC 1 cut(s) 42
BsnI GGCC 1 cut(s) 42
Bsp143I GATC 3 cut(s) 221, 230, 402
BspACI CCGC 1 cut(s) 307
BspANI GGCC 1 cut(s) 42
BspCNI CTCAG 2 cut(s) 165, 432
BspHI TCATGA 1 cut(s) 346
BspPI GGATC 2 cut(s) 229, 397
BsrDI GCAATG 1 cut(s) 250
BssMI GATC 3 cut(s) 221, 230, 402
Bst4CI ACNGT 3 cut(s) 11, 260, 379
Bst6I CTCTTC 1 cut(s) 141
BstDEI CTNAG 2 cut(s) 152, 440
BstKTI GATC 3 cut(s) 224, 233, 405
BstMBI GATC 3 cut(s) 221, 230, 402
BstMWI GCNNNNNNNGC 2 cut(s) 39, 341
BstX2I RGATCY 1 cut(s) 402
BstYI RGATCY 1 cut(s) 402
BsuI GTATCC 1 cut(s) 422
BsuRI GGCC 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 296
CciI TCATGA 1 cut(s) 346
Csp6I GTAC 1 cut(s) 256
CviAII CATG 2 cut(s) 62, 347
CviJI RGCY 8 cut(s) 42, 110, 151, 205, 335, 344, 352, 367
CviKI_1 RGCY 8 cut(s) 42, 110, 151, 205, 335, 344, 352, 367
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 2 cut(s) 152, 440
DpnI GATC 3 cut(s) 223, 232, 404
DpnII GATC 3 cut(s) 221, 230, 402
DraI TTTAAA 1 cut(s) 417
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
FaeI CATG 2 cut(s) 65, 350
FaiI YATR 8 cut(s) 45, 47, 63, 252, 254, 291, 348, 410
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 2 cut(s) 61, 346
FblI GTMKAC 1 cut(s) 381
FspBI CTAG 1 cut(s) 341
GsuI CTGGAG 1 cut(s) 433
HaeIII GGCC 1 cut(s) 42
Hin1II CATG 2 cut(s) 65, 350
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 1 cut(s) 301
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 2 cut(s) 129, 382
Hpy188III TCNNGA 3 cut(s) 140, 347, 439
Hpy8I GTNNAC 2 cut(s) 129, 382
HpyCH4III ACNGT 3 cut(s) 11, 260, 379
HpyCH4V TGCA 1 cut(s) 312
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 341
HpyF3I CTNAG 2 cut(s) 152, 440
Hsp92II CATG 2 cut(s) 65, 350
Kzo9I GATC 3 cut(s) 221, 230, 402
LpnPI CCDG 5 cut(s) 139, 153, 381, 452, 463
LweI GCATC 1 cut(s) 72
MaeI CTAG 1 cut(s) 341
MaeIII GTNAC 2 cut(s) 16, 68
MalI GATC 3 cut(s) 223, 232, 404
MboI GATC 3 cut(s) 221, 230, 402
MboII GAAGA 3 cut(s) 128, 171, 211
MflI RGATCY 1 cut(s) 402
MlsI TGGCCA 1 cut(s) 42
MluCI AATT 3 cut(s) 162, 279, 419
MluNI TGGCCA 1 cut(s) 42
MnlI CCTC 4 cut(s) 21, 136, 296, 316
Mox20I TGGCCA 1 cut(s) 42
MscI TGGCCA 1 cut(s) 42
MseI TTAA 4 cut(s) 120, 267, 369, 416
MslI CAYNNNNRTG 1 cut(s) 243
Msp20I TGGCCA 1 cut(s) 42
MspA1I CMGCKG 1 cut(s) 307
MwoI GCNNNNNNNGC 2 cut(s) 39, 341
NdeII GATC 3 cut(s) 221, 230, 402
NlaIII CATG 2 cut(s) 65, 350
PagI TCATGA 1 cut(s) 346
PfeI GAWTC 1 cut(s) 301
PsuI RGATCY 1 cut(s) 402
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
RseI CAYNNNNRTG 1 cut(s) 243
SaqAI TTAA 4 cut(s) 120, 267, 369, 416
Sau3AI GATC 3 cut(s) 221, 230, 402
SetI ASST 7 cut(s) 32, 153, 207, 337, 346, 354, 369
SfaNI GCATC 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 243
Sse9I AATT 3 cut(s) 162, 279, 419
SsiI CCGC 1 cut(s) 307
SspMI CTAG 1 cut(s) 341
TaaI ACNGT 3 cut(s) 11, 260, 379
TasI AATT 3 cut(s) 162, 279, 419
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 4 cut(s) 120, 267, 369, 416
Tru9I TTAA 4 cut(s) 120, 267, 369, 416
TscAI CASTG 1 cut(s) 303
TspDTI ATGAA 1 cut(s) 50
TspGWI ACGGA 1 cut(s) 395
TspRI CASTG 1 cut(s) 303
XapI RAATTY 1 cut(s) 419
XmiI GTMKAC 1 cut(s) 381
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.