Rroxscaffold_4G00294590

Protein of unknown function (DUF455)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0011094
Physical Location & Seq
Forward (+)
14628663 .. 14631272
2610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00294590.1

Sequence Viewer

Length: 966 bp
ATGACTCGAACCGCACCGCACCACCACCGATTCTTAACCATTCTTAGTTTTTATATGCTCATCCACACAAATGAAGGAGCTTGGGTTCAATCAATGGAGACCTTAGTTGAAGCGGCGCTCCGAGTTTTAAACACCGCCGACCCCTTCGACAAGGCCCGACTCGGCGACTCGGTCGCCTCAGAATGGCTCAACGGAACCATCACTCTCCCCTACCATCCAACCCTCGACCTCGCCGTGCCGGACCGCCCCGCCAGACTCACCCAAGTGAAGCTGGTGACGCCGAGTCAGATGCCGAAGCTGGGCCGAGGCGGTAGCTTGCAGAGCAGGCAAGCAATGGTTCATAGCTTGGCGCACACGGAGAGCTGGGCGATTGACTTGTCTTGGGACATAATTGCTAGGTTTGGTAAGCAAGAGGCGATGCCGGTGGAATTTTTCACTGATTTTGTGAAGGTGGCTCAGGACGAAGGGAGACATTTCAGTCTCTTGGCTTCGAGGCTGGAAGAGATGGGATCGTTTTATGGGGCTTTGCCGGCGCATGACGGGTTATGGGACTCGGCGACTGCTACTTCGGATGACTTGCTGGCGCGGTTGGCGGTGGAGCATTGTGTCCATGAGGCGAGAGGAATGGATGTGCTGCCCACGACCATTGCGAGGTTTCGCAATGGGGGTGATGAGAAGACGGCTGGGCTGCTGGAGAGCGTGGTATACCCTGAAGAAATCACGCATTGTGCTGCGGGAGTGAAATGGTTTAAGTATGTTTTCCTGAGGTCGATGGGAAAAGGTTTGGATGGAAATGAGGAAGATGCAGTGATTGAGAAGTTCCATGAAGTTGTGAGGAAGCATTTTAGGGGGCCTTTGAAGCCTCCTTTCAACGAAGAAGCGAGGAAAGCTGCTGGATTTGGTCCTCAATGGTATGAACCTCTTGCTGTCAAAGAGAGCAAGACTGCTACTACTTTAGCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF455

Protein Analysis

321

Amino Acids

35.81

Weight (kDa)

6.06

Isoelectric Point (pI)

39.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF455 PF04305 44 - 306 1.6e-88 Protein of unknown function (DUF455)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04520
fragaria_vesca FvH4_7g18310 FvH4_7g18310 FvH4_7g18310 FvH4_7g18310
malus_domestica MD01G1099600.v1.1
prunus_persica Prupe.2G205100_v2.0.a1
pyrus_communis pycom01g12670
rosa_chinensis RchiOBHm_Chr1g0362011
rosa_laevigata RLG00000027680
rosa_multiflora Rmu_co8465241.1_g000001 Rmu_sc0010614.1_g000009
rosa_roxburghii Rroxscaffold_4G00294590
rosa_rugosa Rorug01G0292500 Rorug01G0292600
rosa_samantha Rh1AG303000 Rh1BG266200 Rh1CG284400 Rh1DG296200
rosa_wichuraiana Rw1G026980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 477
AccI GTMKAC 1 cut(s) 705
AccII CGCG 1 cut(s) 586
AclWI GGATC 1 cut(s) 517
AcsI RAATTY 1 cut(s) 428
AcuI CTGAAG 1 cut(s) 732
AcyI GRCGYC 1 cut(s) 278
AfiI CCNNNNNNNGG 3 cut(s) 183, 299, 651
AgsI TTSAA 4 cut(s) 89, 110, 859, 871
AhdI GACNNNNNGTC 1 cut(s) 282
AleI CACNNNNGTG 1 cut(s) 263
AloI GAACNNNNNNTCC 2 cut(s) 69, 101
AluBI AGCT 7 cut(s) 80, 271, 298, 315, 345, 363, 890
AluI AGCT 7 cut(s) 80, 271, 298, 315, 345, 363, 890
Alw26I GTCTC 3 cut(s) 92, 463, 485
AlwI GGATC 1 cut(s) 517
AoxI GGCC 3 cut(s) 153, 301, 851
ApeKI GCWGC 4 cut(s) 634, 688, 731, 890
ApoI RAATTY 1 cut(s) 428
ArsI GACNNNNNNTTYG 2 cut(s) 550, 582
AspLEI GCGC 4 cut(s) 118, 352, 535, 586
AspS9I GGNCC 5 cut(s) 154, 241, 301, 851, 902
AsuHPI GGTGA 3 cut(s) 250, 286, 680
AvaII GGWCC 2 cut(s) 241, 902
AxyI CCTNAGG 1 cut(s) 764
BbsI GAAGAC 1 cut(s) 683
BbvI GCAGC 4 cut(s) 621, 675, 718, 877
BccI CCATC 5 cut(s) 206, 222, 499, 766, 782
BceAI ACGGC 2 cut(s) 218, 696
BcgI CGANNNNNNTGC 2 cut(s) 271, 305
BcoDI GTCTC 3 cut(s) 92, 463, 485
BfaI CTAG 1 cut(s) 396
BfoI RGCGCY 1 cut(s) 119
BisI GCNGC 5 cut(s) 114, 635, 689, 732, 891
BlsI GCNGC 5 cut(s) 115, 636, 690, 733, 892
Bme18I GGWCC 2 cut(s) 241, 902
BmeRI GACNNNNNGTC 1 cut(s) 282
BmgT120I GGNCC 5 cut(s) 154, 241, 301, 851, 902
BmiI GGNNCC 2 cut(s) 196, 852
BmsI GCATC 3 cut(s) 279, 408, 793
BpiI GAAGAC 1 cut(s) 683
BpmI CTGGAG 1 cut(s) 713
Bpu10I CCTNAGC 1 cut(s) 456
BsaHI GRCGYC 1 cut(s) 278
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 304
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bsc4I CCNNNNNNNGG 3 cut(s) 183, 299, 651
Bse118I RCCGGY 2 cut(s) 421, 529
Bse21I CCTNAGG 1 cut(s) 764
Bse3DI GCAATG 3 cut(s) 339, 645, 667
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 5 cut(s) 60, 214, 577, 634, 793
BseLI CCNNNNNNNGG 3 cut(s) 183, 299, 651
BseMI GCAATG 3 cut(s) 339, 645, 667
BseMII CTCAG 3 cut(s) 192, 470, 755
BseXI GCAGC 4 cut(s) 621, 675, 718, 877
BseYI CCCAGC 3 cut(s) 298, 363, 683
Bsh1236I CGCG 1 cut(s) 586
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 3 cut(s) 155, 303, 853
BsiEI CGRYCG 1 cut(s) 174
BsiSI CCGG 3 cut(s) 239, 422, 530
BslFI GGGAC 2 cut(s) 398, 563
BslI CCNNNNNNNGG 3 cut(s) 183, 299, 651
BsmAI GTCTC 3 cut(s) 92, 463, 485
BsmFI GGGAC 2 cut(s) 398, 563
BsnI GGCC 3 cut(s) 155, 303, 853
Bso31I GGTCTC 1 cut(s) 92
Bsp143I GATC 1 cut(s) 509
BspANI GGCC 3 cut(s) 155, 303, 853
BspCNI CTCAG 3 cut(s) 191, 469, 756
BspFNI CGCG 1 cut(s) 586
BspLI GGNNCC 2 cut(s) 196, 852
BspPI GGATC 1 cut(s) 517
BspTNI GGTCTC 1 cut(s) 92
BsrDI GCAATG 3 cut(s) 339, 645, 667
BsrFI RCCGGY 2 cut(s) 421, 529
BssAI RCCGGY 2 cut(s) 421, 529
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 1 cut(s) 509
BssNAI GTATAC 1 cut(s) 706
BssNI GRCGYC 1 cut(s) 278
Bst1107I GTATAC 1 cut(s) 706
Bst6I CTCTTC 1 cut(s) 495
BstACI GRCGYC 1 cut(s) 278
BstC8I GCNNGC 5 cut(s) 317, 326, 330, 531, 582
BstDEI CTNAG 5 cut(s) 44, 103, 178, 456, 764
BstF5I GGATG 5 cut(s) 60, 214, 577, 634, 793
BstFNI CGCG 1 cut(s) 586
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 4 cut(s) 118, 352, 535, 586
BstKTI GATC 1 cut(s) 512
BstMAI GTCTC 3 cut(s) 92, 463, 485
BstMBI GATC 1 cut(s) 509
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 7 cut(s) 277, 321, 325, 530, 590, 859, 887
BstUI CGCG 1 cut(s) 586
BstV1I GCAGC 4 cut(s) 621, 675, 718, 877
BstV2I GAAGAC 1 cut(s) 683
BstZ17I GTATAC 1 cut(s) 706
Bsu36I CCTNAGG 1 cut(s) 764
BsuRI GGCC 3 cut(s) 155, 303, 853
BtgZI GCGATG 1 cut(s) 431
BtsCI GGATG 5 cut(s) 60, 214, 577, 634, 793
BtsI GCAGTG 1 cut(s) 813
BtsIMutI CAGTG 2 cut(s) 435, 813
Cac8I GCNNGC 5 cut(s) 317, 326, 330, 531, 582
CfoI GCGC 4 cut(s) 118, 352, 535, 586
Cfr10I RCCGGY 2 cut(s) 421, 529
Cfr13I GGNCC 5 cut(s) 154, 241, 301, 851, 902
CpoI CGGWCCG 1 cut(s) 241
CseI GACGC 1 cut(s) 286
CspCI CAANNNNNGTGG 2 cut(s) 628, 663
CspI CGGWCCG 1 cut(s) 241
CviAII CATG 3 cut(s) 536, 611, 824
DdeI CTNAG 5 cut(s) 44, 103, 178, 456, 764
DpnI GATC 1 cut(s) 511
DpnII GATC 1 cut(s) 509
DraI TTTAAA 1 cut(s) 129
DrdI GACNNNNNNGTC 1 cut(s) 477
DriI GACNNNNNGTC 1 cut(s) 282
DseDI GACNNNNNNGTC 1 cut(s) 477
Eam1104I CTCTTC 1 cut(s) 495
Eam1105I GACNNNNNGTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 495
Eco31I GGTCTC 1 cut(s) 92
Eco47I GGWCC 2 cut(s) 241, 902
Eco57I CTGAAG 1 cut(s) 732
Eco81I CCTNAGG 1 cut(s) 764
EcoO109I RGGNCCY 1 cut(s) 851
FaeI CATG 3 cut(s) 539, 614, 827
FaqI GGGAC 2 cut(s) 398, 563
FatI CATG 3 cut(s) 535, 610, 823
FauI CCCGC 2 cut(s) 256, 727
FblI GTMKAC 1 cut(s) 705
Fnu4HI GCNGC 5 cut(s) 114, 635, 689, 732, 891
FokI GGATG 5 cut(s) 47, 201, 584, 641, 800
Fsp4HI GCNGC 5 cut(s) 114, 635, 689, 732, 891
FspBI CTAG 1 cut(s) 396
GlaI GCGC 4 cut(s) 117, 351, 534, 585
GluI GCNGC 5 cut(s) 114, 635, 689, 732, 891
GsaI CCCAGC 3 cut(s) 302, 367, 687
GsuI CTGGAG 1 cut(s) 713
HaeII RGCGCY 1 cut(s) 119
HaeIII GGCC 3 cut(s) 155, 303, 853
HapII CCGG 3 cut(s) 239, 422, 530
HgaI GACGC 1 cut(s) 286
HhaI GCGC 4 cut(s) 118, 352, 535, 586
Hin1I GRCGYC 1 cut(s) 278
Hin1II CATG 3 cut(s) 539, 614, 827
Hin6I GCGC 4 cut(s) 116, 350, 533, 584
HinP1I GCGC 4 cut(s) 116, 350, 533, 584
HinfI GANTC 7 cut(s) 4, 30, 159, 167, 255, 283, 551
HpaII CCGG 3 cut(s) 239, 422, 530
HphI GGTGA 3 cut(s) 250, 286, 680
Hpy166II GTNNAC 1 cut(s) 706
Hpy188I TCNGA 4 cut(s) 122, 181, 288, 571
Hpy188III TCNNGA 2 cut(s) 458, 763
Hpy8I GTNNAC 1 cut(s) 706
HpyAV CCTTC 4 cut(s) 68, 154, 442, 458
HpyCH4V TGCA 2 cut(s) 319, 806
HpyF10VI GCNNNNNNNGC 7 cut(s) 277, 321, 325, 530, 590, 859, 887
HpyF3I CTNAG 5 cut(s) 44, 103, 178, 456, 764
Hsp92I GRCGYC 1 cut(s) 278
Hsp92II CATG 3 cut(s) 539, 614, 827
HspAI GCGC 4 cut(s) 116, 350, 533, 584
KroI GCCGGC 1 cut(s) 529
KroNI GCCGGC 1 cut(s) 531
Kzo9I GATC 1 cut(s) 509
LmnI GCTCC 3 cut(s) 77, 123, 598
Lsp1109I GCAGC 4 cut(s) 621, 675, 718, 877
LweI GCATC 3 cut(s) 279, 408, 793
MaeI CTAG 1 cut(s) 396
MaeIII GTNAC 1 cut(s) 274
MalI GATC 1 cut(s) 511
MboI GATC 1 cut(s) 509
MboII GAAGA 5 cut(s) 512, 688, 725, 812, 887
MluCI AATT 2 cut(s) 390, 428
MlyI GAGTC 5 cut(s) 153, 161, 249, 292, 545
MmeI TCCRAC 1 cut(s) 242
MroNI GCCGGC 1 cut(s) 529
MseI TTAA 3 cut(s) 35, 128, 750
MslI CAYNNNNRTG 2 cut(s) 69, 263
MspI CCGG 3 cut(s) 239, 422, 530
MvnI CGCG 1 cut(s) 586
MwoI GCNNNNNNNGC 7 cut(s) 277, 321, 325, 530, 590, 859, 887
NaeI GCCGGC 1 cut(s) 531
NdeII GATC 1 cut(s) 509
NgoMIV GCCGGC 1 cut(s) 529
NlaIII CATG 3 cut(s) 539, 614, 827
NlaIV GGNNCC 2 cut(s) 196, 852
NmeAIII GCCGAG 4 cut(s) 141, 306, 329, 533
NmuCI GTSAC 1 cut(s) 274
OliI CACNNNNGTG 1 cut(s) 263
PcsI WCGNNNNNNNCGW 2 cut(s) 231, 647
PdiI GCCGGC 1 cut(s) 531
PfeI GAWTC 1 cut(s) 30
PflFI GACNNNGTC 1 cut(s) 170
PkrI GCNGC 5 cut(s) 115, 636, 690, 733, 892
PleI GAGTC 5 cut(s) 153, 161, 249, 291, 545
PpsI GAGTC 5 cut(s) 153, 161, 249, 291, 545
PspFI CCCAGC 3 cut(s) 298, 363, 683
PspN4I GGNNCC 2 cut(s) 196, 852
PspPI GGNCC 5 cut(s) 154, 241, 301, 851, 902
PsyI GACNNNGTC 1 cut(s) 170
RseI CAYNNNNRTG 2 cut(s) 69, 263
Rsr2I CGGWCCG 1 cut(s) 241
RsrII CGGWCCG 1 cut(s) 241
SaqAI TTAA 3 cut(s) 35, 128, 750
SatI GCNGC 5 cut(s) 114, 635, 689, 732, 891
Sau3AI GATC 1 cut(s) 509
Sau96I GGNCC 5 cut(s) 154, 241, 301, 851, 902
SchI GAGTC 5 cut(s) 153, 161, 249, 292, 545
SfaNI GCATC 3 cut(s) 279, 408, 793
SinI GGWCC 2 cut(s) 241, 902
SmiMI CAYNNNNRTG 2 cut(s) 69, 263
Sse9I AATT 2 cut(s) 390, 428
SspMI CTAG 1 cut(s) 396
TaqI TCGA 5 cut(s) 7, 147, 225, 491, 770
TaqII GACCGA 1 cut(s) 160
TasI AATT 2 cut(s) 390, 428
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 3 cut(s) 35, 128, 750
Tru9I TTAA 3 cut(s) 35, 128, 750
TscAI CASTG 2 cut(s) 442, 813
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 4 cut(s) 634, 688, 731, 890
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 4 cut(s) 87, 329, 840, 930
TspGWI ACGGA 2 cut(s) 207, 371
TspRI CASTG 2 cut(s) 442, 813
Tth111I GACNNNGTC 1 cut(s) 170
VpaK11BI GGWCC 2 cut(s) 241, 902
XapI RAATTY 1 cut(s) 428
XmiI GTMKAC 1 cut(s) 705
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.