Rh1DG296200

Protein of unknown function (DUF455)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0011094
Physical Location & Seq
Reverse (-)
52176953 .. 52177995
1043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG296200.1

Sequence Viewer

Length: 897 bp
ATGAAGGAGCTTGGGGTTCAATCAATGGAGACCTTAGTTGAAGCGGCGCTCCGAGTTTTAAACACCGCCGACCCCTTCGACAAGGCCCGACTCGGCTACTTGGTCGCCTCACAATGGCTCAACGGAACCATCACTCTCCCCTACCACCCAACCCTCGACCTCCCCATACCGGACCGCCCCGCCAGGCTCACCCAAGTGAAGCTGGTGACGCCGAGTCAGATGCCGAAGCTGGGCCGAGGCGGTAGCTTGCAGAGCAGGCAAGCAATGGTTCATAGCTTGGCGCACACGGAGAGCTGGGCGATTGACTTGTCTTGGGACATAATTGCTAGGTTTGGTAAGCAAGAGGCAATGCCGGTGGAGTTTTTCACTGATTTCGTGAAGGTGGCTCAGGACGAAGGGAGACATTTCAGTCTCTTGGCTTCGAGGCTGGAAGAGATGGGATCGTTTTATGGGGCTTTGCCGGCGCATGACGGGTTATGGGACTCGGCGACTGCTACTTCGGATGACCTGCTGGCGCGGTTGGCGGTGGAGCATTGTGTCCATGAGGCGAGAGGACTGGATGTGCTGCCCACGACCATTGCGAGGTTTCGCAATGGGGGTGATGAGAAGACGGCGGGGCTGCTGGAGAGCGTGGTGTACCCTGAAGAGATCACGCATTGTGCTGCGGGAGTGAAATGGTTTAAGTATGTTTTCCTGAGGTCGATGGGAAAAGGTTTGGATGGAAATGAGGAAGATGCAGTGATTGAGAAGTTCCATGAAGTTGTGAGGAAGCATTTTAGGGGGCCTTTGAAGCCTCCTTTCAACGAAGAAGCGAGGAAAGCTGCTGGATTTGGTCCTCAATGGTATGAACCTCTTGCTGTCAAAGAGAGCAAGACTATTACTACTGTAGCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF455

Protein Analysis

298

Amino Acids

33.13

Weight (kDa)

5.95

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF455 PF04305 21 - 283 1.2e-88 Protein of unknown function (DUF455)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04520
fragaria_vesca FvH4_7g18310 FvH4_7g18310 FvH4_7g18310 FvH4_7g18310
malus_domestica MD01G1099600.v1.1
prunus_persica Prupe.2G205100_v2.0.a1
pyrus_communis pycom01g12670
rosa_chinensis RchiOBHm_Chr1g0362011
rosa_laevigata RLG00000027680
rosa_multiflora Rmu_co8465241.1_g000001 Rmu_sc0010614.1_g000009
rosa_roxburghii Rroxscaffold_4G00294590
rosa_rugosa Rorug01G0292500 Rorug01G0292600
rosa_samantha Rh1AG303000 Rh1BG266200 Rh1CG284400 Rh1DG296200
rosa_wichuraiana Rw1G026980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 408
Acc36I ACCTGC 1 cut(s) 516
AccII CGCG 1 cut(s) 517
AciI CCGC 9 cut(s) 44, 66, 175, 180, 240, 517, 524, 614, 665
AclWI GGATC 1 cut(s) 448
AcuI CTGAAG 1 cut(s) 663
AcyI GRCGYC 1 cut(s) 209
AfaI GTAC 1 cut(s) 638
AfiI CCNNNNNNNGG 4 cut(s) 114, 169, 230, 582
AgsI TTSAA 4 cut(s) 20, 41, 790, 802
AhdI GACNNNNNGTC 1 cut(s) 213
AjnI CCWGG 1 cut(s) 182
AleI CACNNNNGTG 1 cut(s) 194
AluBI AGCT 7 cut(s) 10, 202, 229, 246, 276, 294, 821
AluI AGCT 7 cut(s) 10, 202, 229, 246, 276, 294, 821
Alw26I GTCTC 3 cut(s) 23, 394, 416
AlwI GGATC 1 cut(s) 448
AoxI GGCC 3 cut(s) 84, 232, 782
ApeKI GCWGC 4 cut(s) 565, 619, 662, 821
ArsI GACNNNNNNTTYG 2 cut(s) 481, 513
AspLEI GCGC 4 cut(s) 49, 283, 466, 517
AspS9I GGNCC 5 cut(s) 85, 172, 232, 782, 833
AsuHPI GGTGA 3 cut(s) 181, 217, 611
AvaII GGWCC 2 cut(s) 172, 833
AxyI CCTNAGG 1 cut(s) 695
BbsI GAAGAC 1 cut(s) 614
BbvI GCAGC 4 cut(s) 552, 606, 649, 808
BccI CCATC 4 cut(s) 137, 430, 697, 713
BceAI ACGGC 1 cut(s) 627
BcgI CGANNNNNNTGC 2 cut(s) 202, 236
BciT130I CCWGG 1 cut(s) 184
BcoDI GTCTC 3 cut(s) 23, 394, 416
BfaI CTAG 1 cut(s) 327
BfmI CTRYAG 1 cut(s) 885
BfoI RGCGCY 1 cut(s) 50
BfuAI ACCTGC 1 cut(s) 516
BisI GCNGC 5 cut(s) 45, 566, 620, 663, 822
BlsI GCNGC 5 cut(s) 46, 567, 621, 664, 823
Bme1390I CCNGG 1 cut(s) 184
Bme18I GGWCC 2 cut(s) 172, 833
BmeRI GACNNNNNGTC 1 cut(s) 213
BmgT120I GGNCC 5 cut(s) 85, 172, 232, 782, 833
BmiI GGNNCC 2 cut(s) 127, 783
BmrFI CCNGG 1 cut(s) 184
BmsI GCATC 2 cut(s) 210, 724
BpiI GAAGAC 1 cut(s) 614
BpmI CTGGAG 1 cut(s) 644
Bpu10I CCTNAGC 1 cut(s) 387
BsaHI GRCGYC 1 cut(s) 209
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 235
BsaWI WCCGGW 1 cut(s) 169
Bsc4I CCNNNNNNNGG 4 cut(s) 114, 169, 230, 582
Bse118I RCCGGY 2 cut(s) 352, 460
Bse1I ACTGG 1 cut(s) 561
Bse21I CCTNAGG 1 cut(s) 695
Bse3DI GCAATG 4 cut(s) 270, 354, 576, 598
BseBI CCWGG 1 cut(s) 184
BseDI CCNNGG 1 cut(s) 235
BseGI GGATG 3 cut(s) 508, 565, 724
BseLI CCNNNNNNNGG 4 cut(s) 114, 169, 230, 582
BseMI GCAATG 4 cut(s) 270, 354, 576, 598
BseMII CTCAG 2 cut(s) 401, 686
BseNI ACTGG 1 cut(s) 561
BseXI GCAGC 4 cut(s) 552, 606, 649, 808
BseYI CCCAGC 2 cut(s) 229, 294
Bsh1236I CGCG 1 cut(s) 517
BshFI GGCC 3 cut(s) 86, 234, 784
BsiSI CCGG 3 cut(s) 170, 353, 461
BslFI GGGAC 2 cut(s) 329, 494
BslI CCNNNNNNNGG 4 cut(s) 114, 169, 230, 582
BsmAI GTCTC 3 cut(s) 23, 394, 416
BsmFI GGGAC 2 cut(s) 329, 494
BsnI GGCC 3 cut(s) 86, 234, 784
Bso31I GGTCTC 1 cut(s) 23
Bsp143I GATC 2 cut(s) 440, 648
BspACI CCGC 9 cut(s) 44, 66, 175, 180, 240, 517, 524, 614, 665
BspANI GGCC 3 cut(s) 86, 234, 784
BspCNI CTCAG 2 cut(s) 400, 687
BspFNI CGCG 1 cut(s) 517
BspLI GGNNCC 2 cut(s) 127, 783
BspMI ACCTGC 1 cut(s) 516
BspPI GGATC 1 cut(s) 448
BspTNI GGTCTC 1 cut(s) 23
BsrDI GCAATG 4 cut(s) 270, 354, 576, 598
BsrFI RCCGGY 2 cut(s) 352, 460
BsrI ACTGG 1 cut(s) 561
BssAI RCCGGY 2 cut(s) 352, 460
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 2 cut(s) 440, 648
BssNI GRCGYC 1 cut(s) 209
Bst2UI CCWGG 1 cut(s) 184
Bst4CI ACNGT 1 cut(s) 886
Bst6I CTCTTC 2 cut(s) 426, 639
BstACI GRCGYC 1 cut(s) 209
BstC8I GCNNGC 5 cut(s) 248, 257, 261, 462, 513
BstDEI CTNAG 3 cut(s) 34, 387, 695
BstF5I GGATG 3 cut(s) 508, 565, 724
BstFNI CGCG 1 cut(s) 517
BstH2I RGCGCY 1 cut(s) 50
BstHHI GCGC 4 cut(s) 49, 283, 466, 517
BstKTI GATC 2 cut(s) 443, 651
BstMAI GTCTC 3 cut(s) 23, 394, 416
BstMBI GATC 2 cut(s) 440, 648
BstMWI GCNNNNNNNGC 7 cut(s) 208, 252, 256, 461, 521, 790, 818
BstNI CCWGG 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 885
BstUI CGCG 1 cut(s) 517
BstV1I GCAGC 4 cut(s) 552, 606, 649, 808
BstV2I GAAGAC 1 cut(s) 614
Bsu36I CCTNAGG 1 cut(s) 695
BsuRI GGCC 3 cut(s) 86, 234, 784
BtsCI GGATG 3 cut(s) 508, 565, 724
BtsI GCAGTG 1 cut(s) 744
BtsIMutI CAGTG 2 cut(s) 366, 744
BveI ACCTGC 1 cut(s) 516
Cac8I GCNNGC 5 cut(s) 248, 257, 261, 462, 513
CfoI GCGC 4 cut(s) 49, 283, 466, 517
Cfr10I RCCGGY 2 cut(s) 352, 460
Cfr13I GGNCC 5 cut(s) 85, 172, 232, 782, 833
CpoI CGGWCCG 1 cut(s) 172
CseI GACGC 1 cut(s) 217
Csp6I GTAC 1 cut(s) 637
CspCI CAANNNNNGTGG 4 cut(s) 336, 371, 559, 594
CspI CGGWCCG 1 cut(s) 172
CviAII CATG 3 cut(s) 467, 542, 755
CviQI GTAC 1 cut(s) 637
DdeI CTNAG 3 cut(s) 34, 387, 695
DpnI GATC 2 cut(s) 442, 650
DpnII GATC 2 cut(s) 440, 648
DraI TTTAAA 1 cut(s) 60
DrdI GACNNNNNNGTC 1 cut(s) 408
DriI GACNNNNNGTC 1 cut(s) 213
DseDI GACNNNNNNGTC 1 cut(s) 408
Eam1104I CTCTTC 2 cut(s) 426, 639
Eam1105I GACNNNNNGTC 1 cut(s) 213
EarI CTCTTC 2 cut(s) 426, 639
Eco31I GGTCTC 1 cut(s) 23
Eco47I GGWCC 2 cut(s) 172, 833
Eco57I CTGAAG 1 cut(s) 663
Eco81I CCTNAGG 1 cut(s) 695
EcoO109I RGGNCCY 1 cut(s) 782
EcoRII CCWGG 1 cut(s) 182
FaeI CATG 3 cut(s) 470, 545, 758
FaqI GGGAC 2 cut(s) 329, 494
FatI CATG 3 cut(s) 466, 541, 754
FauI CCCGC 3 cut(s) 187, 607, 658
Fnu4HI GCNGC 5 cut(s) 45, 566, 620, 663, 822
FokI GGATG 3 cut(s) 515, 572, 731
Fsp4HI GCNGC 5 cut(s) 45, 566, 620, 663, 822
FspBI CTAG 1 cut(s) 327
GlaI GCGC 4 cut(s) 48, 282, 465, 516
GluI GCNGC 5 cut(s) 45, 566, 620, 663, 822
GsaI CCCAGC 2 cut(s) 233, 298
GsuI CTGGAG 1 cut(s) 644
HaeII RGCGCY 1 cut(s) 50
HaeIII GGCC 3 cut(s) 86, 234, 784
HapII CCGG 3 cut(s) 170, 353, 461
HgaI GACGC 1 cut(s) 217
HhaI GCGC 4 cut(s) 49, 283, 466, 517
Hin1I GRCGYC 1 cut(s) 209
Hin1II CATG 3 cut(s) 470, 545, 758
Hin6I GCGC 4 cut(s) 47, 281, 464, 515
HinP1I GCGC 4 cut(s) 47, 281, 464, 515
HinfI GANTC 3 cut(s) 90, 214, 482
HpaII CCGG 3 cut(s) 170, 353, 461
HphI GGTGA 3 cut(s) 181, 217, 611
Hpy166II GTNNAC 1 cut(s) 637
Hpy188I TCNGA 3 cut(s) 53, 219, 502
Hpy188III TCNNGA 3 cut(s) 376, 389, 694
Hpy8I GTNNAC 1 cut(s) 637
HpyAV CCTTC 3 cut(s) 85, 373, 389
HpyCH4III ACNGT 1 cut(s) 886
HpyCH4V TGCA 2 cut(s) 250, 737
HpyF10VI GCNNNNNNNGC 7 cut(s) 208, 252, 256, 461, 521, 790, 818
HpyF3I CTNAG 3 cut(s) 34, 387, 695
Hsp92I GRCGYC 1 cut(s) 209
Hsp92II CATG 3 cut(s) 470, 545, 758
HspAI GCGC 4 cut(s) 47, 281, 464, 515
KroI GCCGGC 1 cut(s) 460
KroNI GCCGGC 1 cut(s) 462
Kzo9I GATC 2 cut(s) 440, 648
LmnI GCTCC 3 cut(s) 7, 54, 529
Lsp1109I GCAGC 4 cut(s) 552, 606, 649, 808
LweI GCATC 2 cut(s) 210, 724
MaeI CTAG 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 205
MalI GATC 2 cut(s) 442, 650
MboI GATC 2 cut(s) 440, 648
MboII GAAGA 5 cut(s) 443, 619, 656, 743, 818
MluCI AATT 1 cut(s) 321
MlyI GAGTC 3 cut(s) 84, 223, 476
MroNI GCCGGC 1 cut(s) 460
MseI TTAA 2 cut(s) 59, 681
MslI CAYNNNNRTG 1 cut(s) 194
MspI CCGG 3 cut(s) 170, 353, 461
MspR9I CCNGG 1 cut(s) 184
MvaI CCWGG 1 cut(s) 184
MvnI CGCG 1 cut(s) 517
MwoI GCNNNNNNNGC 7 cut(s) 208, 252, 256, 461, 521, 790, 818
NaeI GCCGGC 1 cut(s) 462
NdeII GATC 2 cut(s) 440, 648
NgoMIV GCCGGC 1 cut(s) 460
NlaIII CATG 3 cut(s) 470, 545, 758
NlaIV GGNNCC 2 cut(s) 127, 783
NmeAIII GCCGAG 4 cut(s) 72, 237, 260, 464
NmuCI GTSAC 1 cut(s) 205
OliI CACNNNNGTG 1 cut(s) 194
PcsI WCGNNNNNNNCGW 1 cut(s) 578
PdiI GCCGGC 1 cut(s) 462
PkrI GCNGC 5 cut(s) 46, 567, 621, 664, 823
PleI GAGTC 3 cut(s) 84, 222, 476
PpsI GAGTC 3 cut(s) 84, 222, 476
Psp6I CCWGG 1 cut(s) 182
PspFI CCCAGC 2 cut(s) 229, 294
PspGI CCWGG 1 cut(s) 182
PspN4I GGNNCC 2 cut(s) 127, 783
PspPI GGNCC 5 cut(s) 85, 172, 232, 782, 833
RsaI GTAC 1 cut(s) 638
RsaNI GTAC 1 cut(s) 637
RseI CAYNNNNRTG 1 cut(s) 194
Rsr2I CGGWCCG 1 cut(s) 172
RsrII CGGWCCG 1 cut(s) 172
SaqAI TTAA 2 cut(s) 59, 681
SatI GCNGC 5 cut(s) 45, 566, 620, 663, 822
Sau3AI GATC 2 cut(s) 440, 648
Sau96I GGNCC 5 cut(s) 85, 172, 232, 782, 833
SchI GAGTC 3 cut(s) 84, 223, 476
ScrFI CCNGG 1 cut(s) 184
SfaNI GCATC 2 cut(s) 210, 724
SfcI CTRYAG 1 cut(s) 885
SinI GGWCC 2 cut(s) 172, 833
SmiMI CAYNNNNRTG 1 cut(s) 194
Sse9I AATT 1 cut(s) 321
SsiI CCGC 9 cut(s) 44, 66, 175, 180, 240, 517, 524, 614, 665
SspMI CTAG 1 cut(s) 327
StyD4I CCNGG 1 cut(s) 182
TaaI ACNGT 1 cut(s) 886
TaqI TCGA 4 cut(s) 78, 156, 422, 701
TasI AATT 1 cut(s) 321
TauI GCSGC 1 cut(s) 47
Tru1I TTAA 2 cut(s) 59, 681
Tru9I TTAA 2 cut(s) 59, 681
TscAI CASTG 2 cut(s) 373, 744
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 4 cut(s) 565, 619, 662, 821
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 4 cut(s) 17, 260, 771, 861
TspGWI ACGGA 2 cut(s) 138, 302
TspRI CASTG 2 cut(s) 373, 744
VpaK11BI GGWCC 2 cut(s) 172, 833
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.