Rh1AG303000

Protein of unknown function (DUF455)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0011094
Physical Location & Seq
Reverse (-)
53551285 .. 53555238
3954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG303000.1

Sequence Viewer

Length: 759 bp
ATGATGGCTTGTTTATCCCCCTCGATGAAATTCCTGAATGAGATTCGGTGCGTGCAGGTGAAGCTGGTGACGCCGAGTCAGATGCCGAAGCTGGGCCGAGGCGGTACCTTGCAGAGCAGGCAAGCAATGGTTCATAGCTTGGCACACACGGAGAGTTGGGCGATTGACTTGTCTTGGGACATAATTGCGAGGTTTGGTAAGCAAGAGGCAATGCCGGTGGAGTTTTTCACTGATTTTGTGAAGGTGGCTCAGGACGAAGGGAGACATTTCAGTCTCTTGGCTTCGAGGCTGGAAGAGATGGGATCGTTTTATGGGGCTTTGCCGGCGCATGACGGGTTATGGGACTCGGCGACTGCTACTTCGGATGACTTGCTGGCGCGGTTGGCGGTGGAGCATTGTGTCCATGAGGCGAGAGGAATGGATGTACTGCCCACGACCATTGCGAGGTTTCGCAATGGGGGTGATGAGAAGACGGCTGGGCTGCTGGAGAGCGTGGTGTACCCTGAAGAAATCACGCATTGTGCTGCGGGAGTGAAATGGTTTAAGTATGTTTTCCTGAGGTCGATGGGAAAAGGTTTGGATGGAAATGAGGAAGATGCAGTGATTGAGAAGTTCCATGAAGTTGTGAGGAAGCATTTTAGGGGGCCTTTGAAGCCTCCTTTCAACGAAGAAGCGAGGAAAGCTGCTGGATTTGGTCCTCAATGGTATGAACCTCTTGCTGTCAAAGAGAGCAAGACTACTACTACTATAGCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF455

Protein Analysis

252

Amino Acids

28.12

Weight (kDa)

6.15

Isoelectric Point (pI)

43.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF455 PF04305 18 - 237 3.5e-83 Protein of unknown function (DUF455)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04520
fragaria_vesca FvH4_7g18310 FvH4_7g18310 FvH4_7g18310 FvH4_7g18310
malus_domestica MD01G1099600.v1.1
prunus_persica Prupe.2G205100_v2.0.a1
pyrus_communis pycom01g12670
rosa_chinensis RchiOBHm_Chr1g0362011
rosa_laevigata RLG00000027680
rosa_multiflora Rmu_co8465241.1_g000001 Rmu_sc0010614.1_g000009
rosa_roxburghii Rroxscaffold_4G00294590
rosa_rugosa Rorug01G0292500 Rorug01G0292600
rosa_samantha Rh1AG303000 Rh1BG266200 Rh1CG284400 Rh1DG296200
rosa_wichuraiana Rw1G026980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 46
AasI GACNNNNNNGTC 1 cut(s) 270
Acc36I ACCTGC 1 cut(s) 46
Acc65I GGTACC 1 cut(s) 104
AccB1I GGYRCC 1 cut(s) 104
AccII CGCG 1 cut(s) 379
AciI CCGC 4 cut(s) 102, 379, 386, 527
AclWI GGATC 1 cut(s) 310
AcsI RAATTY 1 cut(s) 29
AcuI CTGAAG 1 cut(s) 525
AcyI GRCGYC 1 cut(s) 71
AfaI GTAC 3 cut(s) 106, 426, 500
AfiI CCNNNNNNNGG 2 cut(s) 92, 444
AgsI TTSAA 2 cut(s) 652, 664
AhdI GACNNNNNGTC 1 cut(s) 75
AluBI AGCT 4 cut(s) 64, 91, 138, 683
AluI AGCT 4 cut(s) 64, 91, 138, 683
Alw26I GTCTC 2 cut(s) 256, 278
AlwI GGATC 1 cut(s) 310
AoxI GGCC 2 cut(s) 94, 644
ApeKI GCWGC 3 cut(s) 481, 524, 683
ApoI RAATTY 1 cut(s) 29
ArsI GACNNNNNNTTYG 2 cut(s) 343, 375
Asp718I GGTACC 1 cut(s) 104
AspLEI GCGC 2 cut(s) 328, 379
AspS9I GGNCC 3 cut(s) 94, 644, 695
AsuHPI GGTGA 3 cut(s) 70, 79, 473
AvaII GGWCC 1 cut(s) 695
AxyI CCTNAGG 1 cut(s) 557
BanI GGYRCC 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 476
BbvI GCAGC 3 cut(s) 468, 511, 670
BccI CCATC 3 cut(s) 292, 559, 575
BceAI ACGGC 1 cut(s) 489
BcgI CGANNNNNNTGC 2 cut(s) 64, 98
BcoDI GTCTC 2 cut(s) 256, 278
BfmI CTRYAG 1 cut(s) 747
BfuAI ACCTGC 1 cut(s) 46
BisI GCNGC 3 cut(s) 482, 525, 684
BlsI GCNGC 3 cut(s) 483, 526, 685
Bme18I GGWCC 1 cut(s) 695
BmeRI GACNNNNNGTC 1 cut(s) 75
BmgT120I GGNCC 3 cut(s) 94, 644, 695
BmiI GGNNCC 2 cut(s) 106, 645
BmsI GCATC 2 cut(s) 72, 586
BpiI GAAGAC 1 cut(s) 476
BpmI CTGGAG 1 cut(s) 506
Bpu10I CCTNAGC 1 cut(s) 249
BsaHI GRCGYC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 97
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 444
Bse118I RCCGGY 2 cut(s) 214, 322
Bse21I CCTNAGG 1 cut(s) 557
Bse3DI GCAATG 4 cut(s) 132, 216, 438, 460
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 3 cut(s) 370, 427, 586
BseLI CCNNNNNNNGG 2 cut(s) 92, 444
BseMI GCAATG 4 cut(s) 132, 216, 438, 460
BseMII CTCAG 2 cut(s) 263, 548
BseXI GCAGC 3 cut(s) 468, 511, 670
BseYI CCCAGC 2 cut(s) 91, 476
BsgI GTGCAG 1 cut(s) 74
Bsh1236I CGCG 1 cut(s) 379
BshFI GGCC 2 cut(s) 96, 646
BshNI GGYRCC 1 cut(s) 104
BsiSI CCGG 2 cut(s) 215, 323
BslFI GGGAC 2 cut(s) 191, 356
BslI CCNNNNNNNGG 2 cut(s) 92, 444
BsmAI GTCTC 2 cut(s) 256, 278
BsmFI GGGAC 2 cut(s) 191, 356
BsnI GGCC 2 cut(s) 96, 646
Bsp143I GATC 1 cut(s) 302
BspACI CCGC 4 cut(s) 102, 379, 386, 527
BspANI GGCC 2 cut(s) 96, 646
BspCNI CTCAG 2 cut(s) 262, 549
BspFNI CGCG 1 cut(s) 379
BspLI GGNNCC 2 cut(s) 106, 645
BspMI ACCTGC 1 cut(s) 46
BspPI GGATC 1 cut(s) 310
BspT107I GGYRCC 1 cut(s) 104
BsrDI GCAATG 4 cut(s) 132, 216, 438, 460
BsrFI RCCGGY 2 cut(s) 214, 322
BssAI RCCGGY 2 cut(s) 214, 322
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 1 cut(s) 302
BssNI GRCGYC 1 cut(s) 71
Bst6I CTCTTC 1 cut(s) 288
BstACI GRCGYC 1 cut(s) 71
BstC8I GCNNGC 5 cut(s) 53, 119, 123, 324, 375
BstDEI CTNAG 2 cut(s) 249, 557
BstF5I GGATG 3 cut(s) 370, 427, 586
BstFNI CGCG 1 cut(s) 379
BstHHI GCGC 2 cut(s) 328, 379
BstKTI GATC 1 cut(s) 305
BstMAI GTCTC 2 cut(s) 256, 278
BstMBI GATC 1 cut(s) 302
BstMWI GCNNNNNNNGC 7 cut(s) 61, 70, 118, 323, 383, 652, 680
BstSFI CTRYAG 1 cut(s) 747
BstUI CGCG 1 cut(s) 379
BstV1I GCAGC 3 cut(s) 468, 511, 670
BstV2I GAAGAC 1 cut(s) 476
Bsu36I CCTNAGG 1 cut(s) 557
BsuRI GGCC 2 cut(s) 96, 646
BtsCI GGATG 3 cut(s) 370, 427, 586
BtsI GCAGTG 1 cut(s) 606
BtsIMutI CAGTG 2 cut(s) 228, 606
BveI ACCTGC 1 cut(s) 46
Cac8I GCNNGC 5 cut(s) 53, 119, 123, 324, 375
CfoI GCGC 2 cut(s) 328, 379
Cfr10I RCCGGY 2 cut(s) 214, 322
Cfr13I GGNCC 3 cut(s) 94, 644, 695
CseI GACGC 1 cut(s) 79
Csp6I GTAC 3 cut(s) 105, 425, 499
CspCI CAANNNNNGTGG 4 cut(s) 198, 233, 421, 456
CviAII CATG 3 cut(s) 329, 404, 617
CviQI GTAC 3 cut(s) 105, 425, 499
DdeI CTNAG 2 cut(s) 249, 557
DpnI GATC 1 cut(s) 304
DpnII GATC 1 cut(s) 302
DrdI GACNNNNNNGTC 1 cut(s) 270
DriI GACNNNNNGTC 1 cut(s) 75
DseDI GACNNNNNNGTC 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 288
Eam1105I GACNNNNNGTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 695
Eco57I CTGAAG 1 cut(s) 525
Eco81I CCTNAGG 1 cut(s) 557
EcoO109I RGGNCCY 1 cut(s) 644
FaeI CATG 3 cut(s) 332, 407, 620
FaqI GGGAC 2 cut(s) 191, 356
FatI CATG 3 cut(s) 328, 403, 616
FauI CCCGC 1 cut(s) 520
Fnu4HI GCNGC 3 cut(s) 482, 525, 684
FokI GGATG 3 cut(s) 377, 434, 593
Fsp4HI GCNGC 3 cut(s) 482, 525, 684
GlaI GCGC 2 cut(s) 327, 378
GluI GCNGC 3 cut(s) 482, 525, 684
GsaI CCCAGC 2 cut(s) 95, 480
GsuI CTGGAG 1 cut(s) 506
HaeIII GGCC 2 cut(s) 96, 646
HapII CCGG 2 cut(s) 215, 323
HgaI GACGC 1 cut(s) 79
HhaI GCGC 2 cut(s) 328, 379
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 3 cut(s) 332, 407, 620
Hin6I GCGC 2 cut(s) 326, 377
HinP1I GCGC 2 cut(s) 326, 377
HinfI GANTC 3 cut(s) 43, 76, 344
HpaII CCGG 2 cut(s) 215, 323
HphI GGTGA 3 cut(s) 70, 79, 473
Hpy166II GTNNAC 1 cut(s) 499
Hpy188I TCNGA 2 cut(s) 81, 364
Hpy188III TCNNGA 3 cut(s) 34, 251, 556
Hpy8I GTNNAC 1 cut(s) 499
HpyAV CCTTC 2 cut(s) 235, 251
HpyCH4V TGCA 3 cut(s) 55, 112, 599
HpyF10VI GCNNNNNNNGC 7 cut(s) 61, 70, 118, 323, 383, 652, 680
HpyF3I CTNAG 2 cut(s) 249, 557
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 3 cut(s) 332, 407, 620
HspAI GCGC 2 cut(s) 326, 377
KpnI GGTACC 1 cut(s) 108
KroI GCCGGC 1 cut(s) 322
KroNI GCCGGC 1 cut(s) 324
Kzo9I GATC 1 cut(s) 302
LmnI GCTCC 1 cut(s) 391
Lsp1109I GCAGC 3 cut(s) 468, 511, 670
LweI GCATC 2 cut(s) 72, 586
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 304
MboI GATC 1 cut(s) 302
MboII GAAGA 5 cut(s) 305, 481, 518, 605, 680
MluCI AATT 2 cut(s) 29, 183
MlyI GAGTC 2 cut(s) 85, 338
MroNI GCCGGC 1 cut(s) 322
MseI TTAA 1 cut(s) 543
MspI CCGG 2 cut(s) 215, 323
MvnI CGCG 1 cut(s) 379
MwoI GCNNNNNNNGC 7 cut(s) 61, 70, 118, 323, 383, 652, 680
NaeI GCCGGC 1 cut(s) 324
NdeII GATC 1 cut(s) 302
NgoMIV GCCGGC 1 cut(s) 322
NlaIII CATG 3 cut(s) 332, 407, 620
NlaIV GGNNCC 2 cut(s) 106, 645
NmeAIII GCCGAG 3 cut(s) 99, 122, 326
NmuCI GTSAC 1 cut(s) 67
PaqCI CACCTGC 1 cut(s) 46
PcsI WCGNNNNNNNCGW 1 cut(s) 440
PdiI GCCGGC 1 cut(s) 324
PfeI GAWTC 1 cut(s) 43
PkrI GCNGC 3 cut(s) 483, 526, 685
PleI GAGTC 2 cut(s) 84, 338
PpsI GAGTC 2 cut(s) 84, 338
PspFI CCCAGC 2 cut(s) 91, 476
PspN4I GGNNCC 2 cut(s) 106, 645
PspPI GGNCC 3 cut(s) 94, 644, 695
RsaI GTAC 3 cut(s) 106, 426, 500
RsaNI GTAC 3 cut(s) 105, 425, 499
SaqAI TTAA 1 cut(s) 543
SatI GCNGC 3 cut(s) 482, 525, 684
Sau3AI GATC 1 cut(s) 302
Sau96I GGNCC 3 cut(s) 94, 644, 695
SchI GAGTC 2 cut(s) 85, 338
SfaNI GCATC 2 cut(s) 72, 586
SfcI CTRYAG 1 cut(s) 747
SinI GGWCC 1 cut(s) 695
Sse9I AATT 2 cut(s) 29, 183
SsiI CCGC 4 cut(s) 102, 379, 386, 527
TaqI TCGA 3 cut(s) 23, 284, 563
TasI AATT 2 cut(s) 29, 183
TatI WGTACW 1 cut(s) 424
TfiI GAWTC 1 cut(s) 43
Tru1I TTAA 1 cut(s) 543
Tru9I TTAA 1 cut(s) 543
TscAI CASTG 2 cut(s) 235, 606
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 3 cut(s) 481, 524, 683
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 4 cut(s) 41, 122, 633, 723
TspGWI ACGGA 1 cut(s) 164
TspRI CASTG 2 cut(s) 235, 606
VpaK11BI GGWCC 1 cut(s) 695
XapI RAATTY 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.