RLG00000027680

Protein of unknown function (DUF455)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0011094
Physical Location & Seq
Forward (+)
13865766 .. 13867123
1358 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027680

Sequence Viewer

Length: 678 bp
ATGCCAAAACTCGGCAGAGGCGGTAGCTTGCAGAGCAGGCAAGCAATGGTTCATAGCTTGGCGCACACGGAGAGTTGGGCGATTGACTTGTCTTGGGACATAATTGCTAGGTTTGGTAAGCAAGAGGCAATGCCGGTGGAGTTTTTCACTGATTTTGTGAAGGTGGCTCAGGACGAAGGGAGACATTTCAGTCTCTTGGCATCGAGGCTGGAAGAAATGGGATCGTTCTATGGGGCTTTGCCGGCGCATGATGGGTTATGGGACTCGGCGACTGCTACTTCGGATGACTTGCTGGCGCGGTTGGCGGTGGAGCATTGTGTCCATGAGGCGAGAGGAATGGATGTGCTGCCCACGACCATTGCGAGGTTTCGCAATGGGGGTGATGAGAAGACGGCGGGGCTGCTGGAGAGCGTGGTGTACCCTGAAGAGATCACGCATTGTGCTGCGGGAGTGAAATGGTTTAAGTATGTTTTCCTGAGGTCGATGGGAAAAGGTTTGGATGGAAATGAGGAAGATGCAGTGATTGAGAAGTTCCATGAAGTTGTGAGGAAGCATTTTAGGGGGCCTTTGAAGCCTCCTTTCAACGAAGAAGCGAGGAAAGCTGCTGGATTTGGTCCTCAATGGTATGAACCTCTTGCTGTCAAAGAGAGCAAGACTACTACTACTATAGCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF455

Protein Analysis

226

Amino Acids

25.07

Weight (kDa)

5.86

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF455 PF04305 1 - 210 9.1e-80 Protein of unknown function (DUF455)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04520
fragaria_vesca FvH4_7g18310 FvH4_7g18310 FvH4_7g18310 FvH4_7g18310
malus_domestica MD01G1099600.v1.1
prunus_persica Prupe.2G205100_v2.0.a1
pyrus_communis pycom01g12670
rosa_chinensis RchiOBHm_Chr1g0362011
rosa_laevigata RLG00000027680
rosa_multiflora Rmu_co8465241.1_g000001 Rmu_sc0010614.1_g000009
rosa_roxburghii Rroxscaffold_4G00294590
rosa_rugosa Rorug01G0292500 Rorug01G0292600
rosa_samantha Rh1AG303000 Rh1BG266200 Rh1CG284400 Rh1DG296200
rosa_wichuraiana Rw1G026980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 189
AccII CGCG 1 cut(s) 298
AciI CCGC 5 cut(s) 21, 298, 305, 395, 446
AclWI GGATC 1 cut(s) 229
AcuI CTGAAG 1 cut(s) 444
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 2 cut(s) 11, 363
AgsI TTSAA 2 cut(s) 571, 583
AluBI AGCT 3 cut(s) 27, 57, 602
AluI AGCT 3 cut(s) 27, 57, 602
Alw26I GTCTC 2 cut(s) 175, 197
AlwI GGATC 1 cut(s) 229
AoxI GGCC 1 cut(s) 563
ApeKI GCWGC 4 cut(s) 346, 400, 443, 602
ArsI GACNNNNNNTTYG 2 cut(s) 262, 294
AspLEI GCGC 3 cut(s) 64, 247, 298
AspS9I GGNCC 2 cut(s) 563, 614
AsuHPI GGTGA 1 cut(s) 392
AvaII GGWCC 1 cut(s) 614
AxyI CCTNAGG 1 cut(s) 476
BbsI GAAGAC 1 cut(s) 395
BbvI GCAGC 4 cut(s) 333, 387, 430, 589
BccI CCATC 3 cut(s) 245, 478, 494
BceAI ACGGC 1 cut(s) 408
BcoDI GTCTC 2 cut(s) 175, 197
BfaI CTAG 1 cut(s) 108
BfmI CTRYAG 1 cut(s) 666
BisI GCNGC 4 cut(s) 347, 401, 444, 603
BlsI GCNGC 4 cut(s) 348, 402, 445, 604
Bme18I GGWCC 1 cut(s) 614
BmgT120I GGNCC 2 cut(s) 563, 614
BmiI GGNNCC 1 cut(s) 564
BmsI GCATC 2 cut(s) 209, 505
BpiI GAAGAC 1 cut(s) 395
BpmI CTGGAG 1 cut(s) 425
Bpu10I CCTNAGC 1 cut(s) 168
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 363
Bse118I RCCGGY 2 cut(s) 133, 241
Bse21I CCTNAGG 1 cut(s) 476
Bse3DI GCAATG 4 cut(s) 51, 135, 357, 379
BseGI GGATG 3 cut(s) 289, 346, 505
BseLI CCNNNNNNNGG 2 cut(s) 11, 363
BseMI GCAATG 4 cut(s) 51, 135, 357, 379
BseMII CTCAG 2 cut(s) 182, 467
BseXI GCAGC 4 cut(s) 333, 387, 430, 589
Bsh1236I CGCG 1 cut(s) 298
BshFI GGCC 1 cut(s) 565
BsiSI CCGG 2 cut(s) 134, 242
BslFI GGGAC 2 cut(s) 110, 275
BslI CCNNNNNNNGG 2 cut(s) 11, 363
BsmAI GTCTC 2 cut(s) 175, 197
BsmFI GGGAC 2 cut(s) 110, 275
BsnI GGCC 1 cut(s) 565
Bsp143I GATC 2 cut(s) 221, 429
BspACI CCGC 5 cut(s) 21, 298, 305, 395, 446
BspANI GGCC 1 cut(s) 565
BspCNI CTCAG 2 cut(s) 181, 468
BspFNI CGCG 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 564
BspPI GGATC 1 cut(s) 229
BsrDI GCAATG 4 cut(s) 51, 135, 357, 379
BsrFI RCCGGY 2 cut(s) 133, 241
BssAI RCCGGY 2 cut(s) 133, 241
BssMI GATC 2 cut(s) 221, 429
Bst6I CTCTTC 1 cut(s) 420
BstC8I GCNNGC 5 cut(s) 29, 38, 42, 243, 294
BstDEI CTNAG 2 cut(s) 168, 476
BstF5I GGATG 3 cut(s) 289, 346, 505
BstFNI CGCG 1 cut(s) 298
BstHHI GCGC 3 cut(s) 64, 247, 298
BstKTI GATC 2 cut(s) 224, 432
BstMAI GTCTC 2 cut(s) 175, 197
BstMBI GATC 2 cut(s) 221, 429
BstMWI GCNNNNNNNGC 6 cut(s) 33, 37, 242, 302, 571, 599
BstSFI CTRYAG 1 cut(s) 666
BstUI CGCG 1 cut(s) 298
BstV1I GCAGC 4 cut(s) 333, 387, 430, 589
BstV2I GAAGAC 1 cut(s) 395
Bsu36I CCTNAGG 1 cut(s) 476
BsuRI GGCC 1 cut(s) 565
BtsCI GGATG 3 cut(s) 289, 346, 505
BtsI GCAGTG 1 cut(s) 525
BtsIMutI CAGTG 2 cut(s) 147, 525
Cac8I GCNNGC 5 cut(s) 29, 38, 42, 243, 294
CfoI GCGC 3 cut(s) 64, 247, 298
Cfr10I RCCGGY 2 cut(s) 133, 241
Cfr13I GGNCC 2 cut(s) 563, 614
Csp6I GTAC 1 cut(s) 418
CspCI CAANNNNNGTGG 4 cut(s) 117, 152, 340, 375
CviAII CATG 3 cut(s) 248, 323, 536
CviJI RGCY 9 cut(s) 27, 57, 167, 208, 236, 400, 565, 574, 602
CviKI_1 RGCY 9 cut(s) 27, 57, 167, 208, 236, 400, 565, 574, 602
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 2 cut(s) 168, 476
DpnI GATC 2 cut(s) 223, 431
DpnII GATC 2 cut(s) 221, 429
DrdI GACNNNNNNGTC 1 cut(s) 189
DseDI GACNNNNNNGTC 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 420
EarI CTCTTC 1 cut(s) 420
Eco47I GGWCC 1 cut(s) 614
Eco57I CTGAAG 1 cut(s) 444
Eco81I CCTNAGG 1 cut(s) 476
EcoO109I RGGNCCY 1 cut(s) 563
FaeI CATG 3 cut(s) 251, 326, 539
FaqI GGGAC 2 cut(s) 110, 275
FatI CATG 3 cut(s) 247, 322, 535
FauI CCCGC 2 cut(s) 388, 439
Fnu4HI GCNGC 4 cut(s) 347, 401, 444, 603
FokI GGATG 3 cut(s) 296, 353, 512
Fsp4HI GCNGC 4 cut(s) 347, 401, 444, 603
FspBI CTAG 1 cut(s) 108
GlaI GCGC 3 cut(s) 63, 246, 297
GluI GCNGC 4 cut(s) 347, 401, 444, 603
GsuI CTGGAG 1 cut(s) 425
HaeIII GGCC 1 cut(s) 565
HapII CCGG 2 cut(s) 134, 242
HhaI GCGC 3 cut(s) 64, 247, 298
Hin1II CATG 3 cut(s) 251, 326, 539
Hin6I GCGC 3 cut(s) 62, 245, 296
HinP1I GCGC 3 cut(s) 62, 245, 296
HinfI GANTC 1 cut(s) 263
HpaII CCGG 2 cut(s) 134, 242
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 2 cut(s) 170, 475
Hpy8I GTNNAC 1 cut(s) 418
HpyAV CCTTC 2 cut(s) 154, 170
HpyCH4V TGCA 2 cut(s) 31, 518
HpyF10VI GCNNNNNNNGC 6 cut(s) 33, 37, 242, 302, 571, 599
HpyF3I CTNAG 2 cut(s) 168, 476
Hsp92II CATG 3 cut(s) 251, 326, 539
HspAI GCGC 3 cut(s) 62, 245, 296
KroI GCCGGC 1 cut(s) 241
KroNI GCCGGC 1 cut(s) 243
Kzo9I GATC 2 cut(s) 221, 429
LmnI GCTCC 1 cut(s) 310
Lsp1109I GCAGC 4 cut(s) 333, 387, 430, 589
LweI GCATC 2 cut(s) 209, 505
MaeI CTAG 1 cut(s) 108
MalI GATC 2 cut(s) 223, 431
MboI GATC 2 cut(s) 221, 429
MboII GAAGA 5 cut(s) 224, 400, 437, 524, 599
MluCI AATT 1 cut(s) 102
MlyI GAGTC 1 cut(s) 257
MroNI GCCGGC 1 cut(s) 241
MseI TTAA 1 cut(s) 462
MspI CCGG 2 cut(s) 134, 242
MvnI CGCG 1 cut(s) 298
MwoI GCNNNNNNNGC 6 cut(s) 33, 37, 242, 302, 571, 599
NaeI GCCGGC 1 cut(s) 243
NdeII GATC 2 cut(s) 221, 429
NgoMIV GCCGGC 1 cut(s) 241
NlaIII CATG 3 cut(s) 251, 326, 539
NlaIV GGNNCC 1 cut(s) 564
NmeAIII GCCGAG 1 cut(s) 245
PcsI WCGNNNNNNNCGW 1 cut(s) 359
PdiI GCCGGC 1 cut(s) 243
PkrI GCNGC 4 cut(s) 348, 402, 445, 604
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 564
PspPI GGNCC 2 cut(s) 563, 614
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 4 cut(s) 347, 401, 444, 603
Sau3AI GATC 2 cut(s) 221, 429
Sau96I GGNCC 2 cut(s) 563, 614
SchI GAGTC 1 cut(s) 257
SetI ASST 9 cut(s) 29, 59, 113, 165, 368, 482, 496, 604, 634
SfaNI GCATC 2 cut(s) 209, 505
SfcI CTRYAG 1 cut(s) 666
SinI GGWCC 1 cut(s) 614
Sse9I AATT 1 cut(s) 102
SsiI CCGC 5 cut(s) 21, 298, 305, 395, 446
SspMI CTAG 1 cut(s) 108
TaqI TCGA 2 cut(s) 203, 482
TasI AATT 1 cut(s) 102
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TscAI CASTG 2 cut(s) 154, 525
TseI GCWGC 4 cut(s) 346, 400, 443, 602
TspDTI ATGAA 3 cut(s) 41, 552, 642
TspGWI ACGGA 1 cut(s) 83
TspRI CASTG 2 cut(s) 154, 525
VpaK11BI GGWCC 1 cut(s) 614
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.