Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005498

Physical Location & Seq

Genomic Coordinates Reverse (-)

15742522 .. 15746971

Gene Structure 4450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g18921.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGTTATACGATCACATGGCAAAGTGGAACCTTGATCAGGATGTTGTTCGTTGGGGACTGCATCAGCTGTTGGATTGCACTCTTTCTAACGATTGTTCTCGGAGTACTGTTACTGGATACCAATGGGACACTAGTCAAGTGGAGTGTGTAAACGAAGGCTATGTTGAGCCTTGTAGCGTGGAGAATGATGAGGTTTTGGCTCGTGCGTTACAGGAAGAGCTATCTAGACTTGCAAAGGACGAGGCTGCGGGAGTCTCTGGTTATGGGGATGAGCCTTTGCAGGCATCGATTCTTGCACAGGATTGGCTCGGTCCATCAGGCAGACACAGTGGTGCTGGGCTTGAAAATGTTCAGGATGCAGTGAATGATTTTGGCAGGAAGATGGACACCAATGATTATCAAAATCAGGAATATGAAGGGGATGGTTCTAGGAGATATGGAAACGGGGAAGCATATGAAAATAATGAAGGAGAGTACTCGATGAATGGGGAAGACTTGTTGCATCCGATGGATATAACAGATGAGTATGCTCTTGATGGTGAAGTAGGGAGAAGACTGAATCAGATGGTTCCAGTTCCTCATATTCCTAAAACAAATGAGAAGATACCCACAGTTGATGAAGAGATATCAGATCATCAGAGGCTTATTGAAAGACTGAAGTTATATGACTTGGTGGAGTGTAAGATCCAGGGAGATGGGAACTGTCAGTTTCGTGCTTTATCAGATCAACTATATCGTTCTTCTGAATACCATGGCCTTGTAAGAGATCAAATTATTCAACAGCTCAAGACTCATCCAGAATTGTATGACGGTTATGTTCCGATGGGTTATGTTGATTACTTAAAGAAAATGAGCAAGTGTGGTGAATGGGGCGATCATGTCACGTTGCAGGCTGCTGCAGATTCGTATGGTGTCAAGATATTTGTTATCACTTCATTCAAGGATACATGCTACATTGAGATCCTTCCACATGTTTCAAAGTCGAGTAGAGTTATTTGCTTGAGCTTTTGGGCTGAGGTGCACTACAATTCTATCTATCCTGAAGGAGAACTTCCTCCGCCCAGCTTAAAGAAAAAGAAGCATTGGTGGAACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

366

Amino Acids

41.64

Weight (kDa)

4.74

Isoelectric Point (pI)

39.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04250 AT5G04250
fragaria_vesca	FvH4_7g18921 FvH4_7g18921 FvH4_7g18921 FvH4_7g18921 FvH4_7g18921 FvH4_7g18921
malus_domestica	MD01G1105100.v1.1 MD07G1171600.v1.1
prunus_persica	Prupe.2G210400_v2.0.a1 Prupe.2G210400_v2.0.a1
pyrus_communis	pycom01g13160 pycom07g16570
rosa_chinensis	RchiOBHm_Chr1g0362861
rosa_laevigata	RLG00000027616
rosa_multiflora	Rmu_co8397651.1_g000001 Rmu_sc0001502.1_g000014
rosa_roxburghii	Rroxscaffold_4G00293700
rosa_rugosa	Rorug01G0302000.1 Rorug01G0302100 Rorug01G0302100 Rorug01G0302100 Rorug01G0302100
rosa_samantha	Rh1AG310900 Rh1BG274000 Rh1CG291200 Rh1DG304800
rosa_wichuraiana	Rw1G027560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	248, 1058
AclWI	GGATC	2 cut(s)	679, 955
AcuI	CTGAAG	2 cut(s)	677, 1062
AfaI	GTAC	2 cut(s)	106, 476
AfiI	CCNNNNNNNGG	1 cut(s)	37
AflIII	ACRYGT	1 cut(s)	970
AgsI	TTSAA	5 cut(s)	344, 650, 779, 940, 978
AhlI	ACTAGT	1 cut(s)	131
AjnI	CCWGG	1 cut(s)	687
AleI	CACNNNNGTG	1 cut(s)	330
AluBI	AGCT	5 cut(s)	67, 220, 784, 1005, 1065
AluI	AGCT	5 cut(s)	67, 220, 784, 1005, 1065
Alw21I	GWGCWC	1 cut(s)	1023
Alw26I	GTCTC	1 cut(s)	259
Alw44I	GTGCAC	1 cut(s)	1019
AlwI	GGATC	2 cut(s)	679, 955
AoxI	GGCC	1 cut(s)	754
ApaLI	GTGCAC	1 cut(s)	1019
ApeKI	GCWGC	3 cut(s)	245, 893, 896
Asp700I	GAANNNNTTC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	2 cut(s)	551, 875
AvaII	GGWCC	1 cut(s)	311
BaeGI	GKGCMC	1 cut(s)	1023
BauI	CACGAG	1 cut(s)	201
BbsI	GAAGAC	2 cut(s)	498, 559
Bbv12I	GWGCWC	1 cut(s)	1023
BbvCI	CCTCAGC	1 cut(s)	1014
BbvI	GCAGC	3 cut(s)	232, 880, 883
BccI	CCATC	8 cut(s)	322, 376, 416, 502, 530, 559, 689, 817
BciT130I	CCWGG	1 cut(s)	689
BciVI	GTATCC	2 cut(s)	110, 937
BclI	TGATCA	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	259
BcuI	ACTAGT	1 cut(s)	131
BfaI	CTAG	3 cut(s)	132, 225, 429
BfmI	CTRYAG	1 cut(s)	897
BfuI	GTATCC	2 cut(s)	110, 937
BisI	GCNGC	3 cut(s)	246, 894, 897
BlsI	GCNGC	3 cut(s)	247, 895, 898
BmcAI	AGTACT	2 cut(s)	106, 476
Bme1390I	CCNGG	1 cut(s)	689
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	311
BmiI	GGNNCC	2 cut(s)	29, 570
BmrFI	CCNGG	1 cut(s)	689
BmsI	GCATC	4 cut(s)	70, 293, 346, 511
BoxI	GACNNNNGTC	1 cut(s)	132
BpiI	GAAGAC	2 cut(s)	498, 559
Bpu10I	CCTNAGC	1 cut(s)	1014
BpuEI	CTTGAG	2 cut(s)	770, 1021
Bsa29I	ATCGAT	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	688, 751
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse1I	ACTGG	2 cut(s)	118, 572
BseBI	CCWGG	1 cut(s)	689
BseCI	ATCGAT	1 cut(s)	287
BseDI	CCNNGG	2 cut(s)	688, 751
BseGI	GGATG	6 cut(s)	46, 274, 361, 427, 502, 793
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	1005
BseNI	ACTGG	2 cut(s)	118, 572
BseSI	GKGCMC	1 cut(s)	1023
BseXI	GCAGC	3 cut(s)	232, 880, 883
BseYI	CCCAGC	2 cut(s)	335, 1061
BshFI	GGCC	1 cut(s)	756
BshVI	ATCGAT	1 cut(s)	287
BsiHKAI	GWGCWC	1 cut(s)	1023
BslFI	GGGAC	2 cut(s)	69, 140
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	259
BsmFI	GGGAC	2 cut(s)	69, 140
BsnI	GGCC	1 cut(s)	756
Bsp1286I	GDGCHC	1 cut(s)	1023
Bsp143I	GATC	8 cut(s)	10, 34, 631, 684, 724, 766, 874, 960
Bsp19I	CCATGG	1 cut(s)	751
BspACI	CCGC	2 cut(s)	248, 1058
BspANI	GGCC	1 cut(s)	756
BspCNI	CTCAG	1 cut(s)	1006
BspDI	ATCGAT	1 cut(s)	287
BspLI	GGNNCC	2 cut(s)	29, 570
BspMAI	CTGCAG	1 cut(s)	901
BspPI	GGATC	2 cut(s)	679, 955
BspQI	GCTCTTC	1 cut(s)	210
BsrI	ACTGG	2 cut(s)	118, 572
BssECI	CCNNGG	2 cut(s)	688, 751
BssMI	GATC	8 cut(s)	10, 34, 631, 684, 724, 766, 874, 960
BssSI	CACGAG	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	751
Bst2BI	CACGAG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	689
Bst4CI	ACNGT	5 cut(s)	109, 329, 613, 704, 812
Bst6I	CTCTTC	2 cut(s)	210, 615
BstC8I	GCNNGC	2 cut(s)	282, 891
BstDEI	CTNAG	1 cut(s)	1014
BstDSI	CCRYGG	1 cut(s)	751
BstENI	CCTNNNNNAGG	1 cut(s)	35
BstF5I	GGATG	6 cut(s)	46, 274, 361, 427, 502, 793
BstKTI	GATC	8 cut(s)	13, 37, 634, 687, 727, 769, 877, 963
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	8 cut(s)	10, 34, 631, 684, 724, 766, 874, 960
BstNI	CCWGG	1 cut(s)	689
BstNSI	RCATGY	2 cut(s)	951, 974
BstPAI	GACNNNNGTC	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	687
BstSFI	CTRYAG	1 cut(s)	897
BstSLI	GKGCMC	1 cut(s)	1023
BstV1I	GCAGC	3 cut(s)	232, 880, 883
BstV2I	GAAGAC	2 cut(s)	498, 559
BstX2I	RGATCY	2 cut(s)	684, 960
BstXI	CCANNNNNNTGG	1 cut(s)	695
BstYI	RGATCY	2 cut(s)	684, 960
Bsu15I	ATCGAT	1 cut(s)	287
BsuI	GTATCC	2 cut(s)	110, 937
BsuRI	GGCC	1 cut(s)	756
BsuTUI	ATCGAT	1 cut(s)	287
BtgI	CCRYGG	1 cut(s)	751
BtsCI	GGATG	6 cut(s)	46, 274, 361, 427, 502, 793
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	2 cut(s)	334, 366
Cac8I	GCNNGC	2 cut(s)	282, 891
Cfr13I	GGNCC	1 cut(s)	311
ClaI	ATCGAT	1 cut(s)	287
Csp6I	GTAC	2 cut(s)	105, 475
CviAII	CATG	5 cut(s)	16, 752, 878, 948, 971
CviQI	GTAC	2 cut(s)	105, 475
DdeI	CTNAG	1 cut(s)	1014
DpnI	GATC	8 cut(s)	12, 36, 633, 686, 726, 768, 876, 962
DpnII	GATC	8 cut(s)	10, 34, 631, 684, 724, 766, 874, 960
Eam1104I	CTCTTC	2 cut(s)	210, 615
EarI	CTCTTC	2 cut(s)	210, 615
EciI	GGCGGA	1 cut(s)	1047
Eco130I	CCWWGG	1 cut(s)	751
Eco32I	GATATC	1 cut(s)	627
Eco47I	GGWCC	1 cut(s)	311
Eco57I	CTGAAG	2 cut(s)	677, 1062
EcoNI	CCTNNNNNAGG	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	687
EcoRV	GATATC	1 cut(s)	627
EcoT14I	CCWWGG	1 cut(s)	751
ErhI	CCWWGG	1 cut(s)	751
FaeI	CATG	5 cut(s)	19, 755, 881, 951, 974
FalI	AAGNNNNNCTT	2 cut(s)	1035, 1067
FaqI	GGGAC	2 cut(s)	69, 140
FatI	CATG	5 cut(s)	15, 751, 877, 947, 970
FauI	CCCGC	1 cut(s)	241
FauNDI	CATATG	1 cut(s)	454
FbaI	TGATCA	1 cut(s)	34
Fnu4HI	GCNGC	3 cut(s)	246, 894, 897
FokI	GGATG	6 cut(s)	53, 281, 368, 434, 489, 780
Fsp4HI	GCNGC	3 cut(s)	246, 894, 897
FspBI	CTAG	3 cut(s)	132, 225, 429
GluI	GCNGC	3 cut(s)	246, 894, 897
GsaI	CCCAGC	2 cut(s)	339, 1065
HaeIII	GGCC	1 cut(s)	756
Hin1II	CATG	5 cut(s)	19, 755, 881, 951, 974
HinfI	GANTC	5 cut(s)	252, 289, 559, 790, 902
HphI	GGTGA	2 cut(s)	551, 875
Hpy166II	GTNNAC	2 cut(s)	151, 1021
Hpy188I	TCNGA	8 cut(s)	102, 507, 564, 631, 639, 724, 745, 822
Hpy188III	TCNNGA	9 cut(s)	38, 225, 353, 407, 533, 787, 797, 916, 1040
Hpy8I	GTNNAC	2 cut(s)	151, 1021
HpyAV	CCTTC	5 cut(s)	149, 410, 461, 974, 1037
HpyCH4III	ACNGT	5 cut(s)	109, 329, 613, 704, 812
HpyCH4IV	ACGT	1 cut(s)	884
HpyF3I	CTNAG	1 cut(s)	1014
HpySE526I	ACGT	1 cut(s)	884
Hsp92II	CATG	5 cut(s)	19, 755, 881, 951, 974
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	8 cut(s)	10, 34, 631, 684, 724, 766, 874, 960
LguI	GCTCTTC	1 cut(s)	210
Lsp1109I	GCAGC	3 cut(s)	232, 880, 883
LweI	GCATC	4 cut(s)	70, 293, 346, 511
MaeI	CTAG	3 cut(s)	132, 225, 429
MaeII	ACGT	1 cut(s)	884
MaeIII	GTNAC	3 cut(s)	109, 207, 880
MalI	GATC	8 cut(s)	12, 36, 633, 686, 726, 768, 876, 962
MboI	GATC	8 cut(s)	10, 34, 631, 684, 724, 766, 874, 960
MboII	GAAGA	7 cut(s)	227, 391, 503, 564, 613, 632, 732
MflI	RGATCY	2 cut(s)	684, 960
MhlI	GDGCHC	1 cut(s)	1023
MluCI	AATT	3 cut(s)	771, 800, 1027
MlyI	GAGTC	2 cut(s)	261, 784
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	6 cut(s)	184, 235, 588, 633, 1009, 1065
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	3 cut(s)	842, 1067, 1096
MslI	CAYNNNNRTG	1 cut(s)	330
MspA1I	CMGCKG	1 cut(s)	67
MspR9I	CCNGG	1 cut(s)	689
MvaI	CCWGG	1 cut(s)	689
NcoI	CCATGG	1 cut(s)	751
NdeI	CATATG	1 cut(s)	454
NdeII	GATC	8 cut(s)	10, 34, 631, 684, 724, 766, 874, 960
NlaIII	CATG	5 cut(s)	19, 755, 881, 951, 974
NlaIV	GGNNCC	2 cut(s)	29, 570
NmuCI	GTSAC	1 cut(s)	880
NspI	RCATGY	2 cut(s)	951, 974
OliI	CACNNNNGTG	1 cut(s)	330
PciI	ACATGT	1 cut(s)	970
PciSI	GCTCTTC	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	3 cut(s)	289, 559, 902
PkrI	GCNGC	3 cut(s)	247, 895, 898
PleI	GAGTC	2 cut(s)	260, 784
PpsI	GAGTC	2 cut(s)	260, 784
PscI	ACATGT	1 cut(s)	970
PshAI	GACNNNNGTC	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	687
PspFI	CCCAGC	2 cut(s)	335, 1061
PspGI	CCWGG	1 cut(s)	687
PspN4I	GGNNCC	2 cut(s)	29, 570
PspPI	GGNCC	1 cut(s)	311
PstI	CTGCAG	1 cut(s)	901
PsuI	RGATCY	2 cut(s)	684, 960
PvuII	CAGCTG	1 cut(s)	67
RsaI	GTAC	2 cut(s)	106, 476
RsaNI	GTAC	2 cut(s)	105, 475
RseI	CAYNNNNRTG	1 cut(s)	330
SapI	GCTCTTC	1 cut(s)	210
SaqAI	TTAA	3 cut(s)	842, 1067, 1096
SatI	GCNGC	3 cut(s)	246, 894, 897
Sau3AI	GATC	8 cut(s)	10, 34, 631, 684, 724, 766, 874, 960
Sau96I	GGNCC	1 cut(s)	311
ScaI	AGTACT	2 cut(s)	106, 476
SchI	GAGTC	2 cut(s)	261, 784
ScrFI	CCNGG	1 cut(s)	689
SduI	GDGCHC	1 cut(s)	1023
SetI	ASST	9 cut(s)	33, 69, 195, 222, 786, 887, 1007, 1020, 1067
SfaNI	GCATC	4 cut(s)	70, 293, 346, 511
SfcI	CTRYAG	1 cut(s)	897
SinI	GGWCC	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	330
SmlI	CTYRAG	2 cut(s)	785, 1000
SmoI	CTYRAG	2 cut(s)	785, 1000
SpeI	ACTAGT	1 cut(s)	131
Sse9I	AATT	3 cut(s)	771, 800, 1027
SsiI	CCGC	2 cut(s)	248, 1058
SspMI	CTAG	3 cut(s)	132, 225, 429
StyD4I	CCNGG	1 cut(s)	687
StyI	CCWWGG	1 cut(s)	751
TaaI	ACNGT	5 cut(s)	109, 329, 613, 704, 812
TaiI	ACGT	1 cut(s)	887
TaqI	TCGA	3 cut(s)	287, 479, 983
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	3 cut(s)	771, 800, 1027
TatI	WGTACW	2 cut(s)	104, 474
TfiI	GAWTC	3 cut(s)	289, 559, 902
Tru1I	TTAA	3 cut(s)	842, 1067, 1096
Tru9I	TTAA	3 cut(s)	842, 1067, 1096
TscAI	CASTG	2 cut(s)	334, 366
TseFI	GTSAC	1 cut(s)	880
TseI	GCWGC	3 cut(s)	245, 893, 896
Tsp45I	GTSAC	1 cut(s)	880
TspDTI	ATGAA	6 cut(s)	429, 471, 480, 497, 633, 924
TspRI	CASTG	2 cut(s)	334, 366
VneI	GTGCAC	1 cut(s)	1019
VpaK11BI	GGWCC	1 cut(s)	311
XagI	CCTNNNNNAGG	1 cut(s)	35
XbaI	TCTAGA	1 cut(s)	224
XceI	RCATGY	2 cut(s)	951, 974
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	3 cut(s)	132, 225, 429
ZrmI	AGTACT	2 cut(s)	106, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.