Rmu_co8397651.1_g000001

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8397651.1
OG0005498
Physical Location & Seq
Forward (+)
547 .. 1248
702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8397651.1_g000001.1.cds

Sequence Viewer

Length: 342 bp
ctgcccgttcatcccaaaggttatttcatcctgaaagatcctgactttgatttgaaaggtttgcttgatcaggtggaatgttatacaagaacatggcaaattggaaccttgatcaggatgtttcaagtagagtgtgtaaacgaaggttatgttgagccttgttgtgtggagaacgatgaggttttagctcgtgcgttgcaagaagagctatctagacttgcaaaggaagaggccgcgggagtttctagttatggagatgcgcctttgcaagcgtcgattcttgcacaggattggctcggtccttcaagcagacacaatggttctggtatgggaaaagattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

113

Amino Acids

12.53

Weight (kDa)

4.63

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 236
AciI CCGC 2 cut(s) 234, 236
AclWI GGATC 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 114
AgsI TTSAA 3 cut(s) 55, 125, 306
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AluBI AGCT 2 cut(s) 188, 208
AluI AGCT 2 cut(s) 188, 208
AlwI GGATC 1 cut(s) 32
AoxI GGCC 1 cut(s) 231
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 1 cut(s) 299
AvaII GGWCC 1 cut(s) 299
BauI CACGAG 1 cut(s) 189
BclI TGATCA 2 cut(s) 67, 111
BfaI CTAG 2 cut(s) 213, 246
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme18I GGWCC 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 299
BmiI GGNNCC 1 cut(s) 106
BmsI GCATC 1 cut(s) 247
BsaJI CCNNGG 1 cut(s) 234
Bsc4I CCNNNNNNNGG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 3 cut(s) 10, 27, 123
BseLI CCNNNNNNNGG 1 cut(s) 114
Bsh1236I CGCG 1 cut(s) 236
BshFI GGCC 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 114
BsnI GGCC 1 cut(s) 233
Bsp143I GATC 3 cut(s) 37, 67, 111
BspACI CCGC 2 cut(s) 234, 236
BspANI GGCC 1 cut(s) 233
BspFNI CGCG 1 cut(s) 236
BspLI GGNNCC 1 cut(s) 106
BspPI GGATC 1 cut(s) 32
BspQI GCTCTTC 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 3 cut(s) 37, 67, 111
BssSI CACGAG 1 cut(s) 189
Bst2BI CACGAG 1 cut(s) 189
Bst6I CTCTTC 2 cut(s) 198, 222
BstC8I GCNNGC 1 cut(s) 270
BstDSI CCRYGG 1 cut(s) 234
BstENI CCTNNNNNAGG 1 cut(s) 112
BstF5I GGATG 3 cut(s) 10, 27, 123
BstFNI CGCG 1 cut(s) 236
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 3 cut(s) 40, 70, 114
BstMBI GATC 3 cut(s) 37, 67, 111
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstUI CGCG 1 cut(s) 236
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuRI GGCC 1 cut(s) 233
BtgI CCRYGG 1 cut(s) 234
BtsCI GGATG 3 cut(s) 10, 27, 123
Cac8I GCNNGC 1 cut(s) 270
CfoI GCGC 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 299
Cfr42I CCGCGG 1 cut(s) 237
CseI GACGC 1 cut(s) 261
CviAII CATG 1 cut(s) 93
CviJI RGCY 5 cut(s) 157, 188, 208, 233, 295
CviKI_1 RGCY 5 cut(s) 157, 188, 208, 233, 295
DpnI GATC 3 cut(s) 39, 69, 113
DpnII GATC 3 cut(s) 37, 67, 111
Eam1104I CTCTTC 2 cut(s) 198, 222
EarI CTCTTC 2 cut(s) 198, 222
Eco47I GGWCC 1 cut(s) 299
EcoNI CCTNNNNNAGG 1 cut(s) 112
FaeI CATG 1 cut(s) 96
FaiI YATR 5 cut(s) 84, 94, 150, 252, 329
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FatI CATG 1 cut(s) 92
FauI CCCGC 1 cut(s) 229
FbaI TGATCA 2 cut(s) 67, 111
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 2 cut(s) 14, 130
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 2 cut(s) 213, 246
GlaI GCGC 1 cut(s) 261
GluI GCNGC 1 cut(s) 234
HaeIII GGCC 1 cut(s) 233
HgaI GACGC 1 cut(s) 261
HhaI GCGC 1 cut(s) 262
Hin1II CATG 1 cut(s) 96
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HinfI GANTC 1 cut(s) 277
Hpy166II GTNNAC 1 cut(s) 139
Hpy188III TCNNGA 4 cut(s) 31, 41, 115, 213
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 1 cut(s) 277
HpyAV CCTTC 2 cut(s) 137, 312
HpyCH4V TGCA 4 cut(s) 199, 221, 268, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
Hsp92II CATG 1 cut(s) 96
HspAI GCGC 1 cut(s) 260
Ksp22I TGATCA 2 cut(s) 67, 111
KspI CCGCGG 1 cut(s) 237
Kzo9I GATC 3 cut(s) 37, 67, 111
LguI GCTCTTC 1 cut(s) 198
LpnPI CCDG 6 cut(s) 44, 54, 56, 100, 272, 309
LweI GCATC 1 cut(s) 247
MaeI CTAG 2 cut(s) 213, 246
MalI GATC 3 cut(s) 39, 69, 113
MboI GATC 3 cut(s) 37, 67, 111
MboII GAAGA 2 cut(s) 215, 239
MflI RGATCY 1 cut(s) 37
MluCI AATT 1 cut(s) 99
MnlI CCTC 2 cut(s) 172, 223
MspA1I CMGCKG 1 cut(s) 236
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 205
NdeII GATC 3 cut(s) 37, 67, 111
NlaIII CATG 1 cut(s) 96
NlaIV GGNNCC 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 198
PfeI GAWTC 1 cut(s) 277
PkrI GCNGC 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 106
PspPI GGNCC 1 cut(s) 299
PsuI RGATCY 1 cut(s) 37
SacII CCGCGG 1 cut(s) 237
SapI GCTCTTC 1 cut(s) 198
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 3 cut(s) 37, 67, 111
Sau96I GGNCC 1 cut(s) 299
SetI ASST 8 cut(s) 22, 61, 75, 110, 148, 183, 190, 210
SfaNI GCATC 1 cut(s) 247
Sfr303I CCGCGG 1 cut(s) 237
SgrBI CCGCGG 1 cut(s) 237
SinI GGWCC 1 cut(s) 299
Sse9I AATT 1 cut(s) 99
SsiI CCGC 2 cut(s) 234, 236
SspMI CTAG 2 cut(s) 213, 246
TaqI TCGA 1 cut(s) 275
TaqII GACCGA 1 cut(s) 287
TasI AATT 1 cut(s) 99
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 299
XagI CCTNNNNNAGG 1 cut(s) 112
XbaI TCTAGA 1 cut(s) 212
XspI CTAG 2 cut(s) 213, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.